genome.fa.s1270.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001270.1 Hibiscus syriacus cultivar Beakdansim tig00002491_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60079

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
979--1015	18	2.0	19	89	5	58	13	8	21	56	1.63
6291--6468	89	2.0	89	100	0	356	26	28	22	22	1.99
11007--11075	23	3.0	23	80	0	84	30	24	24	20	1.99
12621--12683	20	2.9	20	77	15	63	23	26	19	30	1.98
12621--12685	24	2.9	22	80	13	71	24	26	18	30	1.98
12734--12763	15	2.1	14	93	6	51	23	16	40	20	1.91
13037--13075	2	19.5	2	100	0	78	51	0	0	48	1.00
17681--17723	14	3.4	13	78	18	54	46	0	2	51	1.13
18616--18657	20	2.2	19	87	8	59	42	7	23	26	1.80
19274--19328	27	2.0	27	89	6	85	25	14	10	49	1.76
19274--19341	27	2.5	27	81	9	77	25	16	11	47	1.80
22706--22819	59	1.9	59	83	0	147	38	9	12	39	1.76
25156--25203	25	2.0	25	83	4	62	14	2	8	75	1.13
27308--27464	21	7.5	21	79	8	169	28	22	23	26	1.99
27308--27464	62	2.5	62	84	7	203	28	22	23	26	1.99
27308--27469	42	3.9	42	87	6	213	27	22	23	26	1.99
45092--45144	21	2.5	21	81	6	72	20	26	18	33	1.96
45134--45180	20	2.3	20	85	3	58	40	17	21	21	1.91
45175--45242	20	3.4	20	81	0	73	25	27	16	30	1.96
45435--45478	22	2.0	22	95	0	79	20	40	15	22	1.90
45761--45798	20	1.9	20	100	0	76	10	15	18	55	1.68
45935--45989	25	2.2	24	78	15	58	20	9	18	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47119--47166	18	2.7	18	93	0	87	27	45	12	14	1.81
47726--47847	19	6.6	19	83	10	128	44	20	21	13	1.86
47746--47847	19	5.6	19	85	11	151	46	19	20	13	1.84
47746--47847	33	2.9	36	85	11	147	46	19	20	13	1.84
47873--47959	20	4.4	20	85	1	113	16	24	22	36	1.94
47886--47985	20	5.1	19	81	10	76	22	20	24	34	1.97
47886--47970	40	2.1	40	82	4	100	20	22	22	35	1.96
48334--48403	21	3.3	20	72	7	59	24	41	15	18	1.89
48350--48430	21	3.9	21	70	0	72	23	37	18	20	1.94
48327--48415	42	2.1	42	89	0	133	23	41	13	21	1.88
49811--49847	14	2.6	15	83	12	51	29	0	21	48	1.50
49972--50023	14	3.5	13	75	25	50	46	21	21	11	1.82
49953--50028	32	2.4	32	88	4	109	43	22	21	13	1.86
49981--50028	18	2.9	17	77	20	57	45	18	22	12	1.83
50047--50142	20	4.8	20	73	5	77	17	18	20	42	1.89
50355--50466	20	5.5	20	74	5	73	23	18	19	38	1.93
50432--50483	20	2.5	21	87	3	70	21	23	17	38	1.93
51254--51307	24	2.2	24	90	0	81	22	16	20	40	1.91
52900--53077	90	1.9	92	90	7	283	48	18	12	20	1.81
54755--54864	34	3.0	39	74	17	117	42	20	23	13	1.87
54780--54843	33	1.9	34	96	3	121	39	21	25	14	1.91
54755--54900	19	8.1	18	70	19	101	43	19	23	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54763--54900	52	2.6	52	87	2	186	42	21	23	13	1.88
55487--55598	20	5.6	20	84	4	73	21	21	20	36	1.95
55505--55598	41	2.3	40	87	1	125	20	22	19	38	1.94
55588--55659	20	3.5	20	80	1	72	37	18	22	22	1.94
55706--55757	21	2.5	21	75	3	61	34	17	26	21	1.95
55548--55777	118	1.9	119	79	6	252	30	20	22	27	1.98
57150--57213	29	2.1	30	80	11	69	15	10	3	70	1.28
59914--59967	27	2.0	28	88	3	83	29	9	14	46	1.76

Tables:   1

The End!