genome.fa.s1278.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001278.1 Hibiscus syriacus cultivar Beakdansim tig00002508_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93985

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13059--13095	15	2.5	15	95	0	65	21	13	18	45	1.84
15727--15977	122	2.0	123	90	2	398	23	17	23	35	1.96
17702--17745	18	2.4	18	96	0	79	27	11	29	31	1.91
18722--18759	7	5.4	7	100	0	76	55	0	28	15	1.41
29726--29765	20	2.0	20	95	0	71	17	20	22	40	1.92
32200--32253	24	2.2	24	93	0	90	24	27	35	12	1.92
33768--33801	2	17.0	2	100	0	68	50	0	0	50	1.00
34479--34808	146	2.3	144	88	4	504	25	36	13	23	1.92
35152--35208	3	19.7	3	76	20	59	66	0	33	0	0.92
35132--35210	18	4.2	18	85	7	104	65	1	32	0	1.00
35904--35943	18	2.2	18	86	0	53	50	0	5	45	1.23
36908--36976	5	13.8	5	98	0	129	42	0	17	40	1.49
36989--37034	10	4.9	9	84	15	58	32	0	0	67	0.91
36988--37034	14	3.4	14	83	16	62	31	0	0	68	0.90
45591--45695	32	3.3	32	75	0	93	42	18	9	29	1.81
45646--45697	16	3.2	16	76	10	61	36	17	13	32	1.89
46143--46187	24	1.9	23	81	4	54	42	0	13	44	1.43
48122--48163	18	2.3	18	91	0	66	16	47	21	14	1.82
48140--48169	13	2.3	13	94	0	51	16	43	23	16	1.87
50611--50682	24	3.0	23	82	6	90	20	5	18	55	1.62
52657--52686	9	3.3	9	95	0	51	10	63	23	3	1.40
55276--55347	24	3.0	23	84	6	90	22	11	15	51	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57343--57396	18	3.3	18	73	24	64	16	50	18	14	1.79
57348--57383	13	2.8	13	100	0	72	16	50	16	16	1.79
57386--57419	15	2.1	16	89	10	52	14	35	26	23	1.94
59709--59780	24	3.0	23	78	13	74	23	11	13	51	1.73
61871--61918	10	5.6	8	85	14	53	16	33	25	25	1.96
61875--61908	15	2.1	16	89	10	52	14	35	26	23	1.94
64327--64422	24	4.0	24	81	5	88	22	12	15	48	1.79
66490--66521	13	2.4	14	85	15	50	21	37	21	18	1.94
68999--69070	24	3.0	23	84	6	90	22	11	15	51	1.74
70659--70750	12	7.8	12	71	20	59	18	14	18	48	1.80
70649--70752	47	2.2	48	83	10	133	20	13	17	49	1.80
70659--70754	24	4.0	24	82	8	108	19	13	17	48	1.80
73020--73058	17	2.2	18	86	13	55	69	0	7	23	1.14
73492--73541	24	2.1	24	100	0	100	54	16	22	8	1.68
74208--74708	54	9.3	54	85	1	605	32	18	15	33	1.92
74547--74629	27	3.1	26	60	13	60	37	13	16	32	1.88
81104--81655	54	10.3	54	86	4	368	30	19	15	34	1.93
81157--81655	108	4.6	108	88	2	704	30	19	16	34	1.93
81104--81655	162	3.4	162	86	2	720	30	19	15	34	1.93
87937--87966	4	7.5	4	100	0	60	76	0	0	23	0.78
88015--88075	21	2.9	21	69	26	56	65	1	11	21	1.33
88813--88850	20	2.0	20	89	5	60	63	7	2	26	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92156--92203	21	2.3	21	88	0	69	20	18	18	41	1.90
92166--92209	21	2.1	21	100	0	88	13	20	18	47	1.82
92170--92216	21	2.2	21	92	0	76	14	25	14	44	1.84

Tables:   1

The End!