Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001273.1 Hibiscus syriacus cultivar Beakdansim tig00002499_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84912

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15355--15385
13
2.3
14
94
5
55
61
0
0
38
0.96
15355--15396
13
3.1
14
83
6
52
57
0
0
42
0.99
31451--31489
18
2.2
18
85
0
51
35
10
2
51
1.50
31500--31821
38
8.8
36
75
15
234
42
3
6
46
1.48
31486--31821
37
9.1
36
74
17
221
42
4
7
46
1.50
31661--31685
11
2.3
11
100
0
50
40
8
8
44
1.63
31784--31829
24
1.9
24
82
8
58
34
0
8
56
1.30
34884--34928
19
2.4
19
92
3
74
11
13
8
66
1.44
38261--38879
81
7.6
81
77
5
618
30
24
20
24
1.99
38274--38945
164
4.1
164
91
0
952
30
24
20
24
1.99
38274--38956
329
2.1
327
86
1
938
30
24
20
24
1.99
39544--39855
38
8.8
36
72
16
199
42
3
6
47
1.47
39530--39869
37
9.5
36
70
18
194
42
3
7
46
1.49
39669--39693
12
2.1
12
100
0
50
40
8
8
44
1.63
39682--39728
23
2.0
24
91
8
78
42
4
6
46
1.48
39617--39804
101
1.9
101
81
8
231
40
4
6
47
1.51
39681--39741
27
2.4
23
81
13
68
40
4
6
47
1.51
39818--39863
24
1.9
24
82
8
58
34
0
8
56
1.30
41630--41659
3
10.0
3
100
0
60
33
0
0
66
0.92
42529--42613
25
3.3
25
77
9
98
27
1
2
69
1.08
42529--42633
28
3.8
27
75
14
83
28
1
1
67
1.12
42759--42808
24
2.0
24
85
11
66
52
2
2
44
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50187--50221
16
2.1
17
94
5
63
31
8
25
34
1.86
50971--51003
15
2.1
16
88
5
50
51
15
24
9
1.72
55972--56004
2
16.5
2
100
0
66
51
0
0
48
1.00
56615--56639
2
12.5
2
100
0
50
0
48
0
52
1.00
59882--59953
2
36.0
2
100
0
144
50
0
0
50
1.00
60260--60293
2
17.0
2
100
0
68
50
0
0
50
1.00
60445--60474
15
2.0
15
93
0
51
63
6
0
30
1.20
64719--64763
21
2.1
21
87
0
63
31
28
24
15
1.96
65116--65146
16
1.9
16
93
0
53
25
0
22
51
1.48
66430--66498
25
2.8
25
100
0
138
17
28
26
27
1.97
66613--66657
23
2.0
23
81
0
54
22
26
24
26
2.00
68643--68667
7
3.6
7
100
0
50
60
0
24
16
1.36
69795--69839
21
2.1
21
87
0
63
31
28
24
15
1.96
70192--70222
16
1.9
16
93
0
53
25
0
22
51
1.48
71497--71590
25
3.8
25
94
0
161
19
26
24
29
1.98
71705--71749
23
2.0
23
86
0
63
20
26
26
26
1.99
74299--74323
5
5.0
5
100
0
50
20
40
0
40
1.52
76139--76179
21
2.0
21
100
0
82
43
19
0
36
1.51
76572--76604
2
17.0
2
93
6
59
51
0
0
48
1.00
76572--76608
10
3.6
11
92
7
53
54
0
0
45
1.00
77107--77180
27
2.8
27
91
2
114
29
16
20
33
1.94
78108--78146
21
1.9
20
84
5
51
53
2
2
41
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79008--79032
12
2.1
12
100
0
50
24
8
0
68
1.16
79060--79118
24
2.5
22
76
17
64
62
0
0
37
0.95
79068--79125
30
2.0
29
90
10
91
65
0
0
34
0.93
82846--82882
14
2.6
15
87
8
51
59
2
0
37
1.12
83723--83760
20
1.9
20
94
0
67
36
26
18
18
1.94
83745--83814
19
3.6
19
94
3
113
35
22
12
28
1.91

Tables:   1

The End!