Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001269.1 Hibiscus syriacus cultivar Beakdansim tig00002490_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72248
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Found at i:4083 original size:20 final size:20
Alignment explanation
Indices: 4055--4095 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
4045 AAACTTATTT
4055 AGTGCTTTGTTATT-GAGATC
1 AGTGCTTTGTT-TTCGAGATC
*
4075 AGTGTTTTGTTTTCGAGATC
1 AGTGCTTTGTTTTCGAGATC
4095 A
1 A
4096 TTTCTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.20, C:0.10, G:0.24, T:0.46
Consensus pattern (20 bp):
AGTGCTTTGTTTTCGAGATC
Found at i:15725 original size:61 final size:65
Alignment explanation
Indices: 15629--15773 Score: 165
Period size: 61 Copynumber: 2.3 Consensus size: 65
15619 CTGCACTAAG
* * * *
15629 CTTACGCTCTAGTACT-ATTCTGTATATTCCACATAAAGTCGTGCCCACCACCTACAC-TAG-GT
1 CTTACACTCTAGTGCTAATTCTGGATATGCCACATAAAGTCGTGCCCACCACCTACACTTAGTGT
* * * *
15691 -TTACACTCTAGTGCTAATTC-GGATATGCCACATAAGGTTGTGCCCACCACGTGCACTTAGTGT
1 CTTACACTCTAGTGCTAATTCTGGATATGCCACATAAAGTCGTGCCCACCACCTACACTTAGTGT
*
15754 CCTTACACACTAGTGCTAAT
1 -CTTACACTCTAGTGCTAAT
15774 ATAAATCTGT
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
61 43 0.62
62 7 0.10
63 2 0.03
65 17 0.25
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (65 bp):
CTTACACTCTAGTGCTAATTCTGGATATGCCACATAAAGTCGTGCCCACCACCTACACTTAGTGT
Found at i:32240 original size:6 final size:6
Alignment explanation
Indices: 32231--32267 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
32221 TTTAAAGCTA
32231 CCCATT CCCATT CCCATT CCCATT CCCATT CCCATT C
1 CCCATT CCCATT CCCATT CCCATT CCCATT CCCATT C
32268 TCTTTGTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.51, G:0.00, T:0.32
Consensus pattern (6 bp):
CCCATT
Found at i:37472 original size:36 final size:36
Alignment explanation
Indices: 37395--37474 Score: 142
Period size: 36 Copynumber: 2.2 Consensus size: 36
37385 CACAATACTC
*
37395 TGTTTCTTGTTATCAAATGCATTTGATAATTGATAG
1 TGTTTTTTGTTATCAAATGCATTTGATAATTGATAG
*
37431 TGTTTTTTTTTATCAAATGCATTTGATAATTGATAG
1 TGTTTTTTGTTATCAAATGCATTTGATAATTGATAG
37467 TGTTTTTT
1 TGTTTTTT
37475 AGTAGCCATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.25, C:0.06, G:0.15, T:0.54
Consensus pattern (36 bp):
TGTTTTTTGTTATCAAATGCATTTGATAATTGATAG
Found at i:40261 original size:2 final size:2
Alignment explanation
Indices: 40254--40283 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
40244 ACGATAAAAG
40254 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
40284 CTTTCTAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:42145 original size:45 final size:46
Alignment explanation
Indices: 42064--42156 Score: 134
Period size: 45 Copynumber: 2.0 Consensus size: 46
42054 CATGCTTATA
42064 ATACATCATTATACCATTTCCATTATGGCATCCTTTCATGCCTCTT
1 ATACATCATTATACCATTTCCATTATGGCATCCTTTCATGCCTCTT
* ** * *
42110 ATACATTATTATA-CATTTCTTTTATGGCATTCTTTCATGCCTTTT
1 ATACATCATTATACCATTTCCATTATGGCATCCTTTCATGCCTCTT
42155 AT
1 AT
42157 GTTTTGTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
45 30 0.71
46 12 0.29
ACGTcount: A:0.24, C:0.23, G:0.06, T:0.47
Consensus pattern (46 bp):
ATACATCATTATACCATTTCCATTATGGCATCCTTTCATGCCTCTT
Found at i:42153 original size:22 final size:22
Alignment explanation
Indices: 42086--42157 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
42076 ACCATTTCCA
* *
42086 TTATGGCATCCTTTCATGCCTC
1 TTATGGCATTCTTTCATGCCTT
* * **
42108 TTAT-ACATTATTATACATTTCTT
1 TTATGGCATTCTT-T-CATGCCTT
42131 TTATGGCATTCTTTCATGCCTT
1 TTATGGCATTCTTTCATGCCTT
42153 TTATG
1 TTATG
42158 TTTTGTTTAC
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
21 5 0.14
22 16 0.43
23 10 0.27
24 6 0.16
ACGTcount: A:0.19, C:0.21, G:0.10, T:0.50
Consensus pattern (22 bp):
TTATGGCATTCTTTCATGCCTT
Found at i:42232 original size:4 final size:4
Alignment explanation
Indices: 42223--42259 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
42213 CATTATATAA
*
42223 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ATAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
42260 TATTTGTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (4 bp):
ACAT
Found at i:42960 original size:59 final size:59
Alignment explanation
Indices: 42773--42980 Score: 353
Period size: 60 Copynumber: 3.5 Consensus size: 59
42763 TTTCCTATAC
* * * *
42773 GGAAATTCATACACTTAGTATGATCTCCTTATCATTTTAGCATAGAAAGTTCCCTTATCT
1 GGAAATTCATACACTTAGTATGATTTCCTTATCATTTT-GCACACAAAGTGCCCTTATCT
*
42833 AGAAATTCATACACTTAGTATGATTTCCTTATCATTTTTGCACACAAAGTGCCCTTATCT
1 GGAAATTCATACACTTAGTATGATTTCCTTATCA-TTTTGCACACAAAGTGCCCTTATCT
42893 GGAAATTCATACACTTAGTATGATTTCCTTATCATTTTGCACACAAAGTGCCCTTATCT
1 GGAAATTCATACACTTAGTATGATTTCCTTATCATTTTGCACACAAAGTGCCCTTATCT
42952 GGAAATTCATACACTTAGTATGATTTCCT
1 GGAAATTCATACACTTAGTATGATTTCCT
42981 CTTTTATGTT
Statistics
Matches: 141, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
59 54 0.38
60 83 0.59
61 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.38
Consensus pattern (59 bp):
GGAAATTCATACACTTAGTATGATTTCCTTATCATTTTGCACACAAAGTGCCCTTATCT
Found at i:43132 original size:79 final size:79
Alignment explanation
Indices: 43020--43302 Score: 399
Period size: 79 Copynumber: 3.6 Consensus size: 79
43010 TTTCAACTTT
* * * * *
43020 GGCATCCTTTCATGCCAATAATGTACCCATATGCATTATTCTGTTATACCGATAATGTACCCATA
1 GGCATCCTTTAATGCCATTAATGCACCCATATGCATTATTCTTTTATGCCGATAATGTACCCATA
43085 TACATATCAGCTAA
66 TACATATCAGCTAA
* * ** *
43099 GGCATCCTTTAATGCCATTAATACACCCGTATGCATTATTCTTTTATGTTGATAATGTACTCATA
1 GGCATCCTTTAATGCCATTAATGCACCCATATGCATTATTCTTTTATGCCGATAATGTACCCATA
*
43164 TACATATCAGTTAA
66 TACATATCAGCTAA
* *
43178 GGCATCTTTTCAA-GCCATTAATGCACTCATATGCATTATTCTTTTATGCCGATAATGTACCCAT
1 GGCATCCTTT-AATGCCATTAATGCACCCATATGCATTATTCTTTTATGCCGATAATGTACCCAT
*
43242 ACACATATCAGCTAA
65 ATACATATCAGCTAA
* *
43257 GGCATCCTTTCATGCCATTAATGCA-CCATGTGCATTATTCTTTTAT
1 GGCATCCTTTAATGCCATTAATGCACCCATATGCATTATTCTTTTAT
43303 TCATTAGTTT
Statistics
Matches: 178, Mismatches: 24, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
78 20 0.11
79 156 0.88
80 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (79 bp):
GGCATCCTTTAATGCCATTAATGCACCCATATGCATTATTCTTTTATGCCGATAATGTACCCATA
TACATATCAGCTAA
Found at i:43257 original size:158 final size:157
Alignment explanation
Indices: 42980--43302 Score: 450
Period size: 158 Copynumber: 2.1 Consensus size: 157
42970 TATGATTTCC
** * * * *
42980 TCTTTTATGTTGATAATGCACCCATATGTATTTCAACTTTGGCATCCTTTCATGCCAATAATGTA
1 TCTTTTATGTTGATAATGCACCCATATACATATCAACTTAGGCATCCTTTCAAGCCAATAATGCA
*
43045 CCCATATGCATTATTCTGTTATACCGATAATGTACCCATATACATATCAGCTAAGGCATCCTTTA
66 CCCATATGCATTATTCTGTTATACCGATAATGTACCCATACACATATCAGCTAAGGCATCCTTTA
*
43110 ATGCCATTAATACACCCGTATGCATTAT
131 ATGCCATTAATACA-CCATATGCATTAT
* * * * *
43138 TCTTTTATGTTGATAATGTACTCATATACATATC-AGTTAAGGCATCTTTTCAAGCCATTAATGC
1 TCTTTTATGTTGATAATGCACCCATATACATATCAACTT-AGGCATCCTTTCAAGCCAATAATGC
* * *
43202 ACTCATATGCATTATTCTTTTATGCCGATAATGTACCCATACACATATCAGCTAAGGCATCCTTT
65 ACCCATATGCATTATTCTGTTATACCGATAATGTACCCATACACATATCAGCTAAGGCATCCTTT
* * *
43267 CATGCCATTAATGCACCATGTGCATTAT
130 AATGCCATTAATACACCATATGCATTAT
43295 TCTTTTAT
1 TCTTTTAT
43303 TCATTAGTTT
Statistics
Matches: 145, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
157 22 0.15
158 123 0.85
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (157 bp):
TCTTTTATGTTGATAATGCACCCATATACATATCAACTTAGGCATCCTTTCAAGCCAATAATGCA
CCCATATGCATTATTCTGTTATACCGATAATGTACCCATACACATATCAGCTAAGGCATCCTTTA
ATGCCATTAATACACCATATGCATTAT
Found at i:43827 original size:22 final size:20
Alignment explanation
Indices: 43780--43855 Score: 84
Period size: 20 Copynumber: 3.8 Consensus size: 20
43770 TCGATGTAAC
* *
43780 ATGGTATCAATACCCTCA-CC
1 ATGGTATCGATACCC-CATCT
*
43800 ATGGTATCGATACCCCTATGTT
1 ATGGTATCGATACCCC-AT-CT
43822 ATGGTATCGATACCCCATCT
1 ATGGTATCGATACCCCATCT
43842 A-GGTATCGATACCC
1 ATGGTATCGATACCC
43856 AAATTAGATT
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
19 14 0.29
20 17 0.35
21 2 0.04
22 16 0.33
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
ATGGTATCGATACCCCATCT
Found at i:43848 original size:19 final size:22
Alignment explanation
Indices: 43800--43855 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 22
43790 TACCCTCACC
*
43800 ATGGTATCGATACCCCTATGTT
1 ATGGTATCGATACCCCTATGCT
43822 ATGGTATCGATACCCC-AT-CT
1 ATGGTATCGATACCCCTATGCT
43842 A-GGTATCGATACCC
1 ATGGTATCGATACCC
43856 AAATTAGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 13 0.39
20 2 0.06
21 2 0.06
22 16 0.48
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (22 bp):
ATGGTATCGATACCCCTATGCT
Found at i:43848 original size:95 final size:95
Alignment explanation
Indices: 43729--43908 Score: 231
Period size: 95 Copynumber: 1.9 Consensus size: 95
43719 ACCTTATTAG
* * *
43729 GGTATCGATACCCTCTTCATGTATCAATACCAAAATTAGCTTCGA-TG-TAACATGGTATCAATA
1 GGTATCGATACCCTCATCAGGTATCAATACCAAAATTAGATTC-ATTGTTAAC-TGGTATCAATA
43792 CCCTCACCATGGTATCGATACCCCTATGTTAT
64 CCCTCACCATGGTATCGATACCCCTATGTTAT
* * * *
43824 GGTATCGATACCC-CATCTAGGTATCGATACCCAAATTAGATTCATTGTTTACTGGTATCGATAC
1 GGTATCGATACCCTCATC-AGGTATCAATACCAAAATTAGATTCATTGTTAACTGGTATCAATAC
* *
43888 CCTTACCATGGTATTGATACC
65 CCTCACCATGGTATCGATACC
43909 ACATTGCTTG
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
94 4 0.05
95 66 0.90
96 3 0.04
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.32
Consensus pattern (95 bp):
GGTATCGATACCCTCATCAGGTATCAATACCAAAATTAGATTCATTGTTAACTGGTATCAATACC
CTCACCATGGTATCGATACCCCTATGTTAT
Found at i:45664 original size:17 final size:16
Alignment explanation
Indices: 45642--45675 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
45632 TAAAAATAGT
45642 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
45659 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
45675 A
1 A
45676 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:52525 original size:17 final size:16
Alignment explanation
Indices: 52503--52536 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
52493 TAAAAACAGT
52503 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
52520 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
52536 A
1 A
52537 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:55469 original size:17 final size:17
Alignment explanation
Indices: 55447--55486 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
55437 TCTATGAGTT
*
55447 TTAATTTAACCCTTAGA
1 TTAATTTAACCCTAAGA
*
55464 TTAATTTAACCCTAATA
1 TTAATTTAACCCTAAGA
55481 TTAATT
1 TTAATT
55487 AGTATATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.45
Consensus pattern (17 bp):
TTAATTTAACCCTAAGA
Found at i:57081 original size:3 final size:3
Alignment explanation
Indices: 57073--57107 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
57063 TCGAAAAAAT
57073 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
57108 TATTATTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:57112 original size:3 final size:3
Alignment explanation
Indices: 57106--57134 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
57096 AATAATAATA
57106 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
57135 AACAATTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:57682 original size:2 final size:2
Alignment explanation
Indices: 57675--57699 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
57665 AATACCTAGC
57675 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
57700 CGAAATCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:58113 original size:10 final size:9
Alignment explanation
Indices: 58083--58112 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
58073 AAATCTAATT
58083 AAAAT-GAA
1 AAAATGGAA
58091 AAAATGGAA
1 AAAATGGAA
58100 AAAATGGAA
1 AAAATGGAA
58109 AAAA
1 AAAA
58113 AAATAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.24
9 16 0.76
ACGTcount: A:0.73, C:0.00, G:0.17, T:0.10
Consensus pattern (9 bp):
AAAATGGAA
Found at i:61369 original size:20 final size:20
Alignment explanation
Indices: 61344--61388 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
61334 TCAGGGGCAT
61344 GGACAATCGAAGAATGATAG
1 GGACAATCGAAGAATGATAG
61364 GGACAATCGAAGAATGATAG
1 GGACAATCGAAGAATGATAG
61384 GGACA
1 GGACA
61389 TTGCATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.44, C:0.11, G:0.31, T:0.13
Consensus pattern (20 bp):
GGACAATCGAAGAATGATAG
Found at i:62052 original size:13 final size:13
Alignment explanation
Indices: 62034--62058 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62024 TTCATGTGAA
62034 TAAAAATTTATCC
1 TAAAAATTTATCC
62047 TAAAAATTTATC
1 TAAAAATTTATC
62059 ACCCTGGGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
TAAAAATTTATCC
Found at i:63766 original size:65 final size:64
Alignment explanation
Indices: 63585--63774 Score: 226
Period size: 65 Copynumber: 3.0 Consensus size: 64
63575 ATCACTATCC
* * * * * *
63585 TTTGAGT-TGTTTATTTTGAAAC-AAATTTTGTCTCTC--AAGACAGTTTCTTTTAAAAAAAATC
1 TTTGAGTATGTTTA-TTAGAAACAAAATTTTGTCTCTCTTGAGACAATTTCTTTTGAGAAAAATA
* *
63646 TTTGAGTATGTTTATCTAGAAACAAAGTTTTATCTCTCTTGAGACAATTTCTTTTGAGAAAAATA
1 TTTGAGTATGTTTAT-TAGAAACAAAATTTTGTCTCTCTTGAGACAATTTCTTTTGAGAAAAATA
* *
63711 TTTGAGTACGTTTACTTGGAAACAAAATTTTGTCTCTCTTGAGACAATTTCTTTTGGAGAAAAA
1 TTTGAGTATGTTTA-TTAGAAACAAAATTTTGTCTCTCTTGAGACAATTTCTTTT-GAGAAAAA
63775 ACCATCTTTG
Statistics
Matches: 110, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
61 8 0.07
62 12 0.11
63 12 0.11
65 69 0.63
66 9 0.08
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.42
Consensus pattern (64 bp):
TTTGAGTATGTTTATTAGAAACAAAATTTTGTCTCTCTTGAGACAATTTCTTTTGAGAAAAATA
Found at i:64780 original size:16 final size:16
Alignment explanation
Indices: 64759--64789 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
64749 ATGCTGCTCA
64759 CACTGCCTGTAACCAC
1 CACTGCCTGTAACCAC
64775 CACTGCCTGTAACCA
1 CACTGCCTGTAACCA
64790 AATCAACCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.42, G:0.13, T:0.19
Consensus pattern (16 bp):
CACTGCCTGTAACCAC
Found at i:66393 original size:15 final size:15
Alignment explanation
Indices: 66373--66401 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
66363 CGCTTTTCAC
66373 TTTTATTTTGTTTTG
1 TTTTATTTTGTTTTG
66388 TTTTATTTTGTTTT
1 TTTTATTTTGTTTT
66402 ATCTTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.10, T:0.83
Consensus pattern (15 bp):
TTTTATTTTGTTTTG
Done.