Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001251.1 Hibiscus syriacus cultivar Beakdansim tig00002455_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66936

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
803--863
23
2.7
23
81
0
86
18
24
26
31
1.97
9158--9182
12
2.1
12
100
0
50
40
8
8
44
1.63
11316--11408
44
2.1
44
86
4
125
32
26
15
25
1.95
15848--15901
12
4.6
11
80
11
63
62
0
22
14
1.31
18620--18680
18
3.7
16
72
12
52
68
1
3
26
1.14
18601--18679
28
3.0
27
71
14
67
70
2
2
24
1.11
22221--22245
13
1.9
13
100
0
50
80
0
4
16
0.87
22714--23149
55
8.1
54
81
8
301
26
26
16
30
1.96
22815--23149
54
6.2
52
85
6
386
26
25
17
30
1.97
22815--23161
158
2.2
163
84
5
447
27
25
16
30
1.97
23530--23795
36
7.4
36
87
2
329
20
19
23
36
1.95
33378--33704
55
6.0
55
89
3
425
28
27
14
29
1.95
33443--34022
55
10.7
55
81
9
326
27
25
15
31
1.96
33676--34022
54
6.5
54
83
6
377
27
25
16
30
1.97
33474--33970
165
3.1
161
81
10
486
27
25
15
30
1.96
33676--34022
158
2.2
163
83
5
438
27
25
16
30
1.97
34390--34655
36
7.4
36
87
2
329
20
19
23
36
1.95
43744--43804
12
5.5
11
77
12
54
68
0
14
16
1.21
48366--48457
42
2.2
41
83
11
107
25
14
25
35
1.93
48368--48457
21
4.3
22
73
18
86
24
14
24
36
1.93
50842--50898
30
1.9
30
88
0
87
47
10
5
36
1.61
50847--50912
30
2.2
31
78
8
73
42
13
7
36
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51281--51337
28
2.0
28
96
0
105
54
14
3
28
1.56
51288--51353
28
2.4
28
85
10
82
51
15
4
28
1.63
52040--52179
47
2.9
48
81
5
158
30
25
16
27
1.97
52596--52702
3
35.0
3
74
15
87
35
2
1
59
1.23
52596--52700
14
8.3
13
74
19
98
35
2
1
60
1.23
52628--52712
23
3.7
23
78
7
86
38
2
1
57
1.19
52596--52712
26
4.8
25
72
21
88
37
2
1
58
1.22
59095--59204
56
2.0
56
96
0
202
38
9
23
29
1.85
59287--59344
22
2.6
22
86
2
80
37
12
13
36
1.82
59938--60000
20
3.0
20
68
17
56
17
19
22
41
1.90
60502--60573
3
24.0
3
80
10
85
34
2
1
61
1.19
61863--61906
19
2.4
19
85
11
56
45
0
2
52
1.13

Tables:   1

The End!