genome.fa.s1260.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001260.1 Hibiscus syriacus cultivar Beakdansim tig00002478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107795

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6595--6630	2	18.0	2	100	0	72	50	0	0	50	1.00
8660--8703	23	1.9	23	86	9	63	18	27	6	47	1.73
9127--9174	19	2.6	19	71	28	50	60	4	2	33	1.27
9844--9885	20	2.2	19	84	16	52	47	0	0	52	1.00
10295--10360	30	2.2	30	84	7	82	40	0	3	56	1.15
11705--11752	20	2.6	19	84	12	64	52	0	2	45	1.12
12677--12716	3	13.7	3	94	5	73	67	0	0	32	0.91
14445--14507	13	4.8	13	72	14	58	33	3	23	39	1.71
14625--14682	24	2.4	25	70	16	59	56	3	1	37	1.26
22302--22332	4	7.8	4	100	0	62	25	0	22	51	1.48
23769--23825	29	2.0	29	100	0	114	50	3	14	31	1.59
26417--26447	12	2.6	12	89	0	53	19	6	0	74	1.03
34971--35171	36	5.5	36	73	11	167	42	3	8	45	1.53
35175--35251	41	1.9	41	91	2	129	48	3	6	41	1.47
36539--36583	11	4.1	11	88	5	65	33	0	0	66	0.92
36538--36703	12	11.5	15	72	23	62	28	1	1	68	1.07
36618--36679	3	20.7	3	100	0	124	32	0	0	67	0.91
37755--37787	17	1.9	17	93	0	57	6	12	9	72	1.26
38408--38452	19	2.4	19	92	3	74	11	13	8	66	1.44
41828--42726	84	10.8	81	78	6	804	29	24	20	25	1.99
41820--42736	168	5.5	167	88	2	1242	29	24	20	24	1.99
43254--43453	36	5.5	36	76	8	190	43	4	8	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43456--43532	41	1.9	41	91	2	129	48	3	6	41	1.47
43317--43532	38	5.4	41	76	15	143	44	2	8	44	1.48
44825--44869	11	4.1	11	88	5	65	33	0	0	66	0.92
44824--44947	15	8.1	15	67	27	50	27	1	2	68	1.11
44904--44929	3	8.7	3	100	0	52	30	0	0	69	0.89
45814--45851	5	7.8	5	83	16	53	15	2	0	81	0.80
46038--46093	29	1.9	29	82	13	71	37	5	1	55	1.33
46356--46407	22	2.4	20	76	17	50	32	7	0	59	1.26
46401--46449	15	3.2	16	80	11	59	20	4	4	71	1.19
51339--51491	47	3.2	48	79	7	145	35	16	16	31	1.91
52133--52182	19	2.6	19	87	0	73	42	26	2	30	1.66
60607--60642	17	2.1	18	89	5	56	44	2	0	52	1.15
69758--69808	17	2.9	17	81	18	61	37	0	0	62	0.95
71389--71444	20	2.9	19	78	19	62	39	1	0	58	1.08
71381--71448	31	2.2	31	86	7	93	39	1	1	57	1.17
71391--71447	11	5.4	11	74	19	50	36	1	0	61	1.07
71395--71444	20	2.6	19	84	12	66	38	2	0	60	1.09
71507--71531	13	1.9	13	100	0	50	68	0	0	32	0.90
72170--72238	32	2.2	32	86	5	95	55	2	1	40	1.24
72169--72233	19	3.3	19	71	23	53	53	1	1	43	1.19
72170--72254	31	2.7	31	83	5	82	55	3	1	40	1.25
75053--75083	16	1.9	16	100	0	62	58	22	12	6	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75149--75203	16	3.4	16	89	0	83	58	20	10	10	1.62
76698--76753	24	2.3	24	87	0	76	55	19	8	16	1.67
76988--77024	19	1.9	19	100	0	74	40	5	27	27	1.78
77188--77576	214	1.8	209	87	5	586	31	13	16	38	1.87
77989--78035	18	2.7	18	93	3	78	27	31	8	31	1.87
78693--78738	19	2.4	19	96	0	83	21	39	17	21	1.93
82247--82278	2	16.0	2	93	0	55	46	0	3	50	1.17
87271--87297	3	9.0	3	100	0	54	66	0	0	33	0.92
91426--91456	2	15.5	2	100	0	62	48	0	0	51	1.00
91929--92007	37	2.2	36	84	11	99	31	26	20	21	1.98
92046--92159	35	3.3	34	80	4	131	28	20	19	32	1.97
92140--92277	33	4.0	34	69	15	86	30	28	14	26	1.95
96039--96522	188	2.6	186	78	8	464	39	9	19	31	1.84
106216--106591	139	2.7	140	83	5	460	35	12	11	39	1.80

Tables:   1

The End!