Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001261.1 Hibiscus syriacus cultivar Beakdansim tig00002479_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85243

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7586--7612
2
13.5
2
100
0
54
51
0
48
0
1.00
8777--8815
2
20.0
2
94
5
71
48
0
0
51
1.00
9000--9046
21
2.2
21
84
0
67
19
23
17
40
1.91
9042--9087
20
2.3
20
85
7
58
39
19
17
23
1.92
12425--12493
20
3.5
20
92
4
113
36
26
21
15
1.94
12406--12545
33
4.0
33
79
14
129
38
22
23
15
1.92
12485--12560
33
2.3
33
93
2
125
44
19
22
13
1.85
12686--12722
14
2.6
14
86
0
56
48
21
0
29
1.50
14076--14185
42
2.6
42
75
5
107
23
19
36
20
1.95
14668--14754
20
4.3
20
92
2
122
37
19
18
24
1.94
14888--14937
20
2.5
20
93
0
82
24
18
22
36
1.95
16641--16685
23
2.0
23
90
0
72
24
26
26
22
2.00
16653--16967
149
2.1
149
96
1
578
34
21
16
26
1.95
17719--17763
21
2.1
21
87
0
63
15
24
28
31
1.96
19313--19376
20
3.2
20
86
2
94
50
21
15
12
1.77
19394--19440
20
2.3
20
88
0
67
21
19
23
36
1.95
20029--20100
20
3.5
20
78
10
92
19
19
20
40
1.92
20097--20142
21
2.2
21
92
0
74
39
17
26
17
1.91
21494--21532
16
2.4
16
95
0
69
76
0
5
17
0.96
24383--24411
14
2.0
15
93
6
51
68
10
0
20
1.18
26381--26458
37
2.1
37
97
0
147
20
5
25
48
1.70
28892--28931
19
2.0
20
90
4
64
35
0
2
62
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31363--31522
80
2.0
80
100
0
320
35
22
12
30
1.91
32349--32433
2
42.5
2
100
0
170
49
0
0
50
1.00
40436--40499
5
14.2
5
72
26
54
42
0
56
1
1.09
40433--40497
8
8.5
8
75
21
59
44
0
53
1
1.09
40433--40499
13
5.1
13
76
21
68
43
0
55
1
1.09
41832--41874
18
2.4
18
96
0
77
20
23
34
20
1.96
42650--42787
22
6.8
22
74
14
109
30
28
21
19
1.98
42650--42747
40
2.5
40
87
0
142
30
30
20
18
1.96
42669--42788
62
1.9
62
85
8
163
30
27
22
19
1.98
43284--43335
20
2.6
20
93
0
95
25
26
21
26
1.99
43340--43502
63
2.6
63
81
2
157
26
18
20
34
1.96
51718--51829
18
5.8
18
75
15
89
29
33
21
16
1.95
51736--51851
22
5.7
21
79
8
91
30
31
21
16
1.95
51717--51853
40
3.4
39
74
18
138
29
31
20
18
1.97
51780--51831
18
2.9
18
97
0
95
28
38
21
11
1.88
52395--52515
63
1.9
63
84
0
161
23
19
22
34
1.96
55875--55932
30
1.9
30
85
3
80
44
5
10
39
1.61
60147--60185
18
2.3
18
87
12
57
20
0
7
71
1.10
72104--72168
33
2.0
33
100
0
130
12
15
15
56
1.67
79841--79903
23
2.6
22
80
14
63
15
4
71
7
1.27
83364--83411
23
2.1
23
92
0
78
47
0
0
52
1.00
83353--83377
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84026--84060
16
2.2
16
89
0
52
57
8
14
20
1.63

Tables:   1

The End!