Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001253.1 Hibiscus syriacus cultivar Beakdansim tig00002459_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107878

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--283
44
6.4
45
80
5
306
41
12
21
24
1.88
4--283
88
3.1
90
85
3
352
41
12
21
24
1.88
1401--1456
21
2.9
19
82
12
69
41
7
14
37
1.73
1826--1880
15
3.3
17
67
12
51
36
18
21
23
1.95
3443--3496
15
3.7
15
80
5
56
27
16
1
53
1.53
3442--3482
14
2.9
14
85
3
55
31
14
0
53
1.41
3830--4140
138
2.2
138
91
0
496
30
12
13
43
1.81
5750--5833
24
3.8
22
70
22
68
50
1
1
47
1.16
6062--6116
18
3.3
18
72
27
59
49
3
0
47
1.19
6062--6129
31
2.2
30
87
12
95
45
4
0
50
1.22
6230--6299
2
38.0
2
78
16
80
45
0
0
54
0.99
6231--6299
21
3.2
21
84
10
95
44
0
0
55
0.99
6226--6306
17
4.8
18
86
8
100
44
0
0
55
0.99
6230--6300
25
3.0
23
75
18
74
45
0
0
54
0.99
7782--7825
23
1.9
23
81
9
54
20
13
29
36
1.91
8132--8201
34
2.1
33
84
7
88
40
4
20
35
1.72
26002--26062
31
2.0
31
90
6
97
26
21
14
37
1.92
27387--27436
23
2.2
23
100
0
100
40
32
12
16
1.84
38583--38692
20
5.5
20
91
0
184
17
20
29
32
1.96
38561--38692
60
2.2
60
86
5
178
19
21
28
31
1.97
38583--38712
60
2.2
60
88
0
197
17
21
26
33
1.96
40521--40551
2
15.5
2
93
0
53
54
0
45
0
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40517--40551
12
2.9
12
95
0
61
57
0
42
0
0.99
44154--44223
23
2.8
25
68
16
65
62
2
15
18
1.44
45245--45291
21
2.3
20
85
3
67
44
2
0
53
1.12
49574--49623
25
2.0
25
100
0
100
28
12
24
36
1.91
49609--49672
22
3.0
21
82
11
76
40
9
15
34
1.80
51738--51789
20
2.6
20
100
0
104
36
15
5
42
1.71
63999--64037
3
13.0
3
84
10
53
33
0
2
64
1.08
64002--64037
14
2.5
14
90
4
54
33
0
2
63
1.08
65932--66270
131
2.6
129
81
2
410
32
10
15
41
1.82
69300--69329
2
15.0
2
100
0
60
50
0
0
50
1.00
69599--69629
12
2.6
12
94
0
53
74
0
9
16
1.07
69607--69669
28
2.2
29
80
8
76
77
0
15
6
0.96
69623--69669
15
3.3
15
76
11
53
78
0
17
4
0.90
69635--69665
12
2.5
13
94
5
55
80
0
16
3
0.83
71282--71483
40
5.1
40
95
0
368
32
26
17
23
1.97
75408--75481
17
4.4
17
88
6
98
8
16
1
74
1.12
75409--75494
18
4.8
17
80
12
93
6
16
1
75
1.07
75409--75486
35
2.2
34
86
10
113
6
16
1
75
1.07
75437--75519
6
14.2
6
71
14
66
3
15
2
78
1.00
75462--75518
29
2.0
29
83
13
73
1
15
3
78
0.96
75407--75515
17
6.6
17
75
15
77
6
15
1
76
1.08
75437--75519
35
2.4
36
84
11
102
3
15
2
78
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76363--76392
12
2.4
13
88
11
53
30
13
10
46
1.75
78241--78366
47
2.8
45
83
5
155
29
22
7
40
1.82
78414--78520
40
2.7
40
98
0
205
31
28
17
22
1.97
81864--82285
112
3.8
111
87
1
565
30
23
16
30
1.96
84314--84370
24
2.4
24
87
0
87
36
7
28
28
1.83
86512--86576
32
2.0
33
84
3
87
26
15
26
32
1.95
89491--89647
61
2.5
61
82
4
161
26
26
15
31
1.96
94886--94931
22
2.1
22
91
0
74
52
13
0
34
1.40
94924--94957
2
17.0
2
100
0
68
50
0
0
50
1.00
98682--98848
32
5.2
32
79
1
174
34
14
11
39
1.83

Tables:   1

The End!