Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001271.1 Hibiscus syriacus cultivar Beakdansim tig00002495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78954

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6889--6927
20
2.0
20
89
0
60
20
15
33
30
1.94
9546--9624
22
3.6
22
81
5
88
24
22
26
26
2.00
9550--9624
21
3.4
21
81
5
87
25
22
25
26
2.00
15370--15457
45
1.9
46
90
2
142
28
18
25
28
1.98
18008--18072
28
2.3
28
100
0
130
35
6
41
16
1.74
20870--21086
45
4.8
45
87
1
310
22
22
11
44
1.84
21190--21408
55
4.0
55
83
2
253
33
18
12
35
1.88
21778--21825
19
2.5
19
96
0
87
27
22
12
37
1.90
26092--26392
135
2.2
135
85
4
419
24
19
11
43
1.85
26088--26393
45
6.8
45
87
3
370
24
19
11
43
1.85
26567--26716
53
2.7
55
88
5
241
34
16
10
38
1.83
45157--45190
12
2.8
12
86
0
50
0
58
0
41
0.98
45161--45189
15
1.9
15
100
0
58
0
55
0
44
0.99
45165--45646
240
2.0
240
98
0
928
34
23
14
27
1.94
45893--46267
20
18.5
20
86
8
336
37
25
19
17
1.93
45974--46267
40
7.2
40
92
3
437
35
27
20
17
1.95
45974--46267
60
4.8
60
91
2
437
35
27
20
17
1.95
46378--46428
6
8.5
6
100
0
102
33
50
15
0
1.44
47183--47285
6
17.2
6
95
0
188
1
15
49
33
1.56
47404--47533
20
6.4
20
78
8
138
16
21
24
36
1.94
47404--47511
40
2.7
40
92
0
180
16
22
23
37
1.93
47417--47537
60
2.0
62
90
6
194
17
22
23
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47417--47595
20
8.9
19
74
12
121
17
21
21
40
1.92
51674--51730
22
2.6
22
100
0
114
29
24
22
22
1.99
57699--57737
20
2.0
20
89
0
60
20
15
33
30
1.94
59236--59320
28
3.1
28
65
27
74
25
15
18
40
1.90
59177--59439
53
5.0
53
89
0
393
25
15
17
40
1.90
59725--59763
20
2.0
20
89
0
60
33
10
23
33
1.88
67217--67281
20
3.2
20
91
0
103
16
23
23
36
1.94
69213--69263
18
2.7
19
85
11
61
47
3
13
35
1.62
70380--70423
21
2.1
21
91
0
70
27
9
11
52
1.67
70643--70700
21
2.8
21
91
0
89
24
39
18
17
1.92
70643--70719
21
3.8
20
84
5
84
24
36
19
19
1.95
71152--71221
34
2.1
32
86
5
95
31
17
30
21
1.96
71697--71739
17
2.6
17
77
3
52
23
11
27
37
1.89
72472--72509
19
2.1
19
85
5
51
39
5
0
55
1.23
72478--72528
16
2.9
17
74
14
50
43
1
0
54
1.11
74887--74928
16
2.5
17
81
14
52
66
2
2
28
1.16

Tables:   1

The End!