Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001265.1 Hibiscus syriacus cultivar Beakdansim tig00002483_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88534

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1949--1996
18
2.7
17
84
12
53
27
20
27
25
1.99
4725--4807
23
3.6
23
90
8
125
28
25
24
21
1.99
8525--8564
21
1.9
21
85
10
55
35
10
2
52
1.48
10470--10518
19
2.7
17
84
9
53
26
20
28
24
1.99
10490--10691
65
3.1
64
78
12
216
25
19
24
30
1.98
12523--12562
2
20.0
2
100
0
80
50
0
0
50
1.00
14224--14251
9
3.1
9
100
0
56
42
10
0
46
1.38
14476--14520
23
2.0
23
100
0
90
28
31
0
40
1.57
16400--16524
60
2.1
60
83
4
155
32
17
20
28
1.96
20831--20888
20
2.9
20
100
0
116
25
18
29
25
1.98
24121--24176
23
2.6
21
85
5
67
44
0
1
53
1.11
31579--31683
53
2.0
53
84
5
140
39
15
14
31
1.87
33668--33700
16
2.1
16
100
0
66
57
24
12
6
1.57
33766--33820
10
5.1
10
77
16
56
58
23
12
5
1.55
33769--33828
24
2.5
24
94
2
104
58
25
11
5
1.53
34091--34150
24
2.4
24
88
5
93
56
15
11
16
1.67
34082--34151
14
5.1
14
81
16
85
55
15
12
15
1.69
47894--47948
21
2.7
21
82
2
58
60
1
3
34
1.25
50048--50073
10
2.6
10
100
0
52
30
30
30
7
1.85
61074--61099
2
13.0
2
100
0
52
50
0
0
50
1.00
65321--65345
13
1.9
13
100
0
50
12
8
0
80
0.92
69679--69730
23
2.3
23
90
3
79
28
1
11
57
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69689--69727
11
3.5
11
80
19
53
28
0
10
61
1.28
69938--70155
108
2.0
108
91
1
357
38
9
7
44
1.65
70398--70444
22
2.2
20
85
7
58
23
2
8
65
1.31
75628--75675
19
2.5
19
96
0
87
18
18
18
43
1.88
76467--76527
21
3.0
21
75
2
61
44
24
16
14
1.85
77856--77894
18
2.2
18
90
0
60
15
0
66
17
1.25
79725--79790
29
2.3
29
91
0
105
24
30
12
33
1.91
83069--83104
2
19.0
2
88
11
58
50
0
0
50
1.00

Tables:   1

The End!