Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001245.1 Hibiscus syriacus cultivar Beakdansim tig00002447_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129817

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1456--1626
2
86.5
2
83
4
204
7
0
41
50
1.33
4357--4402
16
2.9
16
80
0
56
39
15
21
23
1.92
17296--17338
14
3.1
14
81
18
54
74
0
4
20
1.00
21318--21372
11
5.0
11
88
0
74
69
7
7
16
1.35
21314--21372
22
2.7
22
81
0
82
71
6
6
15
1.29
24522--24589
21
3.2
21
89
0
109
20
22
22
35
1.96
26000--26050
21
2.5
19
84
12
66
70
0
1
27
0.98
32181--32233
26
2.0
26
85
0
70
24
13
20
41
1.88
34511--34553
18
2.4
18
88
7
61
25
9
0
65
1.22
37438--37465
6
4.7
6
100
0
56
17
0
0
82
0.68
40715--40895
94
1.9
96
82
4
233
37
13
19
28
1.91
40861--40915
22
2.7
20
82
5
65
36
16
20
27
1.93
40861--40920
20
2.9
20
85
5
75
36
15
20
28
1.92
41259--41538
54
5.2
54
85
0
337
31
19
18
30
1.95
41263--41543
107
2.6
108
83
0
339
31
19
18
29
1.96
42957--43008
20
2.6
20
100
0
104
28
26
19
25
1.98
44323--44374
17
2.9
18
88
5
79
17
19
30
32
1.95
48660--48701
17
2.4
19
80
11
54
42
7
14
35
1.73
49488--49547
30
2.0
30
83
0
75
33
6
21
38
1.80
54731--54776
22
2.0
22
83
12
56
52
13
2
32
1.52
58565--58611
1
47.0
1
82
0
58
0
0
8
91
0.42
58557--58611
10
5.5
10
93
0
74
0
0
10
89
0.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58551--58612
8
7.8
8
84
13
58
0
0
14
85
0.60
58557--58611
21
2.7
21
94
2
94
0
0
10
89
0.50
59460--59505
22
2.0
22
83
12
56
52
13
2
32
1.52
60831--60865
17
2.1
18
89
10
56
28
0
17
54
1.43
64949--65020
28
2.5
28
84
4
90
22
9
29
38
1.86
65311--65350
21
1.9
21
84
0
53
50
2
20
27
1.61
70131--70208
33
2.4
32
83
10
95
38
0
1
60
1.05
70160--70197
19
2.0
19
85
10
51
47
0
0
52
1.00
74198--74235
13
3.0
13
88
3
60
44
0
0
55
0.99
74249--74305
23
2.6
23
94
5
100
43
12
3
40
1.59
81242--81290
20
2.5
20
86
0
71
38
8
22
30
1.83
85170--85233
27
2.4
27
84
5
76
45
0
4
50
1.22
85598--85657
15
4.1
14
78
19
61
68
0
5
26
1.10
86950--87029
3
26.0
3
87
5
115
62
0
0
37
0.95
87170--87861
76
9.1
76
98
0
1339
34
23
19
22
1.96
87818--87893
31
2.4
32
91
2
127
36
19
17
26
1.94
88759--88813
22
2.5
22
93
0
101
40
14
10
34
1.81
89180--89390
54
3.9
54
94
0
350
23
24
15
36
1.94
93507--93566
15
3.9
15
77
18
70
1
16
0
81
0.77
93504--93559
20
3.0
20
84
7
64
1
17
0
80
0.80
96424--96463
21
1.9
21
94
0
53
55
10
12
22
1.67
99054--99117
27
2.4
26
81
5
65
45
1
4
48
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99395--99427
15
2.3
15
89
5
50
57
0
0
42
0.98
100021--100049
11
2.5
12
94
5
51
3
34
0
62
1.12
104166--104282
53
2.2
53
90
3
182
36
19
17
25
1.94
105594--105626
16
2.1
15
94
5
57
0
27
0
72
0.85
113459--113521
28
2.2
28
80
8
74
47
0
20
31
1.51
116920--116975
22
2.5
23
83
16
73
23
19
5
51
1.67
121603--121656
19
2.6
19
82
11
54
16
5
1
75
1.07

Tables:   1

The End!