Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001259.1 Hibiscus syriacus cultivar Beakdansim tig00002477_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174165

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4600--4657
23
2.5
24
85
2
91
63
10
15
10
1.51
10347--10517
90
1.9
91
91
1
281
22
26
23
26
2.00
15288--15332
17
3.1
14
84
15
56
64
0
20
15
1.29
15290--15332
5
8.6
5
85
14
54
62
0
20
16
1.32
15290--15332
9
4.3
10
81
18
54
62
0
20
16
1.32
28911--28952
22
1.9
22
90
0
66
35
42
2
19
1.64
34602--34713
35
3.2
35
79
3
118
27
32
4
35
1.77
36000--36041
22
1.9
22
90
9
68
16
9
4
69
1.33
36359--36403
19
2.3
20
81
11
58
82
13
4
0
0.82
39656--40769
403
2.8
403
97
0
2104
33
18
18
29
1.94
41410--41450
11
3.7
11
87
6
57
17
12
0
70
1.16
45111--45157
24
1.9
25
83
12
62
46
2
8
42
1.46
50954--50978
12
2.1
12
100
0
50
68
0
8
24
1.16
77048--77072
8
3.1
8
100
0
50
76
0
24
0
0.80
77031--77082
16
3.1
16
81
13
52
75
1
21
1
1.00
82773--82830
23
2.5
24
85
2
91
63
10
15
10
1.51
87467--87637
90
1.9
91
90
1
272
23
26
22
26
2.00
92191--92233
6
7.2
6
84
10
61
0
20
0
79
0.74
92191--92233
19
2.4
17
92
7
68
0
20
0
79
0.74
92418--92462
17
3.1
14
84
15
56
64
0
20
15
1.29
92420--92462
5
8.6
5
85
14
54
62
0
20
16
1.32
92420--92462
9
4.3
10
81
18
54
62
0
20
16
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109151--109204
23
2.4
22
79
14
65
38
11
7
42
1.68
114285--114331
24
1.9
25
83
12
62
46
2
8
42
1.46
129992--130025
16
2.1
16
88
0
50
8
17
0
73
1.08
139901--139947
25
2.0
24
84
16
62
74
8
17
0
1.05
145495--145545
26
1.9
27
88
11
79
78
3
17
0
0.90
149645--149678
16
2.1
16
88
0
50
8
17
0
73
1.08
159261--159328
24
2.8
24
82
11
84
1
17
7
73
1.13
161229--161274
24
1.9
24
81
0
56
28
26
15
30
1.96
161236--161282
24
2.0
24
86
0
67
25
25
14
34
1.94
161253--161298
24
1.9
24
82
8
58
34
21
10
32
1.88
165724--165775
24
2.2
24
82
6
61
7
15
17
59
1.58
168096--168142
18
2.7
18
83
12
62
0
14
2
82
0.75
168099--168143
24
2.0
22
91
8
72
0
13
4
82
0.82
171832--171883
6
8.7
6
80
6
52
1
15
5
76
1.05

Tables:   1

The End!