Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000125.1 Hibiscus syriacus cultivar Beakdansim tig00000224_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98074

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3551--3614
34
1.9
33
93
3
110
26
9
17
46
1.78
4736--4776
21
2.0
20
90
4
64
4
19
7
68
1.32
11560--11922
143
2.5
145
77
2
345
37
17
15
29
1.91
13610--13672
24
2.5
25
84
7
83
33
1
4
60
1.27
14932--14991
31
1.9
31
86
6
86
68
3
10
18
1.32
20469--20502
16
2.1
16
88
0
50
52
17
5
23
1.66
21681--21779
48
2.1
48
100
0
198
39
16
20
24
1.92
24793--24903
47
2.5
46
86
5
156
40
9
18
31
1.82
29426--29663
55
4.3
55
78
12
249
30
22
15
31
1.95
29471--29661
55
3.5
55
86
7
273
30
21
15
32
1.94
29416--29714
110
2.7
108
81
7
363
27
23
16
32
1.96
30112--30225
37
3.1
37
85
2
158
27
16
21
35
1.95
31488--31736
125
2.0
125
87
3
358
25
26
15
32
1.96
35139--35287
72
2.1
72
92
0
244
25
24
10
38
1.88
35972--36079
55
2.0
55
94
0
189
21
21
12
45
1.84
36393--36516
46
2.7
47
88
1
178
33
24
13
28
1.93
36380--36527
46
3.2
46
73
16
135
37
22
11
28
1.89
43898--43946
18
2.7
18
81
12
55
24
14
4
57
1.55
52466--52548
24
3.5
25
75
25
67
48
3
2
45
1.33
58830--58862
16
2.0
17
94
5
59
36
6
21
36
1.78
63154--63350
98
2.0
98
97
0
376
29
14
21
34
1.93
63915--63967
26
2.0
26
100
0
106
33
22
7
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66266--66312
2
23.5
2
100
0
94
51
0
0
48
1.00
74278--74317
11
3.5
11
87
12
55
80
0
2
17
0.83
74278--74318
17
2.4
17
91
0
64
78
0
2
19
0.87
89361--89414
24
2.3
24
87
9
76
46
9
29
14
1.76
93922--93961
17
2.3
18
95
4
73
72
12
0
15
1.12
93933--93987
26
2.1
26
89
0
83
70
7
0
21
1.11
96048--96084
17
2.3
17
86
9
51
67
5
0
27
1.12
96504--96614
58
1.9
58
81
7
136
23
27
25
23
2.00

Tables:   1

The End!