Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001255.1 Hibiscus syriacus cultivar Beakdansim tig00002466_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64493

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1030--1067
20
1.9
19
94
5
67
28
15
39
15
1.89
1121--1202
32
2.6
32
92
0
128
13
24
24
37
1.91
3922--4188
8
34.1
8
66
23
79
49
3
4
41
1.40
3925--4270
14
24.9
14
74
4
234
49
3
4
42
1.39
3926--4270
28
12.4
28
75
5
261
49
3
4
42
1.39
3926--4270
42
8.3
40
79
10
266
49
3
4
42
1.39
3926--4106
56
3.2
56
94
0
317
51
3
3
41
1.36
3968--4228
83
3.1
83
85
3
294
49
3
5
40
1.43
7681--7719
20
2.0
20
89
0
60
17
48
7
25
1.74
10572--10610
2
19.5
2
100
0
78
48
0
0
51
1.00
17877--19060
296
4.0
296
92
1
1919
43
20
12
23
1.86
25920--25957
11
3.5
11
82
10
51
2
15
0
81
0.80
26844--26911
3
22.7
3
93
0
118
63
0
0
36
0.95
27157--27790
114
5.5
114
98
1
1198
28
19
14
37
1.91
28476--28616
50
2.8
50
97
0
273
39
22
14
24
1.91
28526--29029
133
3.8
133
99
0
990
36
21
14
28
1.92
30166--30199
1
34.0
1
93
0
59
0
2
0
97
0.19
30139--30203
28
2.3
28
81
0
76
3
12
0
84
0.73
30151--30202
7
7.3
7
84
2
50
3
7
0
88
0.62
42019--42056
11
3.5
11
82
10
51
2
15
0
81
0.80
42943--43019
3
25.7
3
94
0
136
63
0
0
36
0.95
44987--45034
15
3.5
15
78
16
52
37
0
0
62
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45053--45095
21
2.1
20
82
4
50
60
2
4
32
1.30
49006--49033
2
14.0
2
100
0
56
50
0
0
50
1.00
49638--49690
2
26.5
2
100
0
106
49
0
0
50
1.00
59135--59159
11
2.3
11
100
0
50
8
8
40
44
1.63
59753--59790
20
1.9
20
88
0
58
21
26
10
42
1.85
59997--60033
15
2.4
16
82
17
51
59
5
0
35
1.20
60406--60501
2
47.5
2
89
6
149
48
3
0
47
1.17
60775--60854
36
2.2
36
84
2
97
37
6
6
50
1.53
61128--61159
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!