Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001239.1 Hibiscus syriacus cultivar Beakdansim tig00002438_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52149

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--56
19
2.9
19
81
2
67
50
23
16
10
1.76
1--67
19
3.5
18
81
2
62
49
25
14
10
1.76
63--188
19
7.1
19
69
18
83
12
24
20
42
1.87
85--140
14
3.6
14
74
21
58
10
25
25
39
1.87
68--163
33
2.9
33
95
0
165
11
25
22
40
1.87
1855--2035
92
2.0
88
91
6
292
22
11
19
46
1.81
3959--3990
12
2.8
12
95
4
57
40
6
37
15
1.73
4189--4233
20
2.2
20
88
0
63
42
15
20
22
1.89
4262--4308
18
2.5
19
75
3
60
40
21
14
23
1.90
4520--4605
20
4.4
20
74
11
88
40
23
19
16
1.91
4637--4690
14
3.5
14
77
22
63
11
20
20
48
1.80
4619--4689
33
2.2
33
81
0
79
21
19
19
39
1.93
6231--6322
42
2.2
42
90
1
141
20
14
42
22
1.88
6258--6322
21
3.1
21
73
8
78
21
12
43
23
1.86
6682--6742
19
3.2
19
83
4
79
39
22
22
14
1.91
6732--6821
14
5.8
14
72
21
72
47
22
17
12
1.80
6716--6835
32
3.8
32
93
3
197
46
22
18
12
1.82
6853--6907
13
3.9
13
77
22
58
12
16
21
49
1.79
6836--6923
31
2.8
31
88
6
142
13
18
20
47
1.82
6831--6923
19
5.7
18
70
28
73
13
19
20
46
1.84
6908--6962
20
2.8
19
83
8
65
16
23
23
36
1.94
8770--8833
20
3.2
20
84
0
74
45
21
17
15
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9074--9117
22
2.0
22
95
0
79
18
15
45
20
1.85
10217--10247
14
2.2
14
94
0
53
16
12
12
58
1.64
10222--10267
24
1.9
24
95
0
83
17
10
13
58
1.62
10429--10466
20
1.9
20
88
0
58
21
10
7
60
1.54
18384--18543
80
2.0
80
98
0
311
38
20
18
21
1.93
21097--21121
2
12.5
2
100
0
50
0
48
0
52
1.00
25204--25283
35
2.3
35
85
8
117
41
28
7
22
1.81
25299--25414
60
1.9
60
91
0
187
30
20
5
43
1.73
25303--25414
20
5.6
20
82
0
116
31
20
3
44
1.68
26059--26095
2
18.5
2
94
0
65
45
0
0
54
1.00
31409--31440
10
3.2
10
95
0
55
34
25
0
40
1.56
33205--33242
18
2.1
18
90
0
58
26
31
18
23
1.97
33244--33310
30
2.2
30
94
0
116
11
41
19
26
1.86
33852--33936
35
2.5
33
78
14
91
25
8
10
55
1.62
39804--39857
2
27.0
2
100
0
108
50
0
0
50
1.00
41048--41110
24
2.7
23
83
13
69
36
0
0
63
0.95
41048--41101
26
2.1
26
86
6
74
37
0
0
62
0.95
43785--43838
21
2.5
22
88
5
76
62
7
0
29
1.22
50979--51013
6
5.8
6
96
0
61
45
0
17
37
1.48

Tables:   1

The End!