genome.fa.s1241.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001241.1 Hibiscus syriacus cultivar Beakdansim tig00002442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165807

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3740--3782	21	2.0	21	86	9	59	46	9	4	39	1.57
9767--9828	31	2.0	31	93	0	106	24	25	12	37	1.91
10201--10230	15	1.9	16	93	6	53	53	0	0	46	1.00
11813--11873	31	2.0	31	93	0	104	37	11	22	27	1.89
11819--11886	31	2.2	31	86	5	93	39	8	19	32	1.82
15418--15464	24	2.0	23	88	12	69	80	0	8	10	0.89
16579--16615	2	19.0	2	94	5	67	48	0	0	51	1.00
17161--18397	84	14.7	84	80	2	1230	24	18	24	33	1.97
17165--18362	421	2.8	418	87	2	1668	24	18	24	32	1.97
19033--19292	95	2.7	95	91	4	389	30	18	18	31	1.95
21850--21896	23	2.0	23	88	8	69	76	0	14	8	1.01
21865--21930	29	2.3	29	82	7	82	77	1	12	9	1.06
32613--32654	14	3.1	14	79	3	50	61	2	4	30	1.29
33512--33596	27	2.9	29	81	11	93	37	2	2	57	1.24
33519--33682	29	5.4	30	76	11	129	35	3	1	59	1.24
52921--52947	2	13.5	2	100	0	54	51	0	0	48	1.00
53112--53147	2	18.5	2	88	5	56	50	0	2	47	1.15
52841--53379	266	2.0	267	95	2	981	43	9	7	40	1.64
53846--53913	33	2.1	33	88	0	100	29	22	14	33	1.94
73075--73117	13	3.5	13	75	12	54	48	0	4	46	1.22
73070--73117	24	2.0	24	100	0	96	45	0	8	45	1.33
73544--73614	36	2.0	36	91	0	115	49	5	11	33	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73598--73639	15	2.9	15	86	10	52	47	2	11	38	1.53
73763--73861	49	2.0	50	80	9	114	47	2	0	50	1.12
73840--73908	32	2.3	30	82	12	79	44	0	4	50	1.21
73943--74005	23	2.7	23	80	5	63	46	1	1	50	1.20
73989--74088	28	3.5	28	79	15	109	49	2	0	49	1.12
73981--74033	20	2.7	20	75	16	56	49	1	0	49	1.12
73990--74126	28	5.2	26	69	23	92	47	1	0	50	1.15
74338--74452	42	2.7	42	89	0	167	49	17	13	20	1.79
77012--77052	18	2.3	18	87	4	57	29	7	2	60	1.36
78665--78704	18	2.2	18	95	0	71	22	32	22	22	1.98
80243--80285	20	2.2	20	86	0	59	30	13	20	34	1.92
89490--89532	20	2.2	20	86	0	59	30	13	20	34	1.92
98852--98886	11	3.2	11	91	0	61	28	20	0	51	1.47
99688--99727	21	1.9	21	84	0	53	37	5	17	40	1.72
101387--101472	44	2.0	44	95	0	154	25	6	34	32	1.83
101964--102012	16	3.1	16	93	0	89	40	6	16	36	1.73
104827--104852	2	13.0	2	100	0	52	50	0	0	50	1.00
106623--107113	136	3.6	135	90	1	752	24	22	18	34	1.96
120075--120142	2	34.0	2	100	0	136	50	0	0	50	1.00
122631--122877	126	2.0	127	82	6	306	25	17	6	49	1.71
124250--124310	23	2.7	23	100	0	122	21	21	19	37	1.94
124250--124308	11	5.2	11	84	8	82	20	22	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124647--124739	29	2.9	31	73	18	84	44	0	8	47	1.34
124699--124753	18	3.4	18	65	31	52	38	0	9	52	1.33
125017--125094	30	2.6	29	84	15	97	43	2	8	44	1.49
125038--125118	22	3.3	22	70	23	63	44	1	11	43	1.47
125392--125458	28	2.4	28	82	9	91	52	11	1	34	1.48
125428--125476	21	2.3	21	82	3	62	51	16	2	30	1.56
125838--125903	21	3.0	21	67	16	62	28	25	27	18	1.98
135949--135982	15	2.3	15	94	0	59	5	17	67	8	1.37
143792--143837	20	2.3	19	89	10	74	54	10	17	17	1.70
143959--144004	20	2.3	20	86	13	69	56	8	17	17	1.65
146240--146304	21	3.1	21	80	6	69	40	15	29	15	1.88
146338--146403	33	2.0	33	90	0	105	28	0	48	22	1.51
148195--148243	19	2.6	19	93	0	80	30	2	10	57	1.43
148371--149532	199	5.8	199	98	0	2247	37	16	15	30	1.90
148371--149532	397	2.9	398	98	0	2247	37	16	15	30	1.90
148371--149532	596	1.9	597	98	0	2256	37	16	15	30	1.90
151005--151078	3	25.0	3	76	2	69	33	5	35	25	1.79
152268--152956	182	3.8	183	94	2	1178	36	13	16	33	1.88
152952--152994	22	1.9	23	85	4	61	30	11	11	46	1.76
154042--154105	23	2.8	23	87	0	92	35	6	20	37	1.78
154042--154114	23	3.2	23	82	7	85	34	5	20	39	1.76
154789--154825	18	2.1	18	89	0	56	72	2	0	24	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156373--156406	12	2.8	12	95	0	59	8	11	50	29	1.69
156606--156630	6	4.2	6	100	0	50	0	64	16	20	1.30

Tables:   1

The End!