genome.fa.s1249.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001249.1 Hibiscus syriacus cultivar Beakdansim tig00002451_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  172098

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583--617	13	2.5	14	90	9	54	14	25	0	60	1.35
3231--3286	22	2.5	22	86	13	80	21	21	7	50	1.72
6588--6655	36	2.0	34	82	8	84	50	1	2	45	1.26
19693--19733	2	21.0	2	95	5	75	51	0	0	48	1.00
19714--19824	39	2.9	39	89	5	158	45	1	4	48	1.33
20997--21050	12	4.3	12	75	15	56	20	3	1	74	1.07
21889--21943	24	2.3	24	93	3	94	43	10	14	30	1.80
25558--25612	21	2.6	21	97	0	101	21	23	25	29	1.99
30655--30698	21	2.1	21	82	0	52	9	38	15	36	1.80
31049--31105	28	2.0	28	83	6	71	19	5	22	52	1.66
31106--31157	2	26.0	2	100	0	104	50	0	0	50	1.00
37686--37729	20	2.2	20	84	8	54	0	6	9	84	0.79
37692--37729	19	1.9	19	89	5	58	0	7	5	86	0.69
41178--41249	35	2.1	35	89	0	108	48	15	9	26	1.75
45588--45704	45	2.6	45	94	0	207	23	26	7	42	1.80
45969--46625	55	12.0	55	88	1	820	27	20	18	33	1.96
47041--47093	20	2.7	20	88	5	72	15	26	18	39	1.90
48607--48664	30	1.9	30	85	0	80	50	12	15	22	1.77
50419--50469	19	2.6	19	87	6	57	49	0	3	47	1.20
50546--50617	14	5.2	14	69	21	62	48	1	2	47	1.25
50543--50617	28	2.8	26	82	9	96	49	1	2	46	1.24
65253--65291	17	2.3	17	100	0	78	23	35	10	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66526--66640	60	1.9	60	96	0	212	33	26	8	32	1.87
74232--74270	21	1.9	20	84	5	51	35	17	17	28	1.94
79613--79648	11	3.3	11	96	0	63	19	11	11	58	1.62
90204--90238	18	1.9	18	94	0	61	77	0	8	14	0.99
91640--91798	86	1.8	85	85	9	223	42	9	5	42	1.59
91720--91918	37	5.7	37	77	13	206	43	12	3	41	1.57
91771--91829	12	4.8	12	69	19	50	47	13	0	38	1.43
91785--91918	63	2.1	63	88	1	198	44	12	2	41	1.55
91869--91931	12	5.2	12	74	11	56	49	9	0	41	1.35
91843--91929	37	2.3	37	88	2	129	45	11	1	41	1.47
93432--93473	22	1.9	22	95	0	75	16	11	14	57	1.66
105464--105528	12	5.6	12	72	17	57	55	4	3	36	1.36
105574--105676	2	51.5	2	100	0	206	49	0	0	50	1.00
105662--106025	38	9.4	37	77	14	308	43	10	3	41	1.58
105666--105742	35	2.3	33	86	10	111	41	9	6	42	1.62
105705--106007	75	3.8	85	79	13	247	44	11	2	40	1.56
105813--106025	75	2.8	75	89	2	329	44	11	1	41	1.52
105946--106008	13	5.0	13	73	11	51	49	11	0	39	1.38
117501--118114	216	2.9	216	92	4	1039	49	8	13	28	1.70
118296--118331	6	6.0	6	100	0	72	16	0	16	66	1.25
122316--122421	22	5.0	22	75	16	82	45	9	5	39	1.60
122333--122422	22	4.2	22	76	11	87	45	8	5	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122417--122466	24	2.1	24	85	7	66	38	6	10	46	1.62
122474--122633	2	77.5	2	65	17	60	41	5	2	50	1.37
122470--122633	18	9.8	16	66	24	74	41	4	2	51	1.36
122473--122631	7	23.1	7	71	16	61	41	5	2	50	1.37
122621--122768	55	2.7	55	94	3	255	41	8	8	42	1.64
122696--122809	42	2.8	42	87	6	157	40	8	7	42	1.65
122656--122851	97	2.0	96	85	5	261	40	7	8	43	1.63
122675--122905	97	2.4	96	79	8	222	42	7	7	41	1.61
122882--122986	7	15.4	7	72	16	53	44	7	1	45	1.43
122882--123109	2	108.5	2	65	21	67	46	7	2	42	1.45
123015--123089	27	2.7	29	81	4	91	48	6	2	42	1.43
122894--123134	129	1.9	127	84	6	324	46	8	2	42	1.49
123043--123103	29	2.1	29	84	6	79	50	6	0	42	1.28
123071--123195	53	2.4	53	87	2	182	46	7	4	42	1.50
123071--123439	51	7.3	51	70	17	178	43	7	7	42	1.59
123136--123396	33	7.8	33	70	14	151	42	6	7	43	1.59
123169--123439	58	5.0	51	86	8	312	42	7	8	42	1.61
123171--123394	109	2.0	112	88	7	339	42	6	8	42	1.60
123499--123636	62	2.2	61	84	5	188	47	7	8	36	1.64
123859--124171	112	2.8	112	82	4	391	31	28	7	32	1.84
124321--124373	6	9.0	6	76	12	56	49	43	3	3	1.38
124321--124373	17	3.0	18	86	10	74	49	43	3	3	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124614--124839	63	3.6	63	88	2	312	31	11	16	40	1.84
127125--127162	20	1.9	19	89	5	58	15	7	15	60	1.57
128881--128979	39	2.6	38	87	4	144	58	13	8	20	1.60
131235--131307	26	2.8	26	89	0	110	17	15	16	50	1.78
138192--138253	29	2.1	29	82	5	72	29	11	9	50	1.70
138604--138637	2	17.0	2	100	0	68	50	0	0	50	1.00
139551--139644	46	2.0	47	95	2	172	37	1	29	31	1.65
139911--140304	4	99.0	4	98	1	765	50	24	0	25	1.50
140301--140334	15	2.2	16	89	5	52	41	5	0	52	1.25
147373--147821	55	8.2	55	85	2	564	30	18	21	29	1.97
166074--166219	55	2.7	55	94	0	256	30	17	21	31	1.96
166526--166643	42	2.8	42	90	1	184	51	19	4	24	1.64
166555--166622	21	3.2	21	66	15	59	55	20	1	22	1.51
169059--169175	55	2.2	52	83	7	146	62	16	6	14	1.52
169964--170205	55	4.4	55	87	0	340	32	17	20	29	1.96

Tables:   1

The End!