Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001266.1 Hibiscus syriacus cultivar Beakdansim tig00002484_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63091

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1308--1432
60
2.1
60
83
8
157
35
16
16
32
1.91
2324--2350
14
1.9
14
100
0
54
14
22
22
40
1.90
6356--6466
58
1.9
58
87
3
161
36
18
15
30
1.91
11167--11222
25
2.2
25
83
0
67
32
12
12
42
1.80
12839--12869
15
2.1
15
100
0
62
38
9
12
38
1.77
23807--23847
18
2.2
19
91
4
66
53
24
0
21
1.46
29635--29680
10
4.5
10
83
5
56
69
4
4
21
1.24
29633--29681
21
2.3
21
82
0
62
69
4
4
22
1.23
29804--30304
248
2.0
253
90
7
793
43
7
3
45
1.50
37231--37343
59
1.9
59
82
7
140
30
23
7
39
1.81
37553--37652
50
2.0
50
90
3
157
40
4
21
35
1.72
38174--38348
60
2.9
59
78
10
183
42
4
18
34
1.69
38347--38452
53
2.0
53
100
0
212
26
15
20
37
1.92
45423--45531
48
2.3
48
87
4
150
49
13
4
32
1.63
48957--49001
2
23.0
2
88
4
65
51
0
0
48
1.00
51255--51533
153
1.8
153
85
0
396
22
22
16
38
1.93
51257--51690
153
2.9
149
77
10
362
23
21
16
38
1.93
53839--53883
23
1.9
24
86
4
65
22
13
15
48
1.79
54668--54693
3
8.7
3
100
0
52
30
0
34
34
1.58
55324--55374
26
2.0
26
92
0
84
49
3
13
33
1.61
58110--58957
132
6.5
132
81
4
954
22
19
28
29
1.98
60958--61013
20
2.8
20
88
0
76
30
28
10
30
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61257--61324
20
3.3
20
72
8
64
27
11
26
33
1.91

Tables:   1

The End!