genome.fa.s126.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000126.1 Hibiscus syriacus cultivar Beakdansim tig00000226_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91585

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4690--4764	22	3.5	22	71	10	75	40	25	16	18	1.91
4697--4780	41	2.0	42	84	11	111	41	23	17	16	1.89
4797--4889	20	4.6	20	72	2	78	37	23	22	16	1.93
4756--4889	61	2.2	61	95	2	243	36	23	21	18	1.95
4845--4905	20	3.0	21	70	4	70	34	24	18	22	1.96
4817--4914	41	2.4	41	89	0	142	36	22	19	21	1.95
7104--7151	20	2.4	20	100	0	96	56	0	4	39	1.19
8493--8594	29	3.4	28	72	10	78	12	4	21	60	1.51
18200--18233	12	2.8	12	95	0	59	32	0	32	35	1.58
18783--18807	6	4.2	6	100	0	50	20	16	64	0	1.30
18940--18986	23	2.0	23	91	0	76	53	0	0	46	1.00
18984--19038	12	4.6	12	83	0	65	27	49	12	10	1.74
21990--22029	21	1.9	21	90	10	64	30	5	7	57	1.48
24653--24690	15	2.6	14	84	15	58	50	28	0	21	1.49
26368--26412	21	2.1	21	87	0	63	31	28	24	15	1.96
26987--27021	18	1.9	18	88	11	54	54	5	17	22	1.64
27078--27121	22	2.0	22	86	4	63	45	0	22	31	1.53
28005--28306	149	2.0	149	99	0	595	28	16	19	34	1.94
28285--28329	23	2.0	23	86	0	63	20	24	28	26	1.99
29912--29979	23	2.9	23	84	2	82	22	26	29	22	1.99
36607--36682	23	3.5	22	76	5	82	25	23	25	26	2.00
43194--43233	21	1.9	21	94	0	71	30	5	5	60	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44929--44953	10	2.5	10	100	0	50	0	8	20	72	1.10
49919--50218	35	8.5	37	76	11	176	44	3	6	45	1.45
49980--50028	26	1.9	26	87	4	73	40	4	8	46	1.52
49919--50246	66	4.7	73	74	18	252	44	2	6	46	1.42
49919--50218	34	8.5	35	75	11	217	44	3	6	45	1.45
49919--50113	77	2.6	75	79	14	215	43	3	7	46	1.46
49911--50111	40	5.3	39	75	15	158	43	2	6	46	1.46
49952--50118	79	2.2	77	85	8	200	44	2	5	46	1.43
50227--50263	7	5.6	7	90	3	51	35	0	0	64	0.94
50227--50279	12	4.2	13	78	9	56	32	1	0	66	1.03
50215--50290	10	7.3	11	72	19	56	27	2	0	69	1.01
50227--50297	21	3.2	22	80	13	67	28	2	0	69	1.03
50240--50303	31	2.0	31	82	14	76	23	4	0	71	1.04
51007--51037	13	2.4	13	100	0	62	6	48	38	6	1.55
51658--51687	15	1.9	16	93	6	53	16	3	6	73	1.18
52720--52759	16	2.5	16	88	8	55	5	15	2	77	1.04
53373--53417	19	2.4	19	92	3	74	11	13	8	66	1.44
56768--57548	84	9.5	83	80	6	908	29	24	21	24	1.99
56768--57570	164	4.9	164	95	0	1320	29	24	21	24	1.99
58204--58383	37	4.6	39	75	20	137	43	3	7	46	1.48
58221--58513	35	8.3	34	72	17	190	45	3	6	44	1.45
58282--58330	26	1.9	26	87	4	73	40	4	8	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58255--58383	42	3.1	42	78	13	144	43	3	6	47	1.44
58335--58507	34	5.1	35	75	12	125	47	2	5	44	1.40
58254--58415	81	2.1	81	86	9	230	43	3	6	47	1.44
58267--58439	77	2.2	79	81	10	194	45	4	6	44	1.48
58528--58564	7	5.6	7	90	3	51	35	0	0	64	0.94
58528--58580	12	4.2	13	78	9	56	32	1	0	66	1.03
58516--58591	10	7.3	11	72	19	56	27	2	0	69	1.01
58528--58598	21	3.2	22	80	13	67	28	2	0	69	1.03
58541--58604	31	2.0	31	82	14	76	23	4	0	71	1.04
59307--59337	13	2.4	13	100	0	62	6	48	38	6	1.55
59965--59994	15	1.9	16	93	6	53	16	3	6	73	1.18
63658--63702	23	2.0	22	83	16	56	2	6	31	60	1.35
64929--64965	17	2.2	17	95	0	65	48	10	27	13	1.75
65154--65244	32	2.9	31	77	6	85	25	27	26	20	1.99
68750--68811	3	20.7	3	77	12	65	58	4	0	37	1.20
69057--69406	136	2.6	136	89	2	521	28	21	15	34	1.94
69608--69701	21	5.2	19	65	26	51	40	18	20	21	1.92
69595--69784	36	5.1	38	86	7	228	36	15	20	27	1.93
69560--69786	78	3.0	78	78	8	245	36	15	19	28	1.93
69789--70026	76	3.1	77	82	6	290	41	12	15	31	1.83
69913--70035	36	3.3	37	72	6	115	39	13	17	29	1.88
83152--83222	19	3.9	18	75	14	56	69	0	2	28	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83260--83300	21	1.9	22	90	5	66	75	0	4	19	0.98
83928--83990	19	3.2	19	75	4	54	53	12	0	33	1.39
85851--85876	8	3.2	8	100	0	52	84	0	0	15	0.62
91400--91450	7	7.4	7	80	10	52	70	0	1	27	0.98
91474--91514	18	2.3	18	91	0	64	73	0	2	24	0.96

Tables:   1

The End!