Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000124.1 Hibiscus syriacus cultivar Beakdansim tig00000223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81885

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2474--2552
22
3.7
21
77
5
95
26
26
22
24
2.00
4060--4102
21
2.0
21
86
0
59
9
39
16
34
1.80
17282--17401
42
2.9
42
84
2
161
34
2
35
27
1.71
17282--17416
42
3.2
41
81
6
155
33
2
37
27
1.69
18623--18667
21
2.1
21
83
0
54
13
8
31
46
1.74
19044--19082
6
6.5
6
96
0
69
17
12
35
33
1.88
30603--30647
23
1.9
24
86
4
65
60
0
17
22
1.37
34487--34516
6
5.0
6
100
0
60
16
66
0
16
1.25
35099--35168
35
2.0
35
83
5
88
50
4
0
45
1.21
35132--35186
22
2.5
22
87
3
74
47
0
1
50
1.11
36712--36745
6
6.0
6
96
3
54
29
52
17
0
1.45
36713--36762
5
9.6
5
93
6
66
26
56
18
0
1.42
36713--36762
14
3.2
15
86
13
66
26
56
18
0
1.42
36920--36989
20
3.5
19
73
11
68
37
24
21
17
1.94
36940--37034
21
4.6
21
68
7
77
34
26
17
21
1.95
36908--37009
41
2.5
40
79
6
132
36
24
18
20
1.95
44426--44483
10
5.6
10
80
8
53
68
3
5
22
1.24
44816--44861
11
4.4
10
84
10
56
71
2
8
17
1.21
44816--44861
21
2.2
21
84
7
58
71
2
8
17
1.21
50905--51009
37
2.8
37
85
0
138
39
15
14
31
1.87
51431--51588
64
2.5
63
77
8
169
32
5
3
58
1.38
51839--51889
4
12.2
4
76
15
50
19
5
0
74
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51847--51906
12
4.8
12
80
11
50
16
6
0
76
0.99
52707--52753
23
2.0
23
84
15
62
27
2
0
70
0.99
52764--52851
30
2.9
31
82
14
87
30
5
1
62
1.26
52924--53057
51
2.6
49
74
14
119
28
4
1
65
1.21
55805--56108
149
2.0
149
97
1
574
27
16
20
35
1.94
56087--56131
23
2.0
23
86
0
63
20
24
28
26
1.99
62081--62384
149
2.0
149
98
0
581
27
16
20
35
1.94
62363--62407
23
2.0
23
86
0
63
20
24
28
26
1.99
65619--65658
16
2.6
15
82
17
55
80
5
15
0
0.88
66429--66505
22
3.5
22
92
0
127
38
25
14
20
1.91
67274--68329
106
10.0
106
89
2
1522
34
24
18
22
1.96
67287--68329
529
2.0
523
90
2
1660
34
24
18
22
1.96
69535--69581
23
2.0
23
84
15
62
27
2
0
70
0.99
69807--69869
22
2.5
25
73
19
60
33
4
0
61
1.17
69763--69896
21
6.4
21
67
21
70
29
3
0
65
1.15
69776--69891
45
2.5
45
75
20
112
31
4
0
63
1.19
74482--74521
21
1.9
21
89
0
62
20
30
5
45
1.72
78985--79408
221
1.9
214
87
10
619
46
7
7
38
1.61
79643--79680
20
1.9
20
100
0
76
52
13
15
18
1.74

Tables:   1

The End!