Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001276.1 Hibiscus syriacus cultivar Beakdansim tig00002504_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73341

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2672--2700
2
14.5
2
100
0
58
51
0
0
48
1.00
3138--3215
21
3.7
21
98
0
147
23
20
29
26
1.99
5862--6014
45
3.3
47
82
10
183
30
20
18
30
1.96
5891--6014
47
2.7
45
90
5
178
29
20
17
32
1.96
18546--18591
20
2.3
20
96
0
83
36
4
17
41
1.69
19504--19531
2
14.0
2
100
0
56
50
0
0
50
1.00
20099--20130
2
16.0
2
100
0
64
50
0
0
50
1.00
21118--21181
29
2.2
29
83
8
78
14
10
17
57
1.64
23037--23110
37
2.0
37
84
7
96
36
5
13
44
1.67
31272--31344
15
4.9
15
77
9
87
43
6
17
31
1.75
31272--31344
30
2.5
30
93
2
121
43
6
17
31
1.75
31686--31757
28
2.5
30
80
15
96
52
1
0
45
1.09
31807--31849
22
2.0
22
86
9
61
55
0
0
44
0.99
31817--31883
23
3.0
22
85
10
75
52
0
0
47
1.00
31773--31920
52
2.9
52
76
10
135
49
0
2
47
1.15
32061--32211
42
3.6
42
88
0
212
53
17
11
17
1.72
32059--32212
84
1.8
84
90
0
245
53
16
12
17
1.73
33159--33219
30
2.0
30
84
12
81
47
8
8
36
1.63
33394--33447
23
2.4
22
79
14
56
57
7
0
35
1.27
43422--43479
29
2.0
29
100
0
116
37
13
17
31
1.89
47318--47342
13
1.9
13
100
0
50
36
0
0
64
0.94
47570--47623
22
2.5
22
85
11
76
53
3
1
40
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48982--49015
12
2.8
12
90
0
50
41
23
5
29
1.78
54432--54462
2
15.5
2
100
0
62
48
0
0
51
1.00
59896--59981
4
21.5
4
87
0
100
2
50
5
41
1.39
59896--59981
28
3.1
28
86
6
122
2
50
5
41
1.39
66070--66135
33
2.0
33
96
0
123
56
9
6
28
1.54
67153--67180
2
14.0
2
100
0
56
50
0
0
50
1.00
69417--69474
28
2.1
28
100
0
116
48
10
0
41
1.37

Tables:   1

The End!