Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001275.1 Hibiscus syriacus cultivar Beakdansim tig00002503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67812

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5167--5215
21
2.3
21
100
0
98
30
26
12
30
1.92
5962--6031
18
4.2
17
71
14
56
54
8
0
37
1.31
6005--6061
18
3.4
17
77
18
57
59
3
0
36
1.14
6353--6384
16
2.0
16
100
0
64
37
18
18
25
1.94
6692--6725
12
2.8
12
90
0
50
0
2
32
64
1.08
9386--9471
3
28.7
3
100
0
172
33
0
0
66
0.92
11546--11570
7
3.6
7
100
0
50
68
0
0
32
0.90
11603--11653
18
2.9
17
72
18
50
25
0
1
72
0.95
20169--20519
174
2.0
174
96
3
654
31
17
18
31
1.95
23529--23912
83
4.6
83
94
0
678
26
13
22
38
1.90
24641--25163
116
4.6
113
90
3
764
36
11
20
31
1.89
31460--31551
46
1.9
50
84
8
129
30
20
10
38
1.87
32588--32640
18
3.0
18
81
10
65
54
5
0
39
1.24
33276--33320
15
2.9
15
90
3
63
0
6
26
66
1.16
33965--34021
18
2.9
19
82
12
80
49
10
12
28
1.73
36375--36415
21
2.0
21
90
0
64
19
24
24
31
1.98
37741--37794
3
18.0
3
100
0
108
66
0
0
33
0.92
37848--37880
17
1.9
17
88
11
50
42
6
0
51
1.26
38890--38932
20
2.2
20
91
0
68
30
13
25
30
1.94
48249--48280
2
16.0
2
100
0
64
50
0
0
50
1.00
49211--49265
3
18.3
3
88
0
83
60
1
1
36
1.18
49266--49293
3
9.3
3
100
0
56
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52749--52795
21
2.2
21
77
7
51
59
2
0
38
1.09
53458--53499
3
14.0
3
100
0
84
0
33
0
66
0.92
61984--62024
21
2.0
21
95
0
73
41
0
17
41
1.49

Tables:   1

The End!