Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001250.1 Hibiscus syriacus cultivar Beakdansim tig00002452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46965

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
943--982
21
1.9
21
85
10
55
35
10
2
52
1.48
2823--2859
19
1.9
19
94
0
65
24
21
32
21
1.98
4886--4938
21
2.6
21
82
11
74
37
26
3
32
1.74
8339--8391
21
2.6
21
82
11
65
37
28
1
32
1.68
10022--10051
11
2.7
11
89
0
51
60
0
13
26
1.34
13335--13410
37
2.2
34
86
11
102
11
10
40
36
1.76
13348--13420
37
2.0
37
91
5
121
13
12
39
34
1.82
13810--13834
8
3.1
8
100
0
50
28
0
0
72
0.86
13942--13988
18
2.7
18
86
3
60
31
27
4
36
1.76
16704--16745
12
3.6
12
81
18
52
38
2
0
59
1.10
20510--20564
21
2.6
21
82
0
65
23
18
30
27
1.97
22086--22193
57
1.9
56
83
5
137
26
19
24
29
1.98
28619--28723
21
5.0
21
78
0
102
26
20
23
28
1.99
29654--29678
12
2.1
12
100
0
50
44
0
16
40
1.47
30687--30847
77
2.1
77
86
0
223
45
17
8
27
1.77
33551--33603
18
2.8
19
85
5
72
33
15
22
28
1.94
33792--33856
34
1.9
34
93
0
112
47
7
13
30
1.71
34810--34927
15
7.9
15
73
7
87
23
40
3
32
1.71
34807--34927
30
4.0
30
72
8
102
23
41
3
31
1.71
35893--35927
18
1.9
18
88
0
52
54
14
2
28
1.54
37972--38059
22
4.0
22
87
0
122
28
20
22
28
1.99
39054--39258
29
7.2
29
77
8
172
37
1
16
44
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39213--39268
29
1.9
29
85
0
76
37
0
21
41
1.53
46373--46573
29
7.2
28
81
7
187
35
1
14
48
1.53

Tables:   1

The End!