genome.fa.s1272.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001272.1 Hibiscus syriacus cultivar Beakdansim tig00002496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116934

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6683--6868	38	4.9	37	77	13	173	44	3	6	44	1.49
6631--6875	39	6.4	38	77	12	209	43	3	8	44	1.51
6841--6936	29	3.2	29	85	12	124	41	2	6	50	1.39
6988--7053	19	3.3	21	70	21	52	27	3	0	69	1.03
8249--8299	15	3.4	15	71	10	50	19	9	1	68	1.27
14898--14936	2	19.5	2	100	0	78	51	0	0	48	1.00
15403--15471	23	3.0	23	76	0	75	18	23	24	33	1.97
16117--16202	36	2.4	36	94	0	145	34	17	3	44	1.66
16138--16197	18	3.3	18	69	17	52	33	20	1	45	1.61
16192--16231	17	2.6	16	81	18	50	30	7	7	55	1.56
16704--16905	31	6.5	31	94	2	309	41	20	16	22	1.90
22378--22594	88	2.5	88	88	0	335	19	26	22	31	1.98
22378--22571	44	4.4	44	92	0	316	20	26	22	30	1.98
22577--22689	39	2.9	39	82	0	127	23	28	15	33	1.94
23291--23329	17	2.3	17	95	0	69	17	10	15	56	1.66
28189--28576	195	2.0	195	94	1	679	28	12	22	36	1.91
30189--30235	10	4.4	11	78	10	53	23	8	19	48	1.75
30189--30229	21	2.0	21	90	0	64	21	9	17	51	1.74
30189--30229	10	4.0	10	84	6	55	21	9	17	51	1.74
30167--30235	11	6.4	11	72	11	54	23	8	21	46	1.79
36804--36845	16	2.7	15	85	14	59	7	28	2	61	1.35
37121--37146	13	2.0	13	100	0	52	23	15	7	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40237--40655	201	2.1	203	93	2	713	34	13	20	31	1.91
47494--47525	6	5.3	6	100	0	64	34	15	50	0	1.45
56036--56099	22	3.0	20	75	11	56	39	26	9	25	1.86
56184--56236	20	2.7	20	74	11	54	35	24	7	32	1.84
56454--56509	20	2.7	22	89	8	82	30	14	28	26	1.95
56543--56614	20	3.7	19	75	5	72	26	12	23	37	1.90
61001--61083	26	3.4	26	77	16	113	31	9	4	54	1.54
61033--61073	21	2.0	21	95	0	73	26	12	7	53	1.64
67515--67575	15	4.3	13	76	21	52	37	0	14	47	1.45
68131--68243	60	1.9	60	81	3	138	35	12	13	38	1.82
69426--69529	53	2.0	53	98	0	199	33	18	5	42	1.74
70587--70618	4	8.0	4	100	0	64	75	0	0	25	0.81
72301--72341	20	2.0	20	100	0	82	46	14	4	34	1.66
72887--72954	19	3.4	19	67	21	57	39	2	5	51	1.41
72877--72963	42	2.1	42	100	0	174	41	4	4	49	1.44
74046--74144	47	2.2	46	90	7	157	23	2	25	49	1.61
77556--77623	2	34.0	2	100	0	136	50	0	0	50	1.00
81311--81377	33	2.0	33	97	0	125	35	19	2	41	1.67
85666--85702	18	2.1	18	94	0	65	48	10	0	40	1.38
91515--91560	16	2.8	16	83	6	56	56	10	2	30	1.46
91562--91649	45	2.0	45	88	0	131	32	21	12	32	1.91
94007--94135	46	2.8	46	79	3	134	30	17	28	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94054--94191	47	2.9	47	77	10	122	32	21	23	21	1.98
94430--94595	78	2.1	79	95	2	298	36	13	5	43	1.68
97743--97777	9	4.1	8	89	10	52	28	0	0	71	0.86
98059--98227	42	4.0	42	89	1	232	26	23	18	31	1.97
98059--98227	84	2.0	84	89	2	259	26	23	18	31	1.97
98234--98277	23	1.9	23	90	0	70	6	22	6	63	1.43
103713--103790	23	3.3	23	78	1	84	32	21	20	25	1.98
106978--107020	14	2.9	15	79	6	61	41	6	20	30	1.79
107022--107055	14	2.4	14	95	0	59	23	20	20	35	1.96
107176--107273	48	2.0	50	80	11	114	47	2	0	50	1.12
107242--107298	25	2.2	26	76	14	64	40	0	1	57	1.09
107400--107574	26	7.2	24	68	19	73	51	1	0	46	1.12
107401--107540	26	5.4	25	71	15	81	48	1	0	49	1.15
107492--107562	29	2.2	32	81	18	87	53	0	1	45	1.09
107748--107863	42	2.8	42	91	0	196	45	16	17	20	1.85
109838--109905	33	2.1	33	100	0	136	33	23	2	39	1.70

Tables:   1

The End!