genome.fa.s1268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001268.1 Hibiscus syriacus cultivar Beakdansim tig00002489_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64209

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2639--2692	22	2.5	22	84	0	81	18	14	25	40	1.89
2730--2783	21	2.6	21	100	0	108	24	16	29	29	1.97
2775--2909	41	3.2	42	84	9	177	19	18	22	39	1.93
2835--2912	22	3.6	22	72	10	88	19	16	25	38	1.92
2512--3042	196	2.8	190	81	12	531	21	19	22	37	1.95
2754--3042	147	1.9	146	85	10	397	20	17	23	37	1.94
2901--2962	20	3.0	21	71	4	72	22	17	25	33	1.96
2733--2950	84	2.6	84	76	9	223	21	17	24	36	1.94
2973--3039	18	3.5	18	70	20	55	14	20	22	41	1.89
3120--3146	6	4.5	6	100	0	54	33	51	14	0	1.43
3370--3417	19	2.5	19	100	0	96	41	18	20	18	1.90
3402--3486	41	2.0	41	86	6	118	37	23	21	17	1.94
5583--5610	2	14.0	2	100	0	56	50	0	0	50	1.00
14446--14507	3	20.7	3	89	0	97	32	4	0	62	1.16
20132--20214	29	2.8	29	92	1	139	43	9	14	32	1.78
24898--24980	29	2.8	29	92	1	139	43	9	14	32	1.78
26252--26303	27	1.9	27	84	0	68	42	0	0	57	0.98
27908--28059	20	7.6	20	81	7	182	36	25	19	19	1.95
27908--28059	40	3.8	40	86	4	216	36	25	19	19	1.95
28617--28688	20	3.5	20	81	5	65	51	19	16	12	1.76
28632--28691	21	2.9	21	80	7	70	50	18	20	11	1.77
28715--28846	19	7.1	19	80	11	130	12	21	20	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32482--32540	19	3.4	19	68	22	65	47	18	20	13	1.82
32486--32561	33	2.3	33	90	0	116	48	21	19	10	1.78
32567--32681	19	6.3	19	77	11	114	13	24	17	45	1.84
32606--32681	39	2.0	38	86	2	107	15	22	15	46	1.84
32696--32769	20	3.7	20	69	16	53	24	14	25	35	1.94
35239--35298	24	2.5	24	83	0	84	38	18	18	25	1.93
36157--36196	20	2.0	20	90	0	62	37	15	20	27	1.92
36164--36206	20	2.2	20	82	0	50	34	16	20	27	1.94
36212--36256	20	2.2	20	96	0	81	15	20	26	37	1.92
44662--44727	29	2.3	28	79	7	69	22	6	3	68	1.26
51544--51576	10	3.3	10	95	0	57	15	45	0	39	1.46
53646--53688	20	2.1	21	91	4	70	32	13	6	46	1.71
55147--55183	2	18.5	2	100	0	74	48	0	0	51	1.00
61317--61355	19	2.0	20	90	5	62	53	20	0	25	1.45
63010--63063	11	4.7	11	82	14	65	27	0	0	72	0.85
63012--63058	14	3.6	14	80	16	64	27	0	0	72	0.85
63012--63063	3	18.0	3	81	15	65	28	0	0	71	0.87
63018--63055	8	4.6	8	87	6	58	28	0	0	71	0.87

Tables:   1

The End!