Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001258.1 Hibiscus syriacus cultivar Beakdansim tig00002476_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144162

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2257--2294
15
2.6
15
87
4
51
39
7
18
34
1.80
2686--2734
20
2.4
21
89
3
73
18
0
12
69
1.19
10489--10551
32
2.0
32
96
0
117
28
9
9
52
1.65
13319--13343
13
1.9
13
100
0
50
40
40
0
20
1.52
18086--18169
31
2.7
31
77
1
89
36
13
9
40
1.77
19552--19587
7
5.3
7
93
3
56
72
0
25
2
0.98
19556--19605
14
3.6
14
86
0
55
58
0
36
6
1.23
25080--25128
20
2.4
21
96
3
91
53
18
16
12
1.73
25482--25869
184
2.1
184
92
1
636
42
2
8
46
1.49
27958--28070
54
2.1
54
83
3
138
28
15
24
31
1.95
30929--30977
20
2.4
21
96
3
91
53
18
16
12
1.73
34912--34944
16
2.1
16
100
0
66
57
24
12
6
1.57
35010--35084
10
7.7
10
69
21
61
57
21
12
9
1.62
35014--35078
16
4.1
16
95
0
121
56
23
12
7
1.61
35828--35875
10
4.4
10
78
19
51
54
22
12
10
1.68
35835--35865
14
2.2
14
94
0
53
54
22
12
9
1.67
35815--35876
24
2.6
24
89
5
90
54
19
12
12
1.70
39678--39759
29
2.8
29
78
8
78
52
3
0
43
1.18
53112--53171
31
1.9
31
89
0
93
46
13
5
35
1.65
55930--55959
3
10.3
3
92
7
53
66
0
0
33
0.92
60893--60934
4
11.0
4
85
10
61
23
2
23
50
1.61
60915--61117
88
2.3
88
88
5
297
28
19
18
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70810--70847
6
6.3
6
90
0
58
28
0
55
15
1.41
72387--72445
28
2.1
28
83
0
73
37
23
11
27
1.90
72895--72969
35
2.1
35
95
0
132
30
8
14
46
1.73
74847--74891
21
2.1
21
87
0
63
31
28
24
15
1.96
75447--75495
2
24.5
2
100
0
98
51
0
0
48
1.00
75991--76068
31
2.5
30
81
4
75
23
19
21
35
1.96
76041--76140
30
3.3
30
90
2
139
22
22
25
31
1.98
76055--76143
30
3.0
30
93
1
144
20
21
25
32
1.97
77175--77217
21
2.0
21
81
0
50
30
30
25
13
1.94
77197--77344
66
2.2
66
93
2
253
29
27
27
16
1.97
77953--78011
22
2.6
23
94
2
102
18
27
30
23
1.98
84054--84096
21
2.0
21
81
0
50
30
30
25
13
1.94
84076--84223
66
2.2
66
93
2
253
29
27
27
16
1.97
84832--84890
22
2.6
23
94
2
102
18
27
30
23
1.98
94360--94423
31
2.1
31
88
5
94
42
18
7
31
1.79
94660--94701
14
2.9
15
85
3
59
47
11
4
35
1.61
111438--111464
14
1.9
14
100
0
54
22
40
14
22
1.90
119581--119672
31
3.0
29
81
10
94
42
7
5
44
1.56
140100--140172
2
36.5
2
97
0
137
49
0
0
50
1.00

Tables:   1

The End!