genome.fa.s1240.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001240.1 Hibiscus syriacus cultivar Beakdansim tig00002439_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166992

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2008--2040	17	1.9	17	93	0	57	33	30	0	36	1.58
6114--6174	26	2.3	26	78	10	70	11	14	13	60	1.59
23555--23650	45	2.1	45	94	0	165	32	21	0	45	1.52
34756--34785	15	2.1	15	93	6	53	76	3	20	0	0.92
40848--40905	13	4.7	13	70	12	50	27	41	1	29	1.66
40847--40997	35	4.3	35	90	0	221	25	39	3	31	1.74
47155--47232	35	2.2	35	95	0	138	26	37	5	30	1.78
47203--47255	22	2.4	22	93	0	88	28	33	5	32	1.81
47634--47670	18	2.1	17	90	5	56	72	0	27	0	0.84
53116--53234	11	10.2	11	67	20	64	28	36	2	31	1.71
53117--53248	70	1.9	71	88	1	203	29	35	3	31	1.73
53117--53248	35	3.7	35	88	1	183	29	35	3	31	1.73
53555--53612	23	2.5	23	91	5	91	37	27	24	10	1.88
64043--64072	13	2.4	13	94	5	53	26	30	0	43	1.55
68724--68757	17	2.1	17	88	5	52	5	5	11	76	1.14
72074--72120	23	2.0	23	84	8	60	19	14	12	53	1.73
75756--75785	13	2.3	13	94	0	51	36	3	6	53	1.44
92888--92928	15	2.7	15	88	0	64	46	0	34	19	1.50
93063--93117	24	2.3	25	81	15	71	34	12	21	30	1.91
95420--95460	22	1.9	21	90	5	64	43	34	2	19	1.64
97090--97195	17	6.1	17	71	14	83	37	11	9	41	1.73
97829--97879	21	2.4	21	96	0	93	39	21	3	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101760--101831	17	4.2	17	78	3	72	40	6	12	40	1.70
101820--101901	17	4.8	17	66	11	51	43	14	12	29	1.82
102697--102834	72	1.9	71	81	7	163	21	18	21	38	1.93
107390--108064	336	2.0	336	100	0	1350	34	21	19	25	1.96
109716--109745	13	2.4	13	94	5	53	43	0	30	26	1.55
120811--120864	23	2.3	23	100	0	108	22	12	20	44	1.85
125639--125673	18	1.9	18	88	0	52	60	28	0	11	1.32
134864--134898	12	3.0	12	87	4	54	11	14	8	65	1.46
135096--135130	12	3.0	12	87	4	54	65	8	14	11	1.46
141916--141984	13	5.5	13	74	10	63	27	43	2	26	1.69
142381--142433	6	8.5	6	77	6	52	79	3	15	1	0.96
142704--142736	17	1.9	17	93	0	57	33	30	0	36	1.58
146828--146889	27	2.2	28	78	13	74	11	17	12	58	1.63
162610--162649	17	2.4	17	91	0	62	25	40	0	35	1.56
162618--162654	17	2.2	17	100	0	74	24	35	0	40	1.55
164264--164359	45	2.1	45	96	0	174	31	21	0	46	1.52

Tables:   1

The End!