Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001243.1 Hibiscus syriacus cultivar Beakdansim tig00002444_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50844

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1889--1986
31
3.2
31
86
4
137
43
4
8
43
1.53
11115--11144
3
9.7
3
92
7
51
36
0
0
63
0.95
12307--12355
18
2.6
19
90
6
73
40
0
0
59
0.98
12308--12354
15
3.4
14
78
21
55
40
0
0
59
0.97
15478--15539
32
1.9
32
90
6
99
19
14
9
56
1.65
15759--16196
210
2.1
210
84
2
558
32
18
22
26
1.97
22021--22059
5
7.8
5
86
11
53
84
0
15
0
0.62
22016--22060
12
3.7
12
88
5
72
84
0
15
0
0.62
22013--22061
15
3.2
14
83
13
53
81
0
18
0
0.69
23777--23873
44
2.2
44
81
5
108
29
26
15
27
1.96
24040--24084
3
15.0
3
100
0
90
33
0
0
66
0.92
28962--29001
20
2.0
21
95
5
73
25
20
22
32
1.98
31113--31141
14
2.1
14
100
0
58
0
13
6
79
0.93
31614--31674
3
20.0
3
80
9
70
63
0
1
34
1.04
32019--32695
113
6.0
113
84
2
795
28
18
13
38
1.89
32020--32682
337
2.0
340
89
1
1026
28
19
12
38
1.89
33422--33895
87
5.6
83
93
4
808
39
22
12
26
1.89
33422--33895
170
2.8
169
96
1
859
39
22
12
26
1.89
35234--35266
9
3.5
10
88
12
52
0
18
0
81
0.68
35235--35274
11
3.8
10
87
9
53
0
17
0
82
0.67
35235--35277
21
2.0
21
90
4
68
0
18
0
81
0.69
41274--41305
15
2.1
15
94
0
55
46
9
18
25
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46198--46226
14
2.1
14
100
0
58
0
13
6
79
0.93
46695--46755
3
20.0
3
80
9
70
63
0
1
34
1.04
46952--47168
118
1.8
120
84
6
296
26
19
14
39
1.90
47112--47762
110
5.8
112
80
7
680
28
19
12
39
1.88
47095--47749
333
2.0
336
87
4
950
29
19
12
38
1.89
48472--48939
82
5.6
83
90
7
736
39
22
11
26
1.88
50248--50302
11
4.6
12
77
8
51
0
18
0
81
0.68
50247--50305
19
3.1
19
90
2
91
0
18
0
81
0.69

Tables:   1

The End!