Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001279.1 Hibiscus syriacus cultivar Beakdansim tig00002511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6984689
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 17 of 29
Found at i:3985451 original size:30 final size:29
Alignment explanation
Indices: 3985417--3985711 Score: 239
Period size: 30 Copynumber: 9.9 Consensus size: 29
3985407 TCTGGTTACT
* * *
3985417 TCTTCCCTTTTTATCAAAAACTGCGTGCTT
1 TCTTCCCTTTTCATCAAACACTG-GTGCTC
* *
3985447 TCTTCCATTTTCATCAAACATTGGGTGCTC
1 TCTTCCCTTTTCATCAAACACT-GGTGCTC
* *
3985477 TCTTCCTTTTTCATCAAACACTGGTTGATC
1 TCTTCCCTTTTCATCAAACACTGG-TGCTC
* *
3985507 TCTTCCATTTTCATCAAACACTGGTTACTC
1 TCTTCCCTTTTCATCAAACACTGG-TGCTC
* * **
3985537 TCTTCCCTTTTCATCAAATACTAGTTATTC
1 TCTTCCCTTTTCATCAAACACT-GGTGCTC
* * * *
3985567 TATTCCCTTTTCATGAAACACTGGTTGTTT
1 TCTTCCCTTTTCATCAAACACTGG-TGCTC
* *
3985597 TCTTCCCTTTTGATCAAACACTGCATGCTC
1 TCTTCCCTTTTCATCAAACACTG-GTGCTC
* * *
3985627 TCTTCCATTTTCATCAAACAATTGTTGCTC
1 TCTTCCCTTTTCATCAAAC-ACTGGTGCTC
* ** * *
3985657 TATTTTCTTTTCATCAAACATTGCGTACTC
1 TCTTCCCTTTTCATCAAACACTG-GTGCTC
* * *
3985687 TCTTTCCGTTTCATTAAACACTGGT
1 TCTTCCCTTTTCATCAAACACTGGT
3985712 TCTGCAAAAG
Statistics
Matches: 216, Mismatches: 42, Indels: 15
0.79 0.15 0.05
Matches are distributed among these distances:
29 9 0.04
30 202 0.94
31 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.43
Consensus pattern (29 bp):
TCTTCCCTTTTCATCAAACACTGGTGCTC
Found at i:3985493 original size:60 final size:60
Alignment explanation
Indices: 3985408--3985712 Score: 287
Period size: 60 Copynumber: 5.1 Consensus size: 60
3985398 TCAAAATTTT
* * * * *
3985408 CTGGTTACT-TCTTCCCTTTTTATCAAAAACTGCGTGCTTTCTTCCATTTTCATCAAACA
1 CTGGTTGCTCTCTTCCCTTTTCATCAAACACTGCGTGATCTCTTCCATTTTCATCAAACA
* * *
3985467 TTGGGTGCTCTCTTCCTTTTTCATCAAACACTG-GTTGATCTCTTCCATTTTCATCAAACA
1 CTGGTTGCTCTCTTCCCTTTTCATCAAACACTGCG-TGATCTCTTCCATTTTCATCAAACA
* * * * * * *
3985527 CTGGTTACTCTCTTCCCTTTTCATCAAATACT-AGTTATTCTATTCCCTTTTCATGAAACA
1 CTGGTTGCTCTCTTCCCTTTTCATCAAACACTGCGTGA-TCTCTTCCATTTTCATCAAACA
* * * * *
3985587 CTGGTTGTTTTCTTCCCTTTTGATCAAACACTGCATGCTCTCTTCCATTTTCATCAAACA
1 CTGGTTGCTCTCTTCCCTTTTCATCAAACACTGCGTGATCTCTTCCATTTTCATCAAACA
* * * ** * * *
3985647 ATTGTTGCTCTATTTTCTTTTCATCAAACATTGCGT-ACTCTCTTTCC-GTTTCATTAAACA
1 CTGGTTGCTCTCTTCCCTTTTCATCAAACACTGCGTGA-TCTC-TTCCATTTTCATCAAACA
3985707 CTGGTT
1 CTGGTT
3985713 CTGCAAAAGA
Statistics
Matches: 195, Mismatches: 44, Indels: 13
0.77 0.17 0.05
Matches are distributed among these distances:
59 9 0.05
60 181 0.93
61 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.10, T:0.43
Consensus pattern (60 bp):
CTGGTTGCTCTCTTCCCTTTTCATCAAACACTGCGTGATCTCTTCCATTTTCATCAAACA
Found at i:3985578 original size:90 final size:90
Alignment explanation
Indices: 3985417--3985676 Score: 268
Period size: 90 Copynumber: 2.9 Consensus size: 90
3985407 TCTGGTTACT
* * * * * * * * * * *
3985417 TCTTCCCTTTTTATCAAAAACTGCGTGCTTTCTTCCATTTTCATCAAACATTGGGTGCTCTCTTC
1 TCTTCCATTTTCATCAAACACTGCATACTCTCTTCCATTTTCATCAAACAATAGTTACTCTATTC
*
3985482 CTTTTTCATCAAACACTGGTTGATC
66 CCTTTTCATCAAACACTGGTTGATC
** * * * *
3985507 TCTTCCATTTTCATCAAACACTGGTTACTCTCTTCCCTTTTCATCAAATACTAGTTATTCTATTC
1 TCTTCCATTTTCATCAAACACTGCATACTCTCTTCCATTTTCATCAAACAATAGTTACTCTATTC
* * *
3985572 CCTTTTCATGAAACACTGGTTGTTT
66 CCTTTTCATCAAACACTGGTTGATC
* * * * * *
3985597 TCTTCCCTTTTGATCAAACACTGCATGCTCTCTTCCATTTTCATCAAACAATTGTTGCTCTATTT
1 TCTTCCATTTTCATCAAACACTGCATACTCTCTTCCATTTTCATCAAACAATAGTTACTCTATTC
*
3985662 TCTTTTCATCAAACA
66 CCTTTTCATCAAACA
3985677 TTGCGTACTC
Statistics
Matches: 137, Mismatches: 33, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
90 137 1.00
ACGTcount: A:0.22, C:0.27, G:0.08, T:0.43
Consensus pattern (90 bp):
TCTTCCATTTTCATCAAACACTGCATACTCTCTTCCATTTTCATCAAACAATAGTTACTCTATTC
CCTTTTCATCAAACACTGGTTGATC
Found at i:3985706 original size:90 final size:89
Alignment explanation
Indices: 3985408--3985709 Score: 263
Period size: 90 Copynumber: 3.4 Consensus size: 89
3985398 TCAAAATTTT
* * * * *
3985408 CTGGTTA-CTTCTTCCCTTTTTATCAAAAACTGCGTGCTTTCTTCCATTTTCATCAAAC-ATTGG
1 CTGGTTATC-TCTTTCCTTTTCATCAAACACTGCATGCTCTCTTCCATTTTCATCAAACAATT-G
* *
3985471 GTGCTCT-CTTCCTTTTTCATCAAACA
64 TTGCTCTATTTCC-TTTTCATCAAACA
** * * * * *
3985497 CTGGTTGATCTC-TTCCATTTTCATCAAACACTGGTTACTCTCTTCCCTTTTCATCAAATACTAG
1 CTGGTT-ATCTCTTTCC-TTTTCATCAAACACTGCATGCTCTCTTCCATTTTCATCAAACAATTG
** * *
3985561 TTATTCTATTCCCTTTTCATGAAACA
64 TTGCTCTATTTCCTTTTCATCAAACA
* * * *
3985587 CTGGTTGTTTTCTTCCCTTTTGATCAAACACTGCATGCTCTCTTCCATTTTCATCAAACAATTGT
1 CTGGTT-ATCTCTTTCCTTTTCATCAAACACTGCATGCTCTCTTCCATTTTCATCAAACAATTGT
*
3985652 TGCTCTATTTTCTTTTCATCAAACA
65 TGCTCTATTTCCTTTTCATCAAACA
* * *
3985677 TTGCG-TACTCTCTTTCCGTTTCATTAAACACTG
1 CTG-GTTA-TCTCTTTCCTTTTCATCAAACACTG
3985710 GTTCTGCAAA
Statistics
Matches: 165, Mismatches: 40, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
89 9 0.05
90 147 0.89
91 9 0.05
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.43
Consensus pattern (89 bp):
CTGGTTATCTCTTTCCTTTTCATCAAACACTGCATGCTCTCTTCCATTTTCATCAAACAATTGTT
GCTCTATTTCCTTTTCATCAAACA
Found at i:3986175 original size:30 final size:27
Alignment explanation
Indices: 3986111--3986175 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 27
3986101 ATAAATACTT
3986111 AAAATAATATTATTTTATATATTTAATA
1 AAAAT-ATATTATTTTATATATTTAATA
**
3986139 TTAATATATTATTTTAGTATCATTTTAATA
1 AAAATATATTATTTTA-TAT-A-TTTAATA
3986169 AAAATAT
1 AAAATAT
3986176 TAATTATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 11 0.37
28 6 0.20
29 1 0.03
30 12 0.40
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (27 bp):
AAAATATATTATTTTATATATTTAATA
Found at i:3986242 original size:21 final size:20
Alignment explanation
Indices: 3986193--3986244 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
3986183 AAAAATGTAT
3986193 TAATA-ATAATTTTAATTTA
1 TAATATATAATTTTAATTTA
* * *
3986212 TTATATTATATTTTTATTTTAA
1 TAATA-TATAATTTTAATTT-A
3986234 TAATATATAAT
1 TAATATATAAT
3986245 AAATTATTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
19 4 0.16
21 16 0.64
22 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TAATATATAATTTTAATTTA
Found at i:3986321 original size:30 final size:29
Alignment explanation
Indices: 3986287--3986390 Score: 102
Period size: 30 Copynumber: 3.5 Consensus size: 29
3986277 CTCGCTTTCT
*
3986287 TTTTCATCAAACACTAGGCGTTCTCTTCCA
1 TTTTCATCAAACA-TAGGCGTTCTCTTCCC
* * *
3986317 TTTTCATCAAATATTAGGTGTTCTCTCCCC
1 TTTTCATCAAACA-TAGGCGTTCTCTTCCC
* * *
3986347 TTTTTATTAAACAT-TGCATGTTCTCTTCCC
1 TTTTCATCAAACATAGGC--GTTCTCTTCCC
3986377 TTTTCATCAAACAT
1 TTTTCATCAAACAT
3986391 CGTTTGCTCT
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
28 1 0.02
29 1 0.02
30 57 0.97
ACGTcount: A:0.23, C:0.26, G:0.08, T:0.43
Consensus pattern (29 bp):
TTTTCATCAAACATAGGCGTTCTCTTCCC
Found at i:3986437 original size:30 final size:30
Alignment explanation
Indices: 3986401--3987512 Score: 384
Period size: 30 Copynumber: 37.2 Consensus size: 30
3986391 CGTTTGCTCT
3986401 AACATTGGTT-TCTCTCTTCACA-TTTCATCA
1 AACATTGGTTGT-TCTCTTC-CATTTTCATCA
*
3986431 AACATTGGTTGTTCTCTTCCATTTTCGTCA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
* **
3986461 AACATT--TTGTGCTCTATTACC-TTTTTGTCA
1 AACATTGGTTGT--TCTCTT-CCATTTTCATCA
* * * * * *
3986491 AATATT--ATGTGCTCTACCCTTTTCATAA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
* ** *
3986519 AACATTAGTTACTCTATTCCATTTTCATCA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
* * * * *
3986549 AACACTGGGTGCTCTCTTACTTTTTCATCA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
* * ** *
3986579 AACACTGATTGCGCTCTTCCTTTTTCATCA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
** * *
3986609 AACAGAGGTTGGTCTCTTCCCTTTTCATCA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
** * * *
3986639 AACACAGGTTGGTCTCTTCCCTTTTCATTA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
* * * *
3986669 AACACTAGTTGTTATCTTCCCA-TTGCATCA
1 AACATTGGTTGTTCTCTT-CCATTTTCATCA
* * *
3986699 AACACTGGTTGCTCTCTTTCC-TTTTAATCA
1 AACATTGGTTGTTCTC-TTCCATTTTCATCA
* * * * *
3986729 AACACTAGTTGCTCTATTCCTTTTTCATCA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
* * *
3986759 AACACTGGTTGCTT-TCTTTCATATTCATCA
1 AACATTGGTTG-TTCTCTTCCATTTTCATCA
* * *
3986789 AACATT-GTGTGCTCTCTTCTATTTTAATCA
1 AACATTGGT-TGTTCTCTTCCATTTTCATCA
* ** ** * * *
3986819 AACACTCATTAATATCTTTCATTTTCATTA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
* *
3986849 AACAATGGTTGTTCTC-TCCTCTTTTCATCA
1 AACATTGGTTGTTCTCTTCC-ATTTTCATCA
* * * * *
3986879 AATATT-G-AGTACACTTTCCTTTTTCAT-A
1 AACATTGGTTGTTCTC-TTCCATTTTCATCA
* * *** * * *
3986907 AAAATTTGTTACCCTCCTCCCTTTTTATCA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
* * *
3986937 AACATTGCG-TGCTCACTTCTC-TTTTTATCA
1 AACATTG-GTTGTTCTCTTC-CATTTTCATCA
* ** * *
3986967 AACATTGGTTATTAACTTCTC-TTTTTACCA
1 AACATTGGTTGTTCTCTTC-CATTTTCATCA
* ** * * *
3986997 AACACTAATTGCTCTCTTTTC-TTTTTATCA
1 AACATTGGTTGTTCTC-TTCCATTTTCATCA
* *
3987027 AACATTGGTTGTTCTCTTCCCTTTTCAACA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
* * *
3987057 AACAAT-GTATGCTCTCTTCCCTTTTCATCA
1 AACATTGGT-TGTTCTCTTCCATTTTCATCA
* ** *
3987087 AACATAGGTTACT-TCTTCTC-TTTTTATCA
1 AACATTGGTTGTTCTCTTC-CATTTTCATCA
* * * *
3987116 AACACTGCTTGTTTTCTTCCCTTTTCATCA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
** * * *
3987146 AACATTGGTTACTCTCTTCCCTTTTTATTA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
* * *
3987176 AACACTGGTTGCTCTCTTCCGTTTTC-TACA
1 AACATTGGTTGTTCTCTTCCATTTTCAT-CA
* ** * *
3987206 AACACTGGTTACTCTCTTTCATTTTCATTA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
* *
3987236 AACATTGGTTGCTCTCTTCC-TGTCTCATCA
1 AACATTGGTTGTTCTCTTCCAT-TTTCATCA
* * *
3987266 AACATT-ATGTGTTCTCGTCCGTTTTCATCA
1 AACATTGGT-TGTTCTCTTCCATTTTCATCA
* * * * * * *
3987296 AATACTGGTTATTCTCCTCCCTTTTAATGA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
*** * * *
3987326 AATGGTAGTTGCTCTCTTCC-CTTTCGATCA
1 AACATTGGTTGTTCTCTTCCATTTTC-ATCA
* * *
3987356 AACACTGCG-TGCTCTCTTTCCTTTTTCATCAA
1 AACATTG-GTTGTTCTC-TTCCATTTTCATC-A
* * * * *
3987388 AAAATT-GTTGCTCTATTTCTTTTTCATCA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
**
3987417 AACACTACG-TGTTCTCTTTCC-TTTTCATCA
1 AACA-TTGGTTGTTCTC-TTCCATTTTCATCA
*
3987447 AACGA-TGGTT-TCTCTATTTCCCA--TTCATCA
1 AAC-ATTGGTTGT-TCT-CTT-CCATTTTCATCA
* * * *
3987477 AACATTGGGTGCTCTTTTCCCTTTTCATCA
1 AACATTGGTTGTTCTCTTCCATTTTCATCA
*
3987507 TACATT
1 AACATT
3987513 TTTTTAATTT
Statistics
Matches: 824, Mismatches: 201, Indels: 114
0.72 0.18 0.10
Matches are distributed among these distances:
27 2 0.00
28 30 0.04
29 73 0.09
30 671 0.81
31 39 0.05
32 9 0.01
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.44
Consensus pattern (30 bp):
AACATTGGTTGTTCTCTTCCATTTTCATCA
Found at i:3986604 original size:60 final size:60
Alignment explanation
Indices: 3986401--3987512 Score: 598
Period size: 60 Copynumber: 18.6 Consensus size: 60
3986391 CGTTTGCTCT
* * * * * *
3986401 AACATTGGTTTCTCTCTTCAC-ATTTCATCAAACATTGGTTGTTCTCTTCCATTTTCGTCA
1 AACACTGGTTGCTCTCTTC-CTTTTTCATCAAACATTGGTTGCTCTCTTCCTTTTTCATCA
** * * * * *
3986461 AACA-TTTTGTGCTCTATTACCTTTTT-GTCAAATATT-ATGTGCTCTAC--CC-TTTTCATAA
1 AACACTGGT-TGCTCTCTT-CCTTTTTCATCAAACATTGGT-TGCTCT-CTTCCTTTTTCATCA
* * * * * * * *
3986519 AACATTAGTTACTCTATTCCATTTTCATCAAACACTGGGTGCTCTCTTACTTTTTCATCA
1 AACACTGGTTGCTCTCTTCCTTTTTCATCAAACATTGGTTGCTCTCTTCCTTTTTCATCA
* * ** * *
3986579 AACACTGATTGCGCTCTTCCTTTTTCATCAAACAGAGGTTGGTCTCTTCCCTTTTCATCA
1 AACACTGGTTGCTCTCTTCCTTTTTCATCAAACATTGGTTGCTCTCTTCCTTTTTCATCA
* * * * * * * * ** *
3986639 AACACAGGTTGGTCTCTTCCCTTTTCATTAAACACTAGTTGTTATCTTCCCATTGCATCA
1 AACACTGGTTGCTCTCTTCCTTTTTCATCAAACATTGGTTGCTCTCTTCCTTTTTCATCA
* * * *
3986699 AACACTGGTTGCTCTCTTTCC-TTTTAATCAAACACTAGTTGCTCTATTCCTTTTTCATCA
1 AACACTGGTTGCTCTC-TTCCTTTTTCATCAAACATTGGTTGCTCTCTTCCTTTTTCATCA
* * * * *
3986759 AACACTGGTTGCTTTCTTTCATATTCATCAAACATT-GTGTGCTCTCTT-CTATTTTAATCA
1 AACACTGGTTGCTCTCTTCCTTTTTCATCAAACATTGGT-TGCTCTCTTCCT-TTTTCATCA
** ** * * * * * *
3986819 AACACTCATTAATATCTTTCATTTTCATTAAACAATGGTTGTTCTC-TCCTCTTTTCATCA
1 AACACTGGTTGCTCTCTTCCTTTTTCATCAAACATTGGTTGCTCTCTTCCT-TTTTCATCA
* * * * * * * * *
3986879 AATATTGAG-TACACT-TTCCTTTTTCAT-AAAAATTTGTTACCCTCCTCCCTTTTT-ATCA
1 AACACTG-GTTGCTCTCTTCCTTTTTCATCAAACATTGGTTGCTCT-CTTCCTTTTTCATCA
* * ** ** *
3986937 AACATTGCG-TGCTCACTTCTCTTTTT-ATCAAACATTGGTTATTAACTTCTCTTTTT-ACCA
1 AACACTG-GTTGCTCTCTTC-CTTTTTCATCAAACATTGGTTGCTCTCTTC-CTTTTTCATCA
** * * * *
3986997 AACACTAATTGCTCTCTTTTCTTTTT-ATCAAACATTGGTTGTTCTCTTCCCTTTTCAACA
1 AACACTGGTTGCTCTC-TTCCTTTTTCATCAAACATTGGTTGCTCTCTTCCTTTTTCATCA
* * * *
3987057 AACAAT-GTATGCTCTCTTCCCTTTTCATCAAACATAGGTTACT-TCTTCTCTTTTT-ATCA
1 AACACTGGT-TGCTCTCTTCCTTTTTCATCAAACATTGGTTGCTCTCTTC-CTTTTTCATCA
* * * * * *
3987116 AACACTGCTTGTTTTCTTCCCTTTTCATCAAACATTGGTTACTCTCTTCCCTTTTT-ATTA
1 AACACTGGTTGCTCTCTTCCTTTTTCATCAAACATTGGTTGCTCTCTT-CCTTTTTCATCA
* * * * * *
3987176 AACACTGGTTGCTCTCTTCCGTTTTC-TACAAACACTGGTTACTCTCTTTCATTTTCATTA
1 AACACTGGTTGCTCTCTTCCTTTTTCAT-CAAACATTGGTTGCTCTCTTCCTTTTTCATCA
* * * * * * *
3987236 AACATTGGTTGCTCTCTTCCTGTCTCATCAAACATT-ATGTGTTCTCGTCCGTTTTCATCA
1 AACACTGGTTGCTCTCTTCCTTTTTCATCAAACATTGGT-TGCTCTCTTCCTTTTTCATCA
* ** * * * * *** * *
3987296 AATACTGGTTATTCTCCTCCCTTTTAATGAAATGGTAGTTGCTCTCTTCC-CTTTCGATCA
1 AACACTGGTTGCTCTCTTCCTTTTTCATCAAACATTGGTTGCTCTCTTCCTTTTTC-ATCA
* * *
3987356 AACACTGCG-TGCTCTCTTTCCTTTTTCATCAAAAAATT-GTTGCTCTATTTCTTTTTCATCA
1 AACACTG-GTTGCTCTC-TTCCTTTTTCATC-AAACATTGGTTGCTCTCTTCCTTTTTCATCA
* * **
3987417 AACACTACGTGTT-CTCT-TTCC-TTTTCATCAAACGA-TGGTTTCTCTATTTCC-CATTCATCA
1 AACACT--G-GTTGCTCTCTTCCTTTTTCATCAAAC-ATTGGTTGCTCT-CTTCCTTTTTCATCA
* * * * *
3987477 AACATTGGGTGCTCTTTTCCCTTTTCATCATACATT
1 AACACTGGTTGCTCTCTTCCTTTTTCATCAAACATT
3987513 TTTTTAATTT
Statistics
Matches: 810, Mismatches: 189, Indels: 106
0.73 0.17 0.10
Matches are distributed among these distances:
57 9 0.01
58 61 0.08
59 116 0.14
60 555 0.69
61 54 0.07
62 8 0.01
63 6 0.01
64 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.44
Consensus pattern (60 bp):
AACACTGGTTGCTCTCTTCCTTTTTCATCAAACATTGGTTGCTCTCTTCCTTTTTCATCA
Found at i:3986788 original size:90 final size:90
Alignment explanation
Indices: 3986510--3987449 Score: 500
Period size: 90 Copynumber: 10.5 Consensus size: 90
3986500 TGCTCTACCC
* * * * * * *
3986510 TTTTCATAAAACATTAGTTACTCT-ATTCCATTTTCATCAAACACTGGGTGCTCTCTTACTTTTT
1 TTTTCATCAAACATTGGTTGCTCTCTTTCC-TTTTCATCAAACACTAGTTGCTCTCTTCCTTTTT
* ** *
3986574 CATCAAACACTGATTGCGCTCTTCCT
65 CATCAAACACTGGTTGCTTTCTTCCA
** * * * *
3986600 TTTTCATCAAACAGAGGTTGGTCTCTTCCCTTTTCATCAAACAC-AGGTTGGTCTCTTCCCTTTT
1 TTTTCATCAAACATTGGTTGCTCTCTTTCCTTTTCATCAAACACTA-GTTGCTCTCTTCCTTTTT
* *
3986664 CATTAAACACTAGTTG-TTATCTTCCCA
65 CATCAAACACTGGTTGCTT-TCTT-CCA
* * * *
3986691 -TTGCATCAAACACTGGTTGCTCTCTTTCCTTTTAATCAAACACTAGTTGCTCTATTCCTTTTTC
1 TTTTCATCAAACATTGGTTGCTCTCTTTCCTTTTCATCAAACACTAGTTGCTCTCTTCCTTTTTC
*
3986755 ATCAAACACTGGTTGCTTTCTTTCA
66 ATCAAACACTGGTTGCTTTCTTCCA
* * * ** * * *
3986780 TATTCATCAAACATT-GTGTGCTCTC-TTCTATTTTAATCAAACACTCA-TTAATATCTTTCATT
1 TTTTCATCAAACATTGGT-TGCTCTCTTTC-CTTTTCATCAAACACT-AGTTGCTCTCTTCCTTT
* * *
3986842 TTCATTAAACAATGGTTG--TTCTCTCCTC
63 TTCATCAAACACTGGTTGCTTTCT-TCC-A
* * * * * * * * *
3986870 TTTTCATCAAATATTGAG-T--ACACTTTCCTTTTTCAT-AAAAATTTGTTACCCTCCTCCCTTT
1 TTTTCATCAAACATTG-GTTGCTCTCTTTCC-TTTTCATCAAACACTAGTTGCTCT-CTTCCTTT
* **
3986931 TT-ATCAAACATTGCG-TGCTCACTTCTC-
63 TTCATCAAACACTG-GTTGCTTTCTTC-CA
* ** ** * * * *
3986958 TTTTTATCAAACATTGGTTATTAAC-TTCTCTTTTTACCAAACACTAATTGCTCTCTTTTCTTTT
1 TTTTCATCAAACATTGGTTGCTCTCTTTC-CTTTTCATCAAACACTAGTTGCTCTC-TTCCTTTT
* *
3987022 T-ATCAAACATTGGTTG-TTCTCTTCCC
64 TCATCAAACACTGGTTGCTT-TCTTCCA
* * * *
3987048 TTTTCAACAAACAAT-GTATGCTCTCTTCCCTTTTCATCAAACA-TAGGTTACT-TCTTCTCTTT
1 TTTTCATCAAACATTGGT-TGCTCTCTTTCCTTTTCATCAAACACTA-GTTGCTCTCTTC-CTTT
* * *
3987110 TT-ATCAAACACTGCTTGTTTTCTTCCC
63 TTCATCAAACACTGGTTGCTTTCTTCCA
* * * * * *
3987137 TTTTCATCAAACATTGGTTACTCTCTTCCCTTTTTATTAAACACTGGTTGCTCTCTTCCGTTTTC
1 TTTTCATCAAACATTGGTTGCTCTCTTTCCTTTTCATCAAACACTAGTTGCTCTCTTCCTTTTTC
* * *
3987202 -TACAAACACTGGTTACTCTCTTTCA
66 AT-CAAACACTGGTTGCTTTCTTCCA
* * * * * *
3987227 TTTTCATTAAACATTGGTTGCTCTC-TTCCTGTCTCATCAAACATTA-TGTGTTCTCGTCCGTTT
1 TTTTCATCAAACATTGGTTGCTCTCTTTCCT-TTTCATCAAACACTAGT-TGCTCTCTTCCTTTT
* * * *
3987290 TCATCAAATACTGGTT-ATTCTCCTCCC
64 TCATCAAACACTGGTTGCTT-TCTTCCA
* * *** * * *
3987317 TTTTAATGAAATGGTAGTTGCTCTC-TTCCCTTTCGATCAAACACT-GCGTGCTCTCTTTCCTTT
1 TTTTCATCAAACATTGGTTGCTCTCTTTCCTTTTC-ATCAAACACTAG-TTGCTCTC-TTCCTTT
* * * * * * *
3987380 TTCATCAAAAAATTGTTGCTCTATTTCT
63 TTCATCAAACACTGGTTGCTTTCTTCCA
** *
3987408 TTTTCATCAAACACTACG-TGTTCTCTTTCCTTTTCATCAAAC
1 TTTTCATCAAACA-TTGGTTGCTCTCTTTCCTTTTCATCAAAC
3987450 GATGGTTTCT
Statistics
Matches: 642, Mismatches: 156, Indels: 103
0.71 0.17 0.11
Matches are distributed among these distances:
87 1 0.00
88 43 0.07
89 127 0.20
90 404 0.63
91 56 0.09
92 11 0.02
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.44
Consensus pattern (90 bp):
TTTTCATCAAACATTGGTTGCTCTCTTTCCTTTTCATCAAACACTAGTTGCTCTCTTCCTTTTTC
ATCAAACACTGGTTGCTTTCTTCCA
Found at i:3988759 original size:30 final size:29
Alignment explanation
Indices: 3988725--3989039 Score: 226
Period size: 30 Copynumber: 10.5 Consensus size: 29
3988715 TTTTCTATTT
*
3988725 ATCAAACACTGCG-TGCTTTCTTCCGTTTTC
1 ATCAAACACTG-GTTGCTCTCTTCC-TTTTC
3988755 ATCAAACTA-TGGTTGCAATCT-TTCCTTTTC
1 ATCAAAC-ACTGGTTGC--TCTCTTCCTTTTC
*
3988785 ATCAAACATTGAG-TGCTCTCTTCCTTTTTC
1 ATCAAACACTG-GTTGCTCTCTTCC-TTTTC
*
3988815 ATCAAACACTGGTTGATCTCTTCCATTTTC
1 ATCAAACACTGGTTGCTCTCTTCC-TTTTC
*
3988845 ATCAAACACTGGTTACTCTCTTCCCTTTTC
1 ATCAAACACTGGTTGCTCTCTT-CCTTTTC
* ** ** *
3988875 ATCAAATACTAATTATTCTATTCTCTTTTC
1 ATCAAACACTGGTTGCTCTCTTC-CTTTTC
* * * *
3988905 ATGAAACACTGGTTGTTTTCTTCCCTTTTG
1 ATCAAACACTGGTTGCTCTCTT-CCTTTTC
* *
3988935 TTCAAACACTGCG-TGCTCTCTTCCATTCTC
1 ATCAAACACTG-GTTGCTCTCTTCC-TTTTC
* * * *
3988965 ATCAAACAATGGTTGCTCTATTTTCTTTTT
1 ATCAAACACTGGTTGCTCT-CTTCCTTTTC
* ** *
3988995 ATCAAACAAATGCATGCTCTCTTTCATTTTC
1 ATCAAAC-ACTGGTTGCTCTC-TTCCTTTTC
*
3989026 ATTAAACACTGGTT
1 ATCAAACACTGGTT
3989040 CTGCAAAAGA
Statistics
Matches: 226, Mismatches: 41, Indels: 36
0.75 0.14 0.12
Matches are distributed among these distances:
28 3 0.01
29 11 0.05
30 175 0.77
31 35 0.15
32 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.10, T:0.43
Consensus pattern (29 bp):
ATCAAACACTGGTTGCTCTCTTCCTTTTC
Found at i:3988878 original size:90 final size:89
Alignment explanation
Indices: 3988717--3989039 Score: 262
Period size: 90 Copynumber: 3.6 Consensus size: 89
3988707 GTTACTTCTT
* * * ** *
3988717 TTCTATTT-ATCAAACACTGCG-TGCTTTCTTCCGTTTTCATCAAACTA-TGGTTGCAATCTTTC
1 TTCTTTTTCATCAAACACTG-GTTGCTCTCTTCCATTTTCATCAAAC-ACTGGTTGCTCTCTTCC
* *
3988779 CTTTTCATCAAACATTGAGTGCTCTC
64 CTTTTCATCAAACAATGAGTGCTCTA
* *
3988805 TTCCTTTTTCATCAAACACTGGTTGATCTCTTCCATTTTCATCAAACACTGGTTACTCTCTTCCC
1 TT-CTTTTTCATCAAACACTGGTTGCTCTCTTCCATTTTCATCAAACACTGGTTGCTCTCTTCCC
* * * * **
3988870 TTTTCATCAAATACTAATTATTCTA
65 TTTTCATCAAACAATGAGTGCTCTA
* * * * **
3988895 TTCTCTTTTCATGAAACACTGGTTGTTTTCTTCCCTTTTGTTCAAACACTGCG-TGCTCTCTTCC
1 TTCT-TTTTCATCAAACACTGGTTGCTCTCTTCCATTTTCATCAAACACTG-GTTGCTCTCTTCC
* *
3988959 ATTCTCATCAAACAATG-GTTGCTCTA
64 CTTTTCATCAAACAATGAG-TGCTCTA
* ** * *
3988985 TTTTCTTTTT-ATCAAACAAATGCATGCTCTCTTTCATTTTCATTAAACACTGGTT
1 --TTCTTTTTCATCAAAC-ACTGGTTGCTCTCTTCCATTTTCATCAAACACTGGTT
3989040 CTGCAAAAGA
Statistics
Matches: 183, Mismatches: 41, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
88 2 0.01
89 9 0.05
90 138 0.75
91 30 0.16
92 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.43
Consensus pattern (89 bp):
TTCTTTTTCATCAAACACTGGTTGCTCTCTTCCATTTTCATCAAACACTGGTTGCTCTCTTCCCT
TTTCATCAAACAATGAGTGCTCTA
Found at i:3989033 original size:31 final size:31
Alignment explanation
Indices: 3988948--3989033 Score: 86
Period size: 31 Copynumber: 2.8 Consensus size: 31
3988938 AAACACTGCG
* * **
3988948 TGCTCTCTTCCATTCTCATCAAAC-AATGGT
1 TGCTCTCTTTCATTTTCATCAAACAAATGCA
* *
3988978 TGCTCTATTTTC-TTTTTATCAAACAAATGCA
1 TGCTCT-CTTTCATTTTCATCAAACAAATGCA
*
3989009 TGCTCTCTTTCATTTTCATTAAACA
1 TGCTCTCTTTCATTTTCATCAAACA
3989034 CTGGTTCTGC
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
30 20 0.45
31 24 0.55
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.43
Consensus pattern (31 bp):
TGCTCTCTTTCATTTTCATCAAACAAATGCA
Found at i:3989565 original size:21 final size:20
Alignment explanation
Indices: 3989516--3989567 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
3989506 AAAAATGTAT
3989516 TAATA-ATAATTTTAATTTA
1 TAATATATAATTTTAATTTA
* * *
3989535 TTATATTATATTTTTATTTTAA
1 TAATA-TATAATTTTAATTT-A
3989557 TAATATATAAT
1 TAATATATAAT
3989568 AAATTATTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
19 4 0.16
21 16 0.64
22 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TAATATATAATTTTAATTTA
Found at i:3989621 original size:30 final size:30
Alignment explanation
Indices: 3989585--3989684 Score: 103
Period size: 30 Copynumber: 3.3 Consensus size: 30
3989575 TAATAATATT
* * *
3989585 ATCAAACATTTGGTGCTCGT-TTTCTTTTTC
1 ATCAAACATTAGGTGCTC-TATTCCATTTTC
3989615 ATCAAACATTAGGTGCTCTATTCCATTTTC
1 ATCAAACATTAGGTGCTCTATTCCATTTTC
* * * * *
3989645 ATCAAATATTAGGCGTTCTCTCCCATTTTC
1 ATCAAACATTAGGTGCTCTATTCCATTTTC
*
3989675 ATTAAACATT
1 ATCAAACATT
3989685 GCATGTTCTC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
29 1 0.02
30 58 0.98
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.43
Consensus pattern (30 bp):
ATCAAACATTAGGTGCTCTATTCCATTTTC
Found at i:3989836 original size:28 final size:28
Alignment explanation
Indices: 3989762--3989837 Score: 68
Period size: 28 Copynumber: 2.6 Consensus size: 28
3989752 CAAACACTGG
* *
3989762 TTGTTCTCTTCCATTTTCGTCAAACAAT
1 TTGTGCTCTACCATTTTCGTCAAACAAT
3989790 TTGTGCTCTATTACC-TTTTCG-CAAA-ATAT
1 TTGTGCTC---TACCATTTTCGTCAAACA-AT
3989819 TGTGTGCTCTACCATTTTC
1 T-TGTGCTCTACCATTTTC
3989838 ATAAAACATT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
27 4 0.10
28 13 0.32
29 7 0.17
30 13 0.32
31 3 0.08
ACGTcount: A:0.20, C:0.24, G:0.11, T:0.46
Consensus pattern (28 bp):
TTGTGCTCTACCATTTTCGTCAAACAAT
Found at i:3989869 original size:30 final size:30
Alignment explanation
Indices: 3989833--3990974 Score: 266
Period size: 30 Copynumber: 38.5 Consensus size: 30
3989823 TGCTCTACCA
* * *
3989833 TTTTCATAAAACATTGGGTGTTGTCTTTCT
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * * *
3989863 TTTTCATCAAACATTAGTTACTCTATTTCA
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* *
3989893 TTTTCATCAAACACTGGGTGCTCTCTTACT
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* *
3989923 TTTTCATCAAACATTGATCGTGCTCT-TCT-T
1 TTTTCATCAAACATTG--GGTGCTCTCTTTCT
** * *
3989953 TTTTCATCAAACACAGGTTGGTCTC-TTCT
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * * * * *
3989982 CTTTTCATCAAACACTAGTTGTTATCTTCCC
1 -TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * * *
3990013 ATTGCATCAAACACTGGTTGCTCTCTTTCC
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * * *
3990043 TTTTAATCAAACACTGGTTGCTCTATTCCT
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * *
3990073 TTTTCATCAAACACTGGTTGCTTTCTTTCA
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* *
3990103 TATTCATCAAACATTGTGTGCTCTC-TTCT
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * *** ** * * *
3990132 ATTTTAATCAAACACTCATTAATATCTTCCA
1 -TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * *
3990163 TTTTCATCAAACAATGGTTGTTCTC-TTCT
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* *
3990192 CTTTTCATCAAATATTGTGTG--CTCTTTCAT
1 -TTTTCATCAAACATTGGGTGCTCTCTTTC-T
* ** ** *
3990222 TTTTAATCAAACACCGATTGCTCT-TTTCCC
1 TTTTCATCAAACATTGGGTGCTCTCTTT-CT
* * * * * **
3990252 TTTTCAT-AAAAATTTGTTACCCTCCTCCCT
1 TTTTCATCAAACATTGGGTGCTCT-CTTTCT
* * * *
3990282 TTTT-ATCAAACAATGCGT-CTCACTTCCT
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * ** **
3990310 TTTTTATCAAACATTGGTTATTAAC-TTCT
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* *
3990339 CTTTTCATCAAACATTGTGTGCTCTCCTTCT
1 -TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * *
3990370 TTTT-ATCAAACATTGGTTGTTCTCTTCCC
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * ** * * *
3990399 TTTTCAACAAACAATGTATGCTCTATTCCC
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * * * *
3990429 TTTTCATCAAACATT-GAT-ATTTGTTCCC
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * * *
3990457 TGTTAATCAAATACT-GATAGCTCT-TTTCT
1 TTTTCATCAAACATTGGGT-GCTCTCTTTCT
* * *
3990486 CTTTTCATCAAACATTGGTTACT-TCTTCCCT
1 -TTTTCATCAAACATTGGGTGCTCTCTT-TCT
* * *
3990517 TTTT-ATCAAACA----CTG--C-ATGTC-
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* ** *
3990538 TTTTCATCAAAC-TATGGTTGCAGT-TTTCC
1 TTTTCATCAAACAT-TGGGTGCTCTCTTTCT
* * * * *
3990567 TTTTCATCAATCATTGGGTGCTATATTCCA
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * *
3990597 ATTTCATCAAACATTGGTTACTCTCTTCCCT
1 TTTTCATCAAACATTGGGTGCTCTCTT-TCT
* * * * *
3990628 TTTT-ATTAAACACTGGTTGCTCTCTTCCG
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * *
3990657 TTTTC-TACAAACACTGGTTTCTCTCTTTTTTT
1 TTTTCAT-CAAACATTGGGTGCTCTC--TTTCT
* * * *
3990689 TTTTCATTAAACAGTGGTTGCTCTCTTCCT
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* ** * * * *
3990719 TTCTCATCAAACATTATGTGTTCTCGTCCG
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * ** * * *
3990749 TTTTCATCAAATACTGGTTATTCTCCTCCC
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * *** * * * *
3990779 TTTTAATGAAATGGTAGTTGTTCTC-TTCC
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * *
3990808 CTTTCGATCAAACACTGCGTGCTCTCTTTCCT
1 TTTTC-ATCAAACATTGGGTGCTCTCTTT-CT
* * *
3990840 TTTTCATCAAAAAATT-GTTGCTCTATTTCT
1 TTTTCATC-AAACATTGGGTGCTCTCTTTCT
* ** * *
3990870 TTTTCATCAAACACTACGTGTTCTCTTTCC
1 TTTTCATCAAACATTGGGTGCTCTCTTTCT
* * * *
3990900 TTTTCATCAAACGA-TGGTTTCTCTATTTCC
1 TTTTCATCAAAC-ATTGGGTGCTCTCTTTCT
* *
3990930 TATTCATCAAACATTGGGTGCTCTCTTCCCT
1 TTTTCATCAAACATTGGGTGCTCTCTT-TCT
*
3990961 TTTT-ATCATACATT
1 TTTTCATCAAACATT
3990975 TTTTAATTTA
Statistics
Matches: 808, Mismatches: 249, Indels: 110
0.69 0.21 0.09
Matches are distributed among these distances:
21 4 0.00
22 8 0.01
23 1 0.00
25 1 0.00
26 2 0.00
28 42 0.05
29 124 0.15
30 545 0.67
31 41 0.05
32 39 0.05
33 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.44
Consensus pattern (30 bp):
TTTTCATCAAACATTGGGTGCTCTCTTTCT
Found at i:3990343 original size:29 final size:28
Alignment explanation
Indices: 3990280--3990387 Score: 87
Period size: 29 Copynumber: 3.7 Consensus size: 28
3990270 ACCCTCCTCC
* *
3990280 CTTTTTATCAAACAATGCG-TCTC-ACTT
1 CTTTTTATCAAACATTG-GTTATCTACTT
3990307 CCTTTTTTATCAAACATTGGTTAT-TAACTT
1 -C-TTTTTATCAAACATTGGTTATCT-ACTT
** *
3990337 CTCTTTTCATCAAACATTGTGTGCTCTCCTT
1 CT-TTTT-ATCAAACATTG-GTTATCTACTT
3990368 CTTTTTATCAAACATTGGTT
1 CTTTTTATCAAACATTGGTT
3990388 GTTCTCTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
28 5 0.08
29 33 0.50
30 19 0.29
31 8 0.12
32 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.08, T:0.46
Consensus pattern (28 bp):
CTTTTTATCAAACATTGGTTATCTACTT
Found at i:3990343 original size:59 final size:59
Alignment explanation
Indices: 3990277--3990528 Score: 171
Period size: 59 Copynumber: 4.3 Consensus size: 59
3990267 GTTACCCTCC
*
3990277 TCCCTTTTTATCAAACAATGCGT-CTC-ACTTCCTTTTTTATCAAACATTGGTTATTAACT
1 TCCCTTTTCATCAAACAATGCGTGCTCTACTT-C-TTTTTATCAAACATTGGTTATTAACT
* * * * * **
3990336 TCTCTTTTCATCAAACATTGTGTGCTCTCCTTCTTTTTATCAAACATTGGTTGTTCTCT
1 TCCCTTTTCATCAAACAATGCGTGCTCTACTTCTTTTTATCAAACATTGGTTATTAACT
* ** * * **
3990395 TCCCTTTTCAACAAACAATGTATGCTCTA-TTCCCTTTTCATCAAACATT-GATATT-TGT
1 TCCCTTTTCATCAAACAATGCGTGCTCTACTT--CTTTTTATCAAACATTGGTTATTAACT
* * * * * *
3990453 TCCCTGTTAATCAAATACTG-ATAGCTCT-TTTCTCTTTTCATCAAACATTGGTTACTT--CT
1 TCCCTTTTCATCAAACAATGCGT-GCTCTACTTCT-TTTT-ATCAAACATTGGTTA-TTAACT
*
3990512 TCCCTTTTTATCAAACA
1 TCCCTTTTCATCAAACA
3990529 CTGCATGTCT
Statistics
Matches: 155, Mismatches: 28, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
56 2 0.01
57 5 0.03
58 36 0.23
59 88 0.57
60 21 0.14
61 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.44
Consensus pattern (59 bp):
TCCCTTTTCATCAAACAATGCGTGCTCTACTTCTTTTTATCAAACATTGGTTATTAACT
Found at i:3990730 original size:62 final size:60
Alignment explanation
Indices: 3990598--3990731 Score: 164
Period size: 62 Copynumber: 2.2 Consensus size: 60
3990588 TATATTCCAA
*
3990598 TTTCATCAAACATTGGTTACTCTCTTCCCTTTTTATTAAACACTGGTTGCTCTCTTCCGT
1 TTTCATCAAACACTGGTTACTCTCTTCCCTTTTTATTAAACACTGGTTGCTCTCTTCCGT
* *** *
3990658 TTTC-TACAAACACTGGTTTCTCTCTTTTTTTTTTTCATTAAACAGTGGTTGCTCTCTTCC-T
1 TTTCAT-CAAACACTGGTTACTCTC-TTCCCTTTTT-ATTAAACACTGGTTGCTCTCTTCCGT
3990719 TTCTCATCAAACA
1 TT-TCATCAAACA
3990732 TTATGTGTTC
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
59 1 0.02
60 20 0.32
61 10 0.16
62 31 0.49
63 1 0.02
ACGTcount: A:0.19, C:0.25, G:0.09, T:0.46
Consensus pattern (60 bp):
TTTCATCAAACACTGGTTACTCTCTTCCCTTTTTATTAAACACTGGTTGCTCTCTTCCGT
Found at i:3992213 original size:30 final size:30
Alignment explanation
Indices: 3992174--3992492 Score: 270
Period size: 30 Copynumber: 10.6 Consensus size: 30
3992164 ACTTCTTTTC
* * *
3992174 TTTTTATCAAACACT-GTGTGCTTTCTTCCG
1 TTTTCATCAAACACTGGT-TGCTCTCTTCCA
** *
3992204 TTTTCATCAAACTA-TGGTTGCAATCTTTCA
1 TTTTCATCAAAC-ACTGGTTGCTCTCTTCCA
* *
3992234 TTTTCATCAAACATTGAG-TGCTCTCTTCCT
1 TTTTCATCAAACACTG-GTTGCTCTCTTCCA
*
3992264 TTTTCATCAAACACTGGTTGATCTCTTCCA
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
* *
3992294 TTTTCATCAAACACTGGTTACTCTCTTCCC
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
* * ** *
3992324 TTTTCATCAAATACTAGTTATTCTATTCCA
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
* * * *
3992354 TTTTCATGAAACACTGGTTGTTTTCTTCCC
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
* *
3992384 TTTTGATCAAACACTGCG-TGCTCTCTTCCC
1 TTTTCATCAAACACTG-GTTGCTCTCTTCCA
* * * *
3992414 TTCTCATCAAACAATGGTTGCTCTATTTTC-
1 TTTTCATCAAACACTGGTTGCTCT-CTTCCA
* * ** *
3992444 TTTTTATCAAACAATGCATGCTCTCTTTCA
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
*
3992474 TTTTCATTAAACACTGGTT
1 TTTTCATCAAACACTGGTT
3992493 CTGCAAAAGA
Statistics
Matches: 234, Mismatches: 46, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
29 7 0.03
30 219 0.94
31 8 0.03
ACGTcount: A:0.22, C:0.25, G:0.10, T:0.43
Consensus pattern (30 bp):
TTTTCATCAAACACTGGTTGCTCTCTTCCA
Found at i:3992332 original size:90 final size:90
Alignment explanation
Indices: 3992173--3992492 Score: 301
Period size: 90 Copynumber: 3.6 Consensus size: 90
3992163 TACTTCTTTT
* * ** * *
3992173 CTTTTTATCAAACACT-GTGTGCTTTCTTCCGTTTTCATCAAACTA-TGGTTGCAATCTTTCATT
1 CTTTTTATCAAACACTGGT-TGCTCTCTTCCATTTTCATCAAAC-ACTGGTTGCTCTCTTCCCTT
* *
3992236 TTCATCAAACATTGAG-TGCTCTCTTC
64 TTCATCAAACAATGAGTTGCTCTATTC
* *
3992262 CTTTTTCATCAAACACTGGTTGATCTCTTCCATTTTCATCAAACACTGGTTACTCTCTTCCCTTT
1 CTTTTT-ATCAAACACTGGTTGCTCTCTTCCATTTTCATCAAACACTGGTTGCTCTCTTCCCTTT
* * **
3992327 TCATCAAATACT-AGTTATTCTATTC
65 TCATCAAACAATGAGTTGCTCTATTC
* * * * * *
3992352 CATTTTCATGAAACACTGGTTGTTTTCTTCCCTTTTGATCAAACACTGCG-TGCTCTCTTCCCTT
1 C-TTTTTATCAAACACTGGTTGCTCTCTTCCATTTTCATCAAACACTG-GTTGCTCTCTTCCCTT
* *
3992416 CTCATCAAACAATG-GTTGCTCTATTTT
64 TTCATCAAACAATGAGTTGCTCTA-TTC
* ** * *
3992443 CTTTTTATCAAACAATGCATGCTCTCTTTCATTTTCATTAAACACTGGTT
1 CTTTTTATCAAACACTGGTTGCTCTCTTCCATTTTCATCAAACACTGGTT
3992493 CTGCAAAAGA
Statistics
Matches: 185, Mismatches: 37, Indels: 17
0.77 0.15 0.07
Matches are distributed among these distances:
89 10 0.05
90 165 0.89
91 10 0.05
ACGTcount: A:0.22, C:0.25, G:0.10, T:0.43
Consensus pattern (90 bp):
CTTTTTATCAAACACTGGTTGCTCTCTTCCATTTTCATCAAACACTGGTTGCTCTCTTCCCTTTT
CATCAAACAATGAGTTGCTCTATTC
Found at i:3992954 original size:30 final size:27
Alignment explanation
Indices: 3992888--3992954 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 27
3992878 ACATAAATAC
3992888 TAAAAATAATATTATTTTATATATTTAA
1 TAAAAAT-ATATTATTTTATATATTTAA
**
3992916 TATTAATATATTATTTTAGTATCATTTTAA
1 TAAAAATATATTATTTTA-TAT-A-TTTAA
3992946 TAAAAATAT
1 TAAAAATAT
3992955 TAATTATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 11 0.34
28 8 0.25
29 1 0.03
30 12 0.38
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (27 bp):
TAAAAATATATTATTTTATATATTTAA
Found at i:3993100 original size:30 final size:30
Alignment explanation
Indices: 3993066--3993140 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 30
3993056 ATCGCTTTCT
* *
3993066 TTTTCATTAAACATTAGGCGCTCTCTTATA
1 TTTTCATTAAACATTAGGCGCTCTCTCACA
* * * * * *
3993096 TTTTCATCAAATATTAGGTGTTCTCTCCCC
1 TTTTCATTAAACATTAGGCGCTCTCTCACA
3993126 TTTTCATTAAACATT
1 TTTTCATTAAACATT
3993141 GAATGTTCTA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.25, C:0.21, G:0.08, T:0.45
Consensus pattern (30 bp):
TTTTCATTAAACATTAGGCGCTCTCTCACA
Found at i:3993316 original size:30 final size:30
Alignment explanation
Indices: 3993282--3993365 Score: 105
Period size: 30 Copynumber: 2.8 Consensus size: 30
3993272 TATTCTACCC
* * * *
3993282 TTTTCATAAAACATTGGGTGCTCTCTTTCT
1 TTTTCATCAAACATTGGTTGCTCTCTTCCG
* *
3993312 TTTTCATCAAACATTAGTTACTCTCTTCCG
1 TTTTCATCAAACATTGGTTGCTCTCTTCCG
*
3993342 TTTTCATCAAACATCGGTTGCTCT
1 TTTTCATCAAACATTGGTTGCTCT
3993366 AACATTGGTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.44
Consensus pattern (30 bp):
TTTTCATCAAACATTGGTTGCTCTCTTCCG
Found at i:3994292 original size:30 final size:29
Alignment explanation
Indices: 3993366--3994532 Score: 414
Period size: 30 Copynumber: 39.2 Consensus size: 29
3993356 CGGTTGCTCT
* * *
3993366 AACATTGGTTTCTCTCTTCACATTTCATCA
1 AACATTAGTTGCTCTCTTC-CTTTTCATCA
* * *
3993396 AACACTAGTTGTTCTCTTCCATTTTCGTCA
1 AACATTAGTTGCTCTCTTCC-TTTTCATCA
* * **
3993426 AACATT-TTGTGCTCTATTACCTTTTCGCCA
1 AACATTAGT-TGCTCTCTT-CCTTTTCATCA
* *
3993456 AATATT-GTGTGCTCTAC--CCTTTTCATAA
1 AACATTAGT-TGCTCT-CTTCCTTTTCATCA
* * *
3993484 AACATTAGTTACTCTATTCCATTTTTATCA
1 AACATTAGTTGCTCTCTTCC-TTTTCATCA
* *
3993514 AAC--TAGGTGCTCTCTTACTTTTTCATCA
1 AACATTAGTTGCTCTCTT-CCTTTTCATCA
* *
3993542 AACATT-GATTGCGCTCTTCTTTTTTCATCA
1 AACATTAG-TTGCTCTCTTC-CTTTTCATCA
* *
3993572 AACA-CAGGTTGGTCTCTTCTCTTTTCATCA
1 AACATTA-GTTGCTCTCTTC-CTTTTCATCA
* * * *
3993602 AACATTAGTTGTTATCTTCCCATTGCATCA
1 AACATTAGTTGCTCTCTT-CCTTTTCATCA
* *
3993632 AACACTAGTTGCTCTCTTTCCTTTTAATCA
1 AACATTAGTTGCTCTC-TTCCTTTTCATCA
* * *
3993662 AACACTGGTTGCTCTATTCCTTTTTCATCA
1 AACATTAGTTGCTCTCTTCC-TTTTCATCA
* * * * *
3993692 AACACTGGTTGCTTTCTTTCATATTCATCA
1 AACATTAGTTGCTCTC-TTCCTTTTCATCA
* *
3993722 AACATT-GTGTGCTCTCTTCTATTTTAATCA
1 AACATTAGT-TGCTCTCTTC-CTTTTCATCA
* ** * *
3993752 AACACTCA-TTAATGTCTTCCATTTTCATTA
1 AACA-TTAGTTGCTCTCTTCC-TTTTCATCA
* * * **
3993782 AACAATGGTTGTTCTCTTTTATTTTCATCA
1 AACATTAGTTGCTCTC-TTCCTTTTCATCA
* * * *
3993812 AATATT-G-CGCGCTCTTTCCTTTTTAAT-A
1 AACATTAGTTGCTCTC-TTCC-TTTTCATCA
* * * * *
3993840 AAAATTTGTTAC-CATCCTCCCTTTTTATCA
1 AACATTAGTTGCTC-T-CTTCCTTTTCATCA
* * *
3993870 AACATT-GCGTGCTCACTTCTCTTTTTATCA
1 AACATTAG-TTGCTCTCTTC-CTTTTCATCA
* ** **
3993900 AACATTGGTTATTAACTTCTCTTTTCATCA
1 AACATTAGTTGCTCTCTTC-CTTTTCATCA
* * *
3993930 AACATT-GTGTGCTCTCTTTTCTTTTTACCA
1 AACATTAGT-TGCTCTC-TTCCTTTTCATCA
* * *
3993960 AACACTTA-TTTCTCTCTTTTCTTTTTATCA
1 AACA-TTAGTTGCTCTC-TTCCTTTTCATCA
* * *
3993990 AACATTGGTTGTTCTCTTCCCTTTTCAACA
1 AACATTAGTTGCTCTCTT-CCTTTTCATCA
*
3994020 AACAAT-GTATGCTCTCTTCCCTTTTCATCA
1 AACATTAGT-TGCTCTCTT-CCTTTTCATCA
* * * * *
3994050 AACATT-GAT-ATTTGTTCCATGTTCATCA
1 AACATTAGTTGCTCTCTTCC-TTTTCATCA
* * *
3994078 AA-TTCTAGTAGCTCTTTTCCCTTTTCATCA
1 AACAT-TAGTTGCTCTCTT-CCTTTTCATCA
* *
3994108 AACA-TAGGTTACT-TCTTCCCTTTTTATCA
1 AACATTA-GTTGCTCTCTT-CCTTTTCATCA
* * * *
3994137 AACACT-GCATGTTTTCTTCCCTTTTCATCA
1 AACATTAG-TTGCTCTCTT-CCTTTTCATCA
* * * *
3994167 AACATTGGTTACTCTCTTCCCTTTTTATTA
1 AACATTAGTTGCTCTCTT-CCTTTTCATCA
* *
3994197 AACACTGGTTGCTCTCTTCCGTTTTC-TACA
1 AACATTAGTTGCTCTCTTCC-TTTTCAT-CA
* * * ** *
3994227 AACACTGGTTTCTCTCTTTTTTTTCATTA
1 AACATTAGTTGCTCTCTTCCTTTTCATCA
3994256 AACATTAGTTGCTCTCTTCCTTTCTCATCA
1 AACATTAGTTGCTCTCTTCCTTT-TCATCA
* *
3994286 AACATTA-TGTGTTCTCGTCCGTTTTCATCA
1 AACATTAGT-TGCTCTCTTCC-TTTTCATCA
* * * ** * * *
3994316 AATACTGGTTATTCTCCTCCCTTTTAATGA
1 AACATTAGTTGCTCT-CTTCCTTTTCATCA
*** * *
3994346 AATGGTAGTTGTTCTCTTCCCTTTCGATCA
1 AACATTAGTTGCTCTCTTCCTTTTC-ATCA
* *
3994376 AACACT-GCGTGCTCTCTTTCCTTTTTCATCAA
1 AACATTAG-TTGCTCTC-TTCC-TTTTCATC-A
* * *
3994408 AAAATT-GTTGCTCTATTTCTTTTTCATCA
1 AACATTAGTTGCTCT-CTTCCTTTTCATCA
* *
3994437 AACACTACG-TGTTCTCTTTCCTTTTCATCA
1 AACATTA-GTTGCTCTC-TTCCTTTTCATCA
* * * *
3994467 AACGA-TGGTTTCTCTATTTCCTATTCATCA
1 AAC-ATTAGTTGCTCT-CTTCCTTTTCATCA
* * *
3994497 AACATTGGGTGCTCTCTTCCCTTTTTATCA
1 AACATTAGTTGCTCTCTT-CCTTTTCATCA
*
3994527 TACATT
1 AACATT
3994533 TTTTAATTTA
Statistics
Matches: 860, Mismatches: 200, Indels: 154
0.71 0.16 0.13
Matches are distributed among these distances:
27 3 0.00
28 68 0.08
29 114 0.13
30 615 0.72
31 50 0.06
32 10 0.01
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.45
Consensus pattern (29 bp):
AACATTAGTTGCTCTCTTCCTTTTCATCA
Found at i:3995786 original size:29 final size:28
Alignment explanation
Indices: 3995754--3995858 Score: 101
Period size: 29 Copynumber: 3.6 Consensus size: 28
3995744 CTTCTTCCGT
3995754 TTTCATCAAACTA-TGGTTGCAATCTTTCA
1 TTTCATCAAAC-ACTGGTTGC-ATCTTTCA
* *
3995783 TTTCATCAAACATTGAG-TGC-TCTCTTCCT
1 TTTCATCAAACACTG-GTTGCATCT-TT-CA
3995812 TTTCATCAAACACTGGTTG-ATCTCTTCCA
1 TTTCATCAAACACTGGTTGCATCT-TT-CA
3995841 TTTCATCAAACACTGGTT
1 TTTCATCAAACACTGGTT
3995859 ACTCTCTTCC
Statistics
Matches: 67, Mismatches: 3, Indels: 12
0.82 0.04 0.15
Matches are distributed among these distances:
27 3 0.04
28 4 0.06
29 59 0.88
30 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (28 bp):
TTTCATCAAACACTGGTTGCATCTTTCA
Found at i:3995864 original size:29 final size:29
Alignment explanation
Indices: 3995723--3996036 Score: 244
Period size: 30 Copynumber: 10.7 Consensus size: 29
3995713 TACTTCTTTT
*
3995723 CTTTTTATCAAACACT-GTGTGCT-TCTTC
1 CTTTTCATCAAACACTGGT-TGCTCTCTTC
** *
3995751 CGTTTTCATCAAACTA-TGGTTGCAATCTTT
1 C-TTTTCATCAAAC-ACTGGTTGCTCTCTTC
* *
3995781 CATTTCATCAAACATTGAG-TGCTCTCTTC
1 CTTTTCATCAAACACTG-GTTGCTCTCTTC
*
3995810 CTTTTCATCAAACACTGGTTGATCTCTTC
1 CTTTTCATCAAACACTGGTTGCTCTCTTC
* *
3995839 CATTTCATCAAACACTGGTTACTCTCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTT-C
* * ** *
3995869 CTTTTCATCAAATACTAGTTATTCTATTC
1 CTTTTCATCAAACACTGGTTGCTCTCTTC
* * *
3995898 CATTTTCATGAAACACTGGTTGTTTTCTTCC
1 C-TTTTCATCAAACACTGGTTGCTCTCTT-C
*
3995929 CTTTTGATCAAACACTGCG-TGCTCTCTTCC
1 CTTTTCATCAAACACTG-GTTGCTCTCTT-C
* * * *
3995959 CTTCTCATCAAACAATGGTTGCTCTATTTT
1 CTTTTCATCAAACACTGGTTGCTCT-CTTC
* * **
3995989 CTTTTTATCAAACAATGCATGCTCTCTT-
1 CTTTTCATCAAACACTGGTTGCTCTCTTC
* *
3996017 CATTTCATTAAACACTGGTT
1 CTTTTCATCAAACACTGGTT
3996037 CTGCAAAAGA
Statistics
Matches: 229, Mismatches: 44, Indels: 26
0.77 0.15 0.09
Matches are distributed among these distances:
28 17 0.07
29 89 0.39
30 118 0.52
31 5 0.02
ACGTcount: A:0.23, C:0.25, G:0.10, T:0.42
Consensus pattern (29 bp):
CTTTTCATCAAACACTGGTTGCTCTCTTC
Found at i:3996497 original size:30 final size:27
Alignment explanation
Indices: 3996431--3996497 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 27
3996421 ACATAAATAC
3996431 TAAAAATAATATTATTTTATATATTTAA
1 TAAAAAT-ATATTATTTTATATATTTAA
**
3996459 TATTAATATATTATTTTAGTATCATTTTAA
1 TAAAAATATATTATTTTA-TAT-A-TTTAA
3996489 TAAAAATAT
1 TAAAAATAT
3996498 TAATTATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 11 0.34
28 8 0.25
29 1 0.03
30 12 0.38
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (27 bp):
TAAAAATATATTATTTTATATATTTAA
Found at i:3996851 original size:30 final size:30
Alignment explanation
Indices: 3996817--3996900 Score: 105
Period size: 30 Copynumber: 2.8 Consensus size: 30
3996807 TATTCTACCC
* * * *
3996817 TTTTCATAAAACATTGGGTGCTCTCTTTCT
1 TTTTCATCAAACATTGGTTGCTCTCTTCCG
* *
3996847 TTTTCATCAAACATTAGTTACTCTCTTCCG
1 TTTTCATCAAACATTGGTTGCTCTCTTCCG
*
3996877 TTTTCATCAAACATCGGTTGCTCT
1 TTTTCATCAAACATTGGTTGCTCT
3996901 AACATTGGTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.44
Consensus pattern (30 bp):
TTTTCATCAAACATTGGTTGCTCTCTTCCG
Found at i:3996917 original size:186 final size:187
Alignment explanation
Indices: 3996684--3997083 Score: 574
Period size: 186 Copynumber: 2.1 Consensus size: 187
3996674 CATTGAATGT
* *
3996684 TCTCTTCCATTTTCATC-AACATCGTTGCTCTAACATTGGTTTCTCTCTTCACATTTCTTCAAGC
1 TCTCTTCCATTTTCATCAAACATCGTTGCTCTAACATTGGTTTCTCTCTTCACATTTCATCAAAC
*
3996748 ACTGGTTGTTCTCTTCCATTTTCGTCAAACATTTTGTGCTCTATTACCTTTTCGACAAATA-T-T
66 ACTAGTTGTTCTCTTCCATTTTCGTCAAACATTTTGTGCTCTATTACCTTTTCGACAAATATTCT
* * * * * *
3996811 CTACCCTTTTCATAAAACATTGGGTGCTCTCTTTC-TTTTTCATCAAACATTAGTTAC
131 CTACCCTTTTCATAAAACATTAGGTACTCTATTCCATTTTT-ATCAAACACTAGGTAC
*
3996868 TCTCTTCCGTTTTCATCAAACATCGGTTGCTCTAACATTGGTTTCTCTCTTCACATTTCATCAAA
1 TCTCTTCCATTTTCATCAAACATC-GTTGCTCTAACATTGGTTTCTCTCTTCACATTTCATCAAA
*
3996933 CACTAGTTGTTCTCTTCCATTTTCGTCAAACATTTTGTGCTCTATTACCTTTTCGCCAAATATTG
65 CACTAGTTGTTCTCTTCCATTTTCGTCAAACATTTTGTGCTCTATTACCTTTTCGACAAATA---
* *
3996998 TGTGCTCTACCCTTTTCATAAAACATTAGTTACTCTATTCCATTTTTATCAAACACTAGGTGC
127 T-T-CTCTACCCTTTTCATAAAACATTAGGTACTCTATTCCATTTTTATCAAACACTAGGTAC
* *
3997061 TCTCTTACTTTTTCATCAAACAT
1 TCTCTTCCATTTTCATCAAACAT
3997084 TGATTGCGCT
Statistics
Matches: 191, Mismatches: 15, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
184 16 0.08
185 6 0.03
186 98 0.51
191 1 0.01
193 65 0.34
194 5 0.03
ACGTcount: A:0.22, C:0.26, G:0.09, T:0.43
Consensus pattern (187 bp):
TCTCTTCCATTTTCATCAAACATCGTTGCTCTAACATTGGTTTCTCTCTTCACATTTCATCAAAC
ACTAGTTGTTCTCTTCCATTTTCGTCAAACATTTTGTGCTCTATTACCTTTTCGACAAATATTCT
CTACCCTTTTCATAAAACATTAGGTACTCTATTCCATTTTTATCAAACACTAGGTAC
Found at i:3997764 original size:29 final size:30
Alignment explanation
Indices: 3996901--3998058 Score: 465
Period size: 30 Copynumber: 39.0 Consensus size: 30
3996891 CGGTTGCTCT
* * * *
3996901 AACATTGGTTTCTCTCTTCACATTTCATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* * * *
3996931 AACACTAGTTGTTCTCTTCCATTTTCGTCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
** * * **
3996961 AACA-TTTTGTGCTCTATTACCTTTTCGCCA
1 AACACTGGT-TGCTCTCTTCCCTTTTCATCA
* * * *
3996991 AATA-TTG-TG-TGCTCTACCCTTTTCATAA
1 AACACTGGTTGCT-CTCTTCCCTTTTCATCA
* * * * * *
3997019 AACATTAGTTACTCTATTCCATTTTTATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* *
3997049 AACACTAGG-TGCTCTCTTACTTTTTCATCA
1 AACACT-GGTTGCTCTCTTCCCTTTTCATCA
* * * **
3997079 AACATTGATTGCGCTCTTCTTTTTTCATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* * *
3997109 AACACAGGTTGGTCTCTTCTCTTTTCATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* * * * * *
3997139 AACATTAGTTGTTATCTTCCCATTGCATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* * *
3997169 AACACTAGTTGCTCTCTTTCCTTTTAATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* *
3997199 AACACTGGTTGCTCTATTCCTTTTTCATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* * * *
3997229 AACACTGGTTGCTTTCTTTCATATTCATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* ** *
3997259 AACA-TTGTGTGCTCTCTTCTATTTTAATCA
1 AACACTGGT-TGCTCTCTTCCCTTTTCATCA
** ** * * *
3997289 AACACTCATTAATGTCTTCCATTTTCATTA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* * ***
3997319 AACAATGGTTGTTCTCTTTTATTTTCATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* * * * *
3997349 AATATTGCG-CGCTCT-TTCCTTTTTAAT-A
1 AACACTG-GTTGCTCTCTTCCCTTTTCATCA
* * * * * *
3997377 AAAATTTGTTAC-CATCCTCCCTTTTTATCA
1 AACACTGGTTGCTC-TCTTCCCTTTTCATCA
* * * *
3997407 AACATTGCG-TGCTCACTTCTCTTTTTATCA
1 AACACTG-GTTGCTCTCTTCCCTTTTCATCA
* ** ** *
3997437 AACATTGGTTATTAACTTCTCTTTTCATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* ** * *
3997467 AACA-TTGTGTGCTCTCTTTTCTTTTTACCA
1 AACACTGGT-TGCTCTCTTCCCTTTTCATCA
** * ** *
3997497 AACACTTATTTCTCTCTTTTCTTTTTATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* * *
3997527 AACATTGGTTGTTCTCTTCCCTTTTCAACA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
*
3997557 AACAAT-GTATGCTCTCTTCCCTTTTCATCA
1 AACACTGGT-TGCTCTCTTCCCTTTTCATCA
* * * * *
3997587 AACATTGATAT--T-TGTTCCATGTTCATCA
1 AACACTGGT-TGCTCTCTTCCCTTTTCATCA
** * * *
3997615 AATTCTAGTAGCTCTTTTCCCTTTTCATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* *
3997645 AACA-TAGGTTACT-TCTTCCCTTTTTATCA
1 AACACT-GGTTGCTCTCTTCCCTTTTCATCA
** * *
3997674 AACACTGCATGTTTTCTTCCCTTTTCATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* * *
3997704 AACATTGGTTACTCTCTT-CC-TTT-ATTA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
*
3997731 AACACTGGTTGCTCTCTTCCGTTTTCA-CA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* * *** *
3997760 AACACTGGTTTCTCTTTTTTTTTTTTTCATTA
1 AACACTGGTTGCTC--TCTTCCCTTTTCATCA
*
3997792 AACA-TAGTTGCTGCTC-TCTCCTTTCTCATCA
1 AACACTGGTTGCT-CTCTTC-CCTTT-TCATCA
** * * *
3997823 AACA-TTATGTGTTCTCGTCCGTTTTCATCA
1 AACACTGGT-TGCTCTCTTCCCTTTTCATCA
* ** * * *
3997853 AATACTGGTTATTCTCCT-CCTTTTAATGA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
*** * *
3997882 AATGGTAGTTGTTCTCTTCCC--TTCGATCA
1 AACACTGGTTGCTCTCTTCCCTTTTC-ATCA
*
3997911 AACACTGCG-TGCTCTCTTCCTTTTTCATCA
1 AACACTG-GTTGCTCTCTTCCCTTTTCATCA
* * * * *
3997941 AAAAATTGTTGCTCTATT-TCTTTTCATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
* * *
3997970 AACACTACG-TGTTCTCTTTCCTTTTCATCA
1 AACACT-GGTTGCTCTCTTCCCTTTTCATCA
* * * *
3998000 AACGA-TGGTTTCTCTATTTCCTATTCATCA
1 AAC-ACTGGTTGCTCTCTTCCCTTTTCATCA
* *
3998030 AACATTGGGTGCTCTCTTCCCTTTT-ATCA
1 AACACTGGTTGCTCTCTTCCCTTTTCATCA
3998059 TACATTTTTA
Statistics
Matches: 836, Mismatches: 242, Indels: 101
0.71 0.21 0.09
Matches are distributed among these distances:
27 22 0.03
28 47 0.06
29 139 0.17
30 565 0.68
31 52 0.06
32 11 0.01
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.45
Consensus pattern (30 bp):
AACACTGGTTGCTCTCTTCCCTTTTCATCA
Found at i:3997972 original size:59 final size:60
Alignment explanation
Indices: 3997907--3998059 Score: 184
Period size: 59 Copynumber: 2.5 Consensus size: 60
3997897 CTTCCCTTCG
* *
3997907 ATCAAACACTGCGTGCTCTCTTCCTTTTTCATCAAAAAATTGTTGCTCTATTT-CTTTTC
1 ATCAAACACTGCGTGCTCTCTTCCTTTTTCATCAAAAAATGGTTGCTCTATTTCCTATTC
* * ** *
3997966 ATCAAACACTACGTGTTCTCTTTCC-TTTTCATCAAACGATGGTTTCTCTATTTCCTATTC
1 ATCAAACACTGCGTGCTCTC-TTCCTTTTTCATCAAAAAATGGTTGCTCTATTTCCTATTC
* *
3998026 ATCAAACATTGGGTGCTCTCTTCCCTTTTATCAT
1 ATCAAACACTGCGTGCTCTCTT-CCTTTT-TCAT
3998060 ACATTTTTAA
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
59 44 0.56
60 27 0.35
61 3 0.04
62 4 0.05
ACGTcount: A:0.22, C:0.26, G:0.09, T:0.43
Consensus pattern (60 bp):
ATCAAACACTGCGTGCTCTCTTCCTTTTTCATCAAAAAATGGTTGCTCTATTTCCTATTC
Found at i:3999332 original size:59 final size:60
Alignment explanation
Indices: 3999257--3999548 Score: 226
Period size: 59 Copynumber: 4.9 Consensus size: 60
3999247 CTGTGTGCTT
* * *
3999257 TCTTCCGTTTTCATCAAACTA-TGGTTGCAATCT-TT-CATTTTCATCAAACATTGAG-TGCTC
1 TCTTCCCTTTTCATCAAAC-ACTGGTTG--ATCTCTTCCATTTTCATCAAACACTG-GTTACTC
*
3999317 TCTT-CTTTTTCATCAAACACTGGTTGATCTCTTCCATTTTCATCAAACACTGGTTACTC
1 TCTTCCCTTTTCATCAAACACTGGTTGATCTCTTCCATTTTCATCAAACACTGGTTACTC
* * * * ** *
3999376 TCTTCCCTTTTCATCAAATACTAGTT-ATTCTATTCCATTTTCATGAAACACTGGTTGTTT
1 TCTTCCCTTTTCATCAAACACTGGTTGA-TCTCTTCCATTTTCATCAAACACTGGTTACTC
* * * * *
3999436 TCTTCCCTTTTGATC-AA-ACTGCG-TGCTCTCTTCCCTTCTCATCAAACA-TGGTTGCTC
1 TCTTCCCTTTTCATCAAACACTG-GTTGATCTCTTCCATTTTCATCAAACACTGGTTACTC
* ** * * ** * * *
3999493 TATTTTCTTTTTATCAAACAATGCATGCTCTCTTTCATTTTCATTAAACACTGGTT
1 TCTTCCCTTTTCATCAAACACTGGTTGATCTCTTCCATTTTCATCAAACACTGGTT
3999549 CTGCAAAAGA
Statistics
Matches: 190, Mismatches: 30, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
57 22 0.12
58 28 0.15
59 72 0.38
60 68 0.36
ACGTcount: A:0.22, C:0.25, G:0.10, T:0.43
Consensus pattern (60 bp):
TCTTCCCTTTTCATCAAACACTGGTTGATCTCTTCCATTTTCATCAAACACTGGTTACTC
Found at i:3999334 original size:29 final size:30
Alignment explanation
Indices: 3999236--3999548 Score: 234
Period size: 30 Copynumber: 10.6 Consensus size: 30
3999226 ACTTCTTTTC
* *
3999236 TTTT-ATC-AACACT-GTGTGCTTTCTTCCG
1 TTTTCATCAAACACTGGT-TGCTCTCTTCCA
** *
3999264 TTTTCATCAAACTA-TGGTTGCAATCTTTCA
1 TTTTCATCAAAC-ACTGGTTGCTCTCTTCCA
* *
3999294 TTTTCATCAAACATTGAG-TGCTCTCTT-CT
1 TTTTCATCAAACACTG-GTTGCTCTCTTCCA
*
3999323 TTTTCATCAAACACTGGTTGATCTCTTCCA
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
* *
3999353 TTTTCATCAAACACTGGTTACTCTCTTCCC
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
* * ** *
3999383 TTTTCATCAAATACTAGTTATTCTATTCCA
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
* * * *
3999413 TTTTCATGAAACACTGGTTGTTTTCTTCCC
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
* *
3999443 TTTTGATC-AA-ACTGCG-TGCTCTCTTCCC
1 TTTTCATCAAACACTG-GTTGCTCTCTTCCA
* * *
3999471 TTCTCATCAAACA-TGGTTGCTCTATTTTC-
1 TTTTCATCAAACACTGGTTGCTCT-CTTCCA
* * ** *
3999500 TTTTTATCAAACAATGCATGCTCTCTTTCA
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
*
3999530 TTTTCATTAAACACTGGTT
1 TTTTCATCAAACACTGGTT
3999549 CTGCAAAAGA
Statistics
Matches: 227, Mismatches: 43, Indels: 28
0.76 0.14 0.09
Matches are distributed among these distances:
28 26 0.11
29 56 0.25
30 141 0.62
31 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.10, T:0.44
Consensus pattern (30 bp):
TTTTCATCAAACACTGGTTGCTCTCTTCCA
Found at i:4000002 original size:30 final size:27
Alignment explanation
Indices: 3999936--4000002 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 27
3999926 ACATAAATAC
3999936 TAAAAATAATATTATTTTATATATTTAA
1 TAAAAAT-ATATTATTTTATATATTTAA
**
3999964 TATTAATATATTATTTTAGTATCATTTTAA
1 TAAAAATATATTATTTTA-TAT-A-TTTAA
3999994 TAAAAATAT
1 TAAAAATAT
4000003 TAATTATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 11 0.34
28 8 0.25
29 1 0.03
30 12 0.38
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (27 bp):
TAAAAATATATTATTTTATATATTTAA
Found at i:4000148 original size:30 final size:30
Alignment explanation
Indices: 4000114--4000188 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 30
4000104 ATCGCTTTCT
* *
4000114 TTTTCATTAAACATTAGGCGCTCTCTTATA
1 TTTTCATTAAACATTAGGCGCTCTCTCACA
* * * * * *
4000144 TTTTCATCAAATATTAGGTGTTCTCTCCCC
1 TTTTCATTAAACATTAGGCGCTCTCTCACA
4000174 TTTTCATTAAACATT
1 TTTTCATTAAACATT
4000189 GAATGTTCTC
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.25, C:0.21, G:0.08, T:0.45
Consensus pattern (30 bp):
TTTTCATTAAACATTAGGCGCTCTCTCACA
Found at i:4000457 original size:30 final size:29
Alignment explanation
Indices: 4000421--4001536 Score: 356
Period size: 30 Copynumber: 37.8 Consensus size: 29
4000411 ACATTGGTTT
*
4000421 CTCTCTTCACATTTCATCAAACACTAGTTG
1 CTCTCTTC-CTTTTCATCAAACACTAGTTG
* * **
4000451 TTCTCTTCCATTTTCGTCAAACA-TTTTGTG
1 CTCTCTTCC-TTTTCATCAAACACTAGT-TG
* ** * *
4000481 CTCTATTACCTTTTCGCCAAATA-TTGTGTG
1 CTCTCTT-CCTTTTCATCAAACACTAGT-TG
* * *
4000511 CTCTAC--CCTTTTCATAAAACATTAGTTA
1 CTCT-CTTCCTTTTCATCAAACACTAGTTG
* * *
4000539 CTCTATTCCATTTTTATCAAACACTAGGTG
1 CTCTCTTCC-TTTTCATCAAACACTAGTTG
* *
4000569 CTCTCTTACTTTTTCATCAAACA-TTGATTG
1 CTCTCTT-CCTTTTCATCAAACACTAG-TTG
* *
4000599 CGCTCTTCTTTTTTCATCAAACAC-AGGTTG
1 CTCTCTTC-CTTTTCATCAAACACTA-GTTG
* *
4000629 GTCTCTTCTCTTTTCATCAAACATTAGTTG
1 CTCTCTTC-CTTTTCATCAAACACTAGTTG
* * * *
4000659 TTATCTTCCCATTGCATCAAACACTAGTTG
1 CTCTCTT-CCTTTTCATCAAACACTAGTTG
* *
4000689 CTCTCTTTCCTTTTAATCAAACACTGGTTG
1 CTCTC-TTCCTTTTCATCAAACACTAGTTG
* *
4000719 CTCTATTCCTTTTTCATCAAACACTGGTTG
1 CTCTCTTCC-TTTTCATCAAACACTAGTTG
* * * *
4000749 CTTTCTTTCATATTCATCAAACA-TTGTGTG
1 CTCTC-TTCCTTTTCATCAAACACTAGT-TG
* * *
4000779 CTCTCTTCTATTTTAATCAAACACTCA-TTA
1 CTCTCTTC-CTTTTCATCAAACACT-AGTTG
* * * * *
4000809 ATGTCTTCCATTTTCATTAAACAATGGTTG
1 CTCTCTTCC-TTTTCATCAAACACTAGTTG
* ** * * *
4000839 TTCTCTTTATTTTCATCAAATA-TTG-CG
1 CTCTCTTCCTTTTCATCAAACACTAGTTG
* * * * * *
4000866 CGCTCTTCCTTTTTAAT-AAAAATTTGTTA
1 CTCTCTTCC-TTTTCATCAAACACTAGTTG
* * * *
4000895 C-CATCCTCCCTTTTTATCAAACA-TTGCGTG
1 CTC-T-CTTCCTTTTCATCAAACACTAG-TTG
* * * * *
4000925 CTCACTTCTCTTTTTATCAAACATTGGTTA
1 CTCTCTTC-CTTTTCATCAAACACTAGTTG
* ** *
4000955 TTAACTTCTCTTTTCATCAAACA-TTGTGTG
1 CTCTCTTC-CTTTTCATCAAACACTAGT-TG
* * * *
4000985 CTCTCTTTTCTTTTTACCAAACACTTA-TTT
1 CTCTC-TTCCTTTTCATCAAACAC-TAGTTG
* * * *
4001015 CTCTCTTTTCTTTTTATCAAACATTGGTTG
1 CTCTC-TTCCTTTTCATCAAACACTAGTTG
* * * *
4001045 TTCTCTTCCCTTTCAACAAACAAT-GTATG
1 CTCTCTTCCTTTTCATCAAACACTAGT-TG
* *
4001074 CTCTCTTCCCTTTTCATCAAACA-TTGAT-
1 CTCTCTT-CCTTTTCATCAAACACTAGTTG
* * * ** *
4001102 AT-TGTTCCATGTTCATCAAATTCTAGTAG
1 CTCTCTTCC-TTTTCATCAAACACTAGTTG
* *
4001131 CTCTTTTCCTTTTCATCAAACA-TAGGTTTA
1 CTCTCTTCCTTTTCATCAAACACTA-G-TTG
4001161 CT-TCTTCCCTTTT-ATCAAACACT-GTATG
1 CTCTCTT-CCTTTTCATCAAACACTAGT-TG
* * * * *
4001189 -TTTTTTCCCTTTTCATC-AACATTGGTTACT
1 CTCTCTT-CCTTTTCATCAAACACTAGTT--G
* * *
4001219 CTCTCTTCCCTTTTTATTAAACACTGGTTG
1 CTCTCTT-CCTTTTCATCAAACACTAGTTG
* *
4001249 CTCTCTTCCGTTTTC-TACAAACA-TGGTTT
1 CTCTCTTCC-TTTTCAT-CAAACACTAGTTG
* *
4001278 CTCTCTT-TTTTTCATTAAACA-TAGTTG
1 CTCTCTTCCTTTTCATCAAACACTAGTTG
*
4001305 CTCTCTTCCTTTCTCATCAAACATTA-TGTG
1 CTCTCTTCCTTT-TCATCAAACACTAGT-TG
* * * * *
4001335 TTCTCGTCCGTTTTCATCAAATACTGGTTA
1 CTCTCTTCC-TTTTCATCAAACACTAGTTG
* * * * ***
4001365 TTCTCCTCCTTTTAATGAAATGGTAGTTG
1 CTCTCTTCCTTTTCATCAAACACTAGTTG
* * *
4001394 TTCTCTTCCCTTTCGATCAAACACT-GCGTG
1 CTCTCTTCCTTTTC-ATCAAACACTAG-TTG
* * *
4001424 CTCTCTTTCATTTTTCATCAAA-AATTGTTG
1 CTCTC-TTC-CTTTTCATCAAACACTAGTTG
* *
4001454 CTCTATTTCTTTTTCATCAAACACTACG-TG
1 CTCT-CTTCCTTTTCATCAAACACTA-GTTG
* * *
4001484 TTCTCTTTCCTTTTCATCAAACGA-TGGTTT
1 CTCTC-TTCCTTTTCATCAAAC-ACTAGTTG
* *
4001514 CTCTATTTCCTATTCATCAAACA
1 CTCT-CTTCCTTTTCATCAAACA
4001537 TTGGCTCTCT
Statistics
Matches: 817, Mismatches: 190, Indels: 159
0.70 0.16 0.14
Matches are distributed among these distances:
26 2 0.00
27 46 0.06
28 57 0.07
29 167 0.20
30 483 0.59
31 48 0.06
32 14 0.02
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.45
Consensus pattern (29 bp):
CTCTCTTCCTTTTCATCAAACACTAGTTG
Found at i:4001066 original size:29 final size:31
Alignment explanation
Indices: 4001032--4001329 Score: 104
Period size: 29 Copynumber: 10.3 Consensus size: 31
4001022 TTCTTTTTAT
*
4001032 CAAACATTGGT-TGTTCTCTTCCC-TTTCAA
1 CAAACATTGGTATGCTCTCTTCCCTTTTCAA
* *
4001061 CAAACAAT-GTATGCTCTCTTCCCTTTTCAT
1 CAAACATTGGTATGCTCTCTTCCCTTTTCAA
* * * * *
4001091 CAAACATT-G-AT-AT-TGTTCCATGTTCAT
1 CAAACATTGGTATGCTCTCTTCCCTTTTCAA
* * * *
4001118 CAAA-TTCTAGTA-GCTCT-TTTCCTTTTCAT
1 CAAACAT-TGGTATGCTCTCTTCCCTTTTCAA
* * * *
4001147 CAAACATAGGTTTACT-TCTTCCCTTTT-AT
1 CAAACATTGGTATGCTCTCTTCCCTTTTCAA
* * * *
4001176 CAAACACT-GTATG-TTTTTTCCCTTTTCAT
1 CAAACATTGGTATGCTCTCTTCCCTTTTCAA
* *
4001205 C-AACATTGGTTACT-CTCTCTTCCCTTTTTAT
1 CAAACATTGG-TA-TGCTCTCTTCCCTTTTCAA
* * * *
4001236 TAAACACTGGT-TGCTCTCTTCCGTTTTCTA
1 CAAACATTGGTATGCTCTCTTCCCTTTTCAA
* * *
4001266 CAAACA-TGGT-TTCTCTCTT--TTTTTCAT
1 CAAACATTGGTATGCTCTCTTCCCTTTTCAA
* * *
4001293 TAAACA-TAGT-TGCTCTCTT-CCTTTCTCAT
1 CAAACATTGGTATGCTCTCTTCCCTTT-TCAA
4001322 CAAACATT
1 CAAACATT
4001330 ATGTGTTCTC
Statistics
Matches: 204, Mismatches: 44, Indels: 41
0.71 0.15 0.14
Matches are distributed among these distances:
26 1 0.00
27 38 0.19
28 25 0.12
29 72 0.35
30 46 0.23
31 15 0.07
32 7 0.03
ACGTcount: A:0.22, C:0.26, G:0.08, T:0.45
Consensus pattern (31 bp):
CAAACATTGGTATGCTCTCTTCCCTTTTCAA
Found at i:4002764 original size:29 final size:30
Alignment explanation
Indices: 4002727--4003036 Score: 177
Period size: 29 Copynumber: 10.6 Consensus size: 30
4002717 ACTTCTTTTC
* * *
4002727 TTTTTATCAAACACT-GTGTGCTTTC-TCCG
1 TTTTCATCAAACACTGGT-TGCTCTCTTCCA
** *
4002756 TTTTCATCAAACTA-TGGTTGCAATCTTTCA
1 TTTTCATCAAAC-ACTGGTTGCTCTCTTCCA
*
4002786 TTTTCATCAAACATTGAG-TGCTCTCTTCC-
1 TTTTCATCAAACACTG-GTTGCTCTCTTCCA
*
4002815 TTTTCATCAAACACTGGTTG--ATCTTCCA
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
*
4002843 TTTTCATCAAACACTGGTTTACTCTCTTCC-
1 TTTTCATCAAACACTGG-TTGCTCTCTTCCA
* * *
4002873 -TTTCATCAAATACTAGTT-AT-TCTAT-CA
1 TTTTCATCAAACACTGGTTGCTCTCT-TCCA
* * * *
4002900 TTTTCAT-GAACACTGGTTTGTTTTCTTCCC
1 TTTTCATCAAACACTGG-TTGCTCTCTTCCA
* *
4002930 TTTTGATCAAACACTGCG-TGCTCTCTTCCC
1 TTTTCATCAAACACTG-GTTGCTCTCTTCCA
* * * *
4002960 TTCTCATC-AACAATGGTTGCTCTATTTTC-
1 TTTTCATCAAACACTGGTTGCTCT-CTTCCA
* * ** *
4002989 TTTTTATC-AACAATGCATGCTCTCTTTCA
1 TTTTCATCAAACACTGGTTGCTCTCTTCCA
*
4003018 TTTTCATTAAACACTGGTT
1 TTTTCATCAAACACTGGTT
4003037 CTGCAAAACA
Statistics
Matches: 219, Mismatches: 39, Indels: 45
0.72 0.13 0.15
Matches are distributed among these distances:
26 4 0.02
27 14 0.06
28 33 0.15
29 90 0.41
30 63 0.29
31 14 0.06
32 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.10, T:0.44
Consensus pattern (30 bp):
TTTTCATCAAACACTGGTTGCTCTCTTCCA
Found at i:4002792 original size:30 final size:29
Alignment explanation
Indices: 4002756--4002861 Score: 121
Period size: 28 Copynumber: 3.7 Consensus size: 29
4002746 GCTTTCTCCG
4002756 TTTTCATCAAACTA-TGGTTGCAATCTTTCA
1 TTTTCATCAAAC-ACTGGTTGC-ATCTTTCA
* *
4002786 TTTTCATCAAACATTGAG-TGC-TCTCTTCC
1 TTTTCATCAAACACTG-GTTGCATCT-TTCA
*
4002815 TTTTCATCAAACACTGGTTG-ATCTTCCA
1 TTTTCATCAAACACTGGTTGCATCTTTCA
4002843 TTTTCATCAAACACTGGTT
1 TTTTCATCAAACACTGGTT
4002862 TACTCTCTTC
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
28 25 0.37
29 24 0.36
30 17 0.25
31 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.10, T:0.42
Consensus pattern (29 bp):
TTTTCATCAAACACTGGTTGCATCTTTCA
Found at i:4002855 original size:28 final size:29
Alignment explanation
Indices: 4002756--4002861 Score: 121
Period size: 30 Copynumber: 3.7 Consensus size: 29
4002746 GCTTTCTCCG
*
4002756 TTTTCATCAAACTA-TGGTTGCAATCTTTCA
1 TTTTCATCAAAC-ACTGGTTGC-ATCTTCCA
* *
4002786 TTTTCATCAAACATTGAG-TGCTCTCTTCC-
1 TTTTCATCAAACACTG-GTTGC-ATCTTCCA
4002815 TTTTCATCAAACACTGGTTG-ATCTTCCA
1 TTTTCATCAAACACTGGTTGCATCTTCCA
4002843 TTTTCATCAAACACTGGTT
1 TTTTCATCAAACACTGGTT
4002862 TACTCTCTTC
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
27 6 0.09
28 20 0.30
29 18 0.27
30 22 0.33
31 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.10, T:0.42
Consensus pattern (29 bp):
TTTTCATCAAACACTGGTTGCATCTTCCA
Found at i:4002877 original size:57 final size:57
Alignment explanation
Indices: 4002727--4002945 Score: 193
Period size: 57 Copynumber: 3.8 Consensus size: 57
4002717 ACTTCTTTTC
* * *
4002727 TTTTTATCAAACACT-GTGTGCTTTC-TCCGTTTTCATCAAACTA-TGGTTGCAATCTTTCA
1 TTTTCATCAAACACTGGTTTGCTCTCTTCC-TTTTCATCAAAC-ACTGGTTG--ATC-TTCA
*
4002786 TTTTCATCAAACATTGAG--TGCTCTCTTCCTTTTCATCAAACACTGGTTGATCTTCCA
1 TTTTCATCAAACACTG-GTTTGCTCTCTTCCTTTTCATCAAACACTGGTTGATCTT-CA
* * *
4002843 TTTTCATCAAACACTGGTTTACTCTCTTCC-TTTCATCAAATACTAGTT-ATTCTATCA
1 TTTTCATCAAACACTGGTTTGCTCTCTTCCTTTTCATCAAACACTGGTTGA-TCT-TCA
* * * *
4002900 TTTTCAT-GAACACTGGTTTGTTTTCTTCCCTTTTGATCAAACACTG
1 TTTTCATCAAACACTGGTTTGCTCTCTT-CCTTTTCATCAAACACTG
4002946 CGTGCTCTCT
Statistics
Matches: 135, Mismatches: 14, Indels: 23
0.78 0.08 0.13
Matches are distributed among these distances:
56 20 0.15
57 50 0.37
58 24 0.18
59 37 0.27
60 3 0.02
61 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.10, T:0.43
Consensus pattern (57 bp):
TTTTCATCAAACACTGGTTTGCTCTCTTCCTTTTCATCAAACACTGGTTGATCTTCA
Found at i:4003455 original size:27 final size:30
Alignment explanation
Indices: 4003425--4003479 Score: 89
Period size: 27 Copynumber: 1.9 Consensus size: 30
4003415 AAATACTAAA
4003425 AATATATTATTTTA-TAT-A-TTTAATATT
1 AATATATTATTTTAGTATCATTTTAATATT
4003452 AATATATTATTTTAGTATCATTTTAATA
1 AATATATTATTTTAGTATCATTTTAATA
4003480 AAAATATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 14 0.56
28 3 0.12
29 1 0.04
30 7 0.28
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (30 bp):
AATATATTATTTTAGTATCATTTTAATATT
Found at i:4003486 original size:30 final size:27
Alignment explanation
Indices: 4003421--4003486 Score: 87
Period size: 27 Copynumber: 2.3 Consensus size: 27
4003411 ACATAAATAC
4003421 TAAAAATATATTATTTTATATATTTAA
1 TAAAAATATATTATTTTATATATTTAA
**
4003448 TATTAATATATTATTTTAGTATCATTTTAA
1 TAAAAATATATTATTTTA-TAT-A-TTTAA
4003478 TAAAAATAT
1 TAAAAATAT
4003487 TAATTATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 16 0.50
28 3 0.09
29 1 0.03
30 12 0.38
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (27 bp):
TAAAAATATATTATTTTATATATTTAA
Found at i:4003578 original size:20 final size:20
Alignment explanation
Indices: 4003541--4003579 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
4003531 TATTTTTATT
*
4003541 TTAATAATATATATACATTA
1 TTAATAATATATAAACATTA
4003561 TTAA-AATATATCAAACATT
1 TTAATAATATAT-AAACATT
4003580 TGGTGATCGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
TTAATAATATATAAACATTA
Found at i:4003630 original size:29 final size:30
Alignment explanation
Indices: 4003595--4003668 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 30
4003585 ATCGCTTTCT
*
4003595 TTTTCATTAAACATTAGGCGCTCTCT-ATA
1 TTTTCATTAAACATTAGGCGCTCTCTCACA
* * * * * *
4003624 TTTTCATCAAATATTAGGTGTTCTCTCCCC
1 TTTTCATTAAACATTAGGCGCTCTCTCACA
4003654 TTTTCATTAAACATT
1 TTTTCATTAAACATT
4003669 GAATGTTCTC
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
29 22 0.63
30 13 0.37
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.45
Consensus pattern (30 bp):
TTTTCATTAAACATTAGGCGCTCTCTCACA
Found at i:4003845 original size:29 final size:29
Alignment explanation
Indices: 4003804--4003886 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 29
4003794 TATTCTACCC
* * * *
4003804 TTTTCATAAAACATTGGGTGCTCTCTTTCT
1 TTTTCAT-CAACATTGGTTGCTCTCTTCCG
* *
4003834 TTTTCATCAACATTAGTTACTCTCTTCCG
1 TTTTCATCAACATTGGTTGCTCTCTTCCG
*
4003863 TTTTCATCAAACATCGGTTGCTCT
1 TTTTCATC-AACATTGGTTGCTCT
4003887 AACATTGGTT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
29 24 0.56
30 19 0.44
ACGTcount: A:0.20, C:0.24, G:0.11, T:0.45
Consensus pattern (29 bp):
TTTTCATCAACATTGGTTGCTCTCTTCCG
Found at i:4003965 original size:183 final size:183
Alignment explanation
Indices: 4003685--4004066 Score: 474
Period size: 190 Copynumber: 2.1 Consensus size: 183
4003675 TCTCTTTCCA
* * *
4003685 TTTCATC-AACATCGTTGCTCTAACATTGGTTCTCTCTTCACATTTTTCAAGCACTGGTTGTTCT
1 TTTCATCAAACATCGTTGCTCTAACATTGGTTCTCTCTTCACATTTATCAAACACTAGTTGTTCT
4003749 CTTCCATTTCGTCAAACATTTGTGCTCTATTACCTTTTCGACAA-A-TAT-TCTACCCTTTTCAT
66 CTTCCATTTCGTCAAACATTTGTGC-CTATTACCTTTTCGACAATATTATCTCTACCCTTTTCAT
* * * * * * *
4003811 AAAACATTGGGTGCTCTCTTTC-TTTTTCATC-AACATTAGTTACTCTCTTCCGT
130 AAAACATTAGGTACTCTATTCCATTTTT-ATCAAACACTAGGTACTCTCTTACGT
4003864 TTTCATCAAACATCGGTTGCTCTAACATTGGTTTTCTCTCTTCACATTTCATCAAACACTAGTTG
1 TTTCATCAAACATC-GTTGCTCTAACATTGG--TTCTCTCTTCACATTT-ATCAAACACTAGTTG
* *
4003929 TTCTCTTCCATTTTCGTC-AACATTTTGTG-CTATTACCTTTTCGCCAATATTGTGTGCTCTACC
62 TTCTCTTCCA-TTTCGTCAAACA-TTTGTGCCTATTACCTTTTCGACAATA-T-TAT-CTCTACC
* * *
4003992 CTTTTCATAAAACATTAGTTACTCTATTCCATTTTTATCAAACACTAGGTGCTCTCTTACTT
122 CTTTTCATAAAACATTAGGTACTCTATTCCATTTTTATCAAACACTAGGTACTCTCTTACGT
4004054 TTTCATCAAACAT
1 TTTCATCAAACAT
4004067 TGATTGCGCT
Statistics
Matches: 173, Mismatches: 15, Indels: 19
0.84 0.07 0.09
Matches are distributed among these distances:
179 7 0.04
180 6 0.03
181 16 0.09
183 33 0.19
184 27 0.16
185 13 0.08
187 2 0.01
189 34 0.20
190 35 0.20
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.43
Consensus pattern (183 bp):
TTTCATCAAACATCGTTGCTCTAACATTGGTTCTCTCTTCACATTTATCAAACACTAGTTGTTCT
CTTCCATTTCGTCAAACATTTGTGCCTATTACCTTTTCGACAATATTATCTCTACCCTTTTCATA
AAACATTAGGTACTCTATTCCATTTTTATCAAACACTAGGTACTCTCTTACGT
Found at i:4004083 original size:29 final size:29
Alignment explanation
Indices: 4004044--4004128 Score: 89
Period size: 32 Copynumber: 2.8 Consensus size: 29
4004034 CACTAGGTGC
4004044 TCTCTTACTTTTTCATCAAACATTGATTGCG
1 TCTCTT-CTTTTTCATCAAACATTGATTG-G
* ** *
4004075 CTCTTCTTTTTTTTCATCAAACACAGGTTGG
1 -TC-TCTTCTTTTTCATCAAACATTGATTGG
*
4004106 TCTCTTCTTTTCCATCAAACATT
1 TCTCTTCTTTTTCATCAAACATT
4004129 AGTTGTTATC
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
29 17 0.39
30 2 0.05
31 1 0.02
32 20 0.45
33 4 0.09
ACGTcount: A:0.21, C:0.25, G:0.08, T:0.46
Consensus pattern (29 bp):
TCTCTTCTTTTTCATCAAACATTGATTGG
Found at i:4004269 original size:58 final size:57
Alignment explanation
Indices: 4004149--4004274 Score: 139
Period size: 58 Copynumber: 2.2 Consensus size: 57
4004139 TTCCCATTGC
* * *
4004149 ATCAAACACTAGTTGCTCTCTTTCCTTTTAATCAAACTGGTTGCTCTATTCCTTTTTC
1 ATCAAACACTAGTTGCTCTCTTTCATATTAATCAAACTGGTTGCTC-ATTCCTTTTTA
* * * *
4004207 ATCAAACACTGGTTGCTTTCTTTCATATTCATCAAACATTGTGTGCTC-TT-CTATTTTA
1 ATCAAACACTAGTTGCTCTCTTTCATATTAATCAAAC-TGGT-TGCTCATTCCT-TTTTA
4004265 ATCAAACACT
1 ATCAAACACT
4004275 CATTAATGTC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
57 2 0.03
58 48 0.83
59 3 0.05
60 5 0.09
ACGTcount: A:0.25, C:0.24, G:0.09, T:0.43
Consensus pattern (57 bp):
ATCAAACACTAGTTGCTCTCTTTCATATTAATCAAACTGGTTGCTCATTCCTTTTTA
Found at i:4004429 original size:29 final size:29
Alignment explanation
Indices: 4004374--4004436 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
4004364 ACCATCCTCC
* *
4004374 CTTTTTATCAAACTTGCGTGCTCACTTCT
1 CTTTTTATCAAACTTGCGTACTAACTTCT
*
4004403 CTTTTTATCAAACTTG-GTTATTAACTTCT
1 CTTTTTATCAAACTTGCG-TACTAACTTCT
4004432 CTTTT
1 CTTTT
4004437 CAACATTGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.19, C:0.22, G:0.08, T:0.51
Consensus pattern (29 bp):
CTTTTTATCAAACTTGCGTACTAACTTCT
Found at i:4004792 original size:58 final size:58
Alignment explanation
Indices: 4004488--4004793 Score: 171
Period size: 58 Copynumber: 5.2 Consensus size: 58
4004478 CTCTCTTTTT
* * * * ** *
4004488 CTTTTTATCAAACATTGGTTTGTTCTCTTCCCTTTTCAACAAACAAT-GTATGCTCTCTTC
1 CTTTTCATCAAACACTGG-TT-ATCTCTTCCCTTTTTATTAAACACTAGT-TGCTCTCTTC
* * * * * * * * * ** * *
4004548 CCTTTCATCAAACA-TTGATATTTGTTCCATGTTCATCAAATTCTAGTAGCTCTTTTCC
1 CTTTTCATCAAACACTGGTTATCTCTTCCCTTTTTATTAAACACTAGTTGCTCTCTT-C
* * * * *
4004606 CTTTTCATC-AA-ACGGGTTA-CT-TCTCCCTTTTTATCAAACACT-GCATGTTTTCTTCC
1 CTTTTCATCAAACACTGGTTATCTCT-TCCCTTTTTATTAAACACTAG-TTGCTCTCTT-C
* *
4004662 CTTTTCATCAAACATTGGTTACTCTCTTCCCTTTTTATTAAACACTGGTTGCTCTCTTC
1 CTTTTCATCAAACACTGGTTA-TCTCTTCCCTTTTTATTAAACACTAGTTGCTCTCTTC
*** *
4004721 CGTTTTC-TACAAACACTGGTT-TCTCTTTTTTTTTTATTAAACATTAGTTGCTCTCTTC
1 C-TTTTCAT-CAAACACTGGTTATCTCTTCCCTTTTTATTAAACACTAGTTGCTCTCTTC
4004779 CTTTCTCATCAAACA
1 CTTT-TCATCAAACA
4004794 TTATGTGTTC
Statistics
Matches: 189, Mismatches: 42, Indels: 32
0.72 0.16 0.12
Matches are distributed among these distances:
55 2 0.01
56 32 0.17
57 33 0.17
58 59 0.31
59 6 0.03
60 55 0.29
61 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.08, T:0.45
Consensus pattern (58 bp):
CTTTTCATCAAACACTGGTTATCTCTTCCCTTTTTATTAAACACTAGTTGCTCTCTTC
Found at i:4004793 original size:30 final size:29
Alignment explanation
Indices: 4003991--4005033 Score: 246
Period size: 30 Copynumber: 35.6 Consensus size: 29
4003981 TGTGCTCTAC
* * * *
4003991 CCTTTTCATAAAACATTAGTTACTCTATT
1 CCTTTTCATCAAACATTGGTTGCTCTCTT
* *
4004020 CCATTTTTATCAAACACTAGG-TGCTCTCTT
1 CC-TTTTCATCAAACA-TTGGTTGCTCTCTT
* *
4004050 ACTTTTTCATCAAACATTGATTGCGCTCTTCTT
1 -CCTTTTCATCAAACATTGGTT--GCTC-TCTT
** ** *
4004083 TTTTTTCATCAAACACAGGTTGGTCTCTT
1 CCTTTTCATCAAACATTGGTTGCTCTCTT
* * *
4004112 -CTTTTCCATCAAACATTAGTTGTTATCTT
1 CCTTTT-CATCAAACATTGGTTGCTCTCTT
* * * *
4004141 CCCATTGCATCAAACACTAGTTGCTCTCTTT
1 -CCTTTTCATCAAACATTGGTTGCTCTC-TT
* *
4004172 CCTTTTAATCAAAC--TGGTTGCTCTATT
1 CCTTTTCATCAAACATTGGTTGCTCTCTT
* *
4004199 CCTTTTTCATCAAACACTGGTTGCTTTCTTT
1 CC-TTTTCATCAAACATTGGTTGCTCTC-TT
* *
4004230 CATATTCATCAAACATT-G-TG-TGCTCTT
1 CCTTTTCATCAAACATTGGTTGCT-CTCTT
* * * ** ** *
4004257 CTATTTTAATCAAACACTCATTAATGTCTT
1 C-CTTTTCATCAAACATTGGTTGCTCTCTT
* * * *
4004287 CCATTTCATTAAACAATGGTTGTTCTCTTTT
1 CCTTTTCATCAAACATTGGTTG--CTCTCTT
** * *
4004318 ATTTTTCATC-AATATTGCG-CGCTCT-TT
1 CCTTTTCATCAAACATTG-GTTGCTCTCTT
* * * *
4004345 CCTTTTTAAT-AAAAATT--TTAC-CATCCTC
1 CC-TTTTCATCAAACATTGGTTGCTC-T-CTT
* *
4004373 CCTTTTTATCAAAC-TTGCG-TGCTCACTT
1 CCTTTTCATCAAACATTG-GTTGCTCTCTT
* ** **
4004401 CTCTTTTTATCAAAC-TTGGTTATTAACTT
1 C-CTTTTCATCAAACATTGGTTGCTCTCTT
4004430 -CTCTTT--TC-AACATT-GTGTGCTCTCTTT
1 CCT-TTTCATCAAACATTGGT-TGCTCTC-TT
* * *
4004457 TCTTTT--TCCAAACACTT-ATTTCTCTCTTTT
1 CCTTTTCAT-CAAACA-TTGGTTGCTCTC--TT
* * *
4004487 TCTTTTTATCAAACATTGGTTTGTTCTCTT
1 CCTTTTCATCAAACATTGG-TTGCTCTCTT
* *
4004517 CCCTTTTCAACAAACAAT-GTATGCTCTCTT
1 -CCTTTTCATCAAACATTGGT-TGCTCTCTT
* * *
4004547 CCCTTTCATCAAACATTGATAT--T-TGTT
1 CCTTTTCATCAAACATTGGT-TGCTCTCTT
* * * * *
4004574 CCATGTTCATCAAA-TTCTAGTAGCTCTTTT
1 CC-TTTTCATCAAACAT-TGGTTGCTCTCTT
* * *
4004604 CCCTTTTCATCAAAC--GGGTTACT-TCTC
1 -CCTTTTCATCAAACATTGGTTGCTCTCTT
* * ** * *
4004631 CCTTTTTATCAAACACTGCATGTTTTCTT
1 CCTTTTCATCAAACATTGGTTGCTCTCTT
*
4004660 CCCTTTTCATCAAACATTGGTTACTCTCTT
1 -CCTTTTCATCAAACATTGGTTGCTCTCTT
* * *
4004690 CCCTTTTTATTAAACACTGGTTGCTCTCTT
1 -CCTTTTCATCAAACATTGGTTGCTCTCTT
* *
4004720 CCGTTTTC-TACAAACACTGGTTTCTCT-TT
1 CC-TTTTCAT-CAAACATTGGTTGCTCTCTT
** * * *
4004749 TTTTTTTATTAAACATTAGTTGCTCTCTT
1 CCTTTTCATCAAACATTGGTTGCTCTCTT
* * *
4004778 CCTTTCTCATCAAACATT-ATGTGTTCTCGT
1 CCTTT-TCATCAAACATTGGT-TGCTCTCTT
* * ** *
4004808 CCGTTTTCATCAAATACTGGTTATTCTCCTC
1 CC-TTTTCATCAAACATTGGTTGCTCT-CTT
* * *** * * *
4004839 CCTTTTAATGAAATGGTAGTTGTTCTATT
1 CCTTTTCATCAAACATTGGTTGCTCTCTT
* *
4004868 CCCTTTCGATCAAACACTGCG-TGCTCTCTTT
1 CCTTTTC-ATCAAACATTG-GTTGCTCTC-TT
* *
4004899 CCTTTTTCATCAAAAAATT-GTTGCTCTATT
1 CC-TTTTCATC-AAACATTGGTTGCTCTCTT
* *
4004929 TCTTTTCATC-AACACTACGGTT-CTCT-TT
1 CCTTTTCATCAAACA-T-TGGTTGCTCTCTT
* *
4004957 CCTTTTCATCAAACGA-TGGTTTCTCTATTT
1 CCTTTTCATCAAAC-ATTGGTTGCTCT-CTT
** *
4004987 CCCATTCATCAAACATTCGG-TGCTCTTTT
1 CCTTTTCATCAAACATT-GGTTGCTCTCTT
*
4005016 CCCTTTTCATCATACATT
1 -CCTTTTCATCAAACATT
4005034 TTTTTTAATT
Statistics
Matches: 742, Mismatches: 183, Indels: 177
0.67 0.17 0.16
Matches are distributed among these distances:
25 6 0.01
26 22 0.03
27 41 0.06
28 124 0.17
29 130 0.18
30 311 0.42
31 67 0.09
32 37 0.05
33 4 0.01
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.45
Consensus pattern (29 bp):
CCTTTTCATCAAACATTGGTTGCTCTCTT
Found at i:4004983 original size:57 final size:58
Alignment explanation
Indices: 4004857--4005027 Score: 150
Period size: 58 Copynumber: 2.9 Consensus size: 58
4004847 TGAAATGGTA
* * * * *
4004857 GTTGTTCTA-TTCCCTTTCGATCAAACACTGCGTGCTCTCTTTCCTTTTTCATCAAAAAATT
1 GTTGCTCTATTTCCCATTC-ATCAAACA-TACG-GTTCTCTTTCC-TTTTCATCAAAAAATG
** **
4004918 GTTGCTCTATTT-CTTTTCATC-AACACTACGGTTCTCTTTCCTTTTCATCAAACGATG
1 GTTGCTCTATTTCCCATTCATCAAACA-TACGGTTCTCTTTCCTTTTCATCAAAAAATG
* * *
4004975 GTTTCTCTATTTCCCATTCATCAAACATTCGGTGCTCTTTTCCCTTTTCATCA
1 GTTGCTCTATTTCCCATTCATCAAACATACGGTTCTC-TTT-CCTTTTCATCA
4005028 TACATTTTTT
Statistics
Matches: 93, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
57 24 0.26
58 25 0.27
59 15 0.16
60 14 0.15
61 13 0.14
62 2 0.02
ACGTcount: A:0.19, C:0.27, G:0.09, T:0.44
Consensus pattern (58 bp):
GTTGCTCTATTTCCCATTCATCAAACATACGGTTCTCTTTCCTTTTCATCAAAAAATG
Found at i:4006273 original size:30 final size:30
Alignment explanation
Indices: 4006232--4006524 Score: 188
Period size: 30 Copynumber: 9.8 Consensus size: 30
4006222 CTGCGCTTTC
*
4006232 TTCCGTTTTCATCAAACTA-TGGTTGCAATCT
1 TTCC-TTTTCATCAAAC-ACTGGTTGCACTCT
* *
4006263 TTCCTTTTCATCAAACATTGAG-TGCTCTC-
1 TTCCTTTTCATCAAACACTG-GTTGCACTCT
4006292 TTCCTTTTTCATCAAACACTGGTTG-ATCTCT
1 TTCC-TTTTCATCAAACACTGGTTGCA-CTCT
* * *
4006323 TTCATTTTCATCAAACACTGGTTACTCTCT
1 TTCCTTTTCATCAAACACTGGTTGCACTCT
* * * *
4006353 TCCCTTTTCATCAAATACTAGTT--ATTCT
1 TTCCTTTTCATCAAACACTGGTTGCACTCT
* ***
4006381 ATTCCCTTTTCATGAAACACTGGTTGTTTTCT
1 -TT-CCTTTTCATCAAACACTGGTTGCACTCT
* * *
4006413 TCCCTTTTGATCAAACACTGCG-TGCTCTCT
1 TTCCTTTTCATCAAACACTG-GTTGCACTCT
* * * * *
4006443 TCCCTTCTCATCAAACAATGGTTGCTCTAT
1 TTCCTTTTCATCAAACACTGGTTGCACTCT
* * * ** *
4006473 TTTCTTTTTATCAAACAATGCAT-CTCTCT
1 TTCCTTTTCATCAAACACTGGTTGCACTCT
* *
4006502 TTCATTTTCATTAAACACTGGTT
1 TTCCTTTTCATCAAACACTGGTT
4006525 CTGCAAAAGA
Statistics
Matches: 208, Mismatches: 41, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
28 3 0.01
29 29 0.14
30 162 0.78
31 10 0.05
32 4 0.02
ACGTcount: A:0.22, C:0.26, G:0.09, T:0.43
Consensus pattern (30 bp):
TTCCTTTTCATCAAACACTGGTTGCACTCT
Found at i:4006301 original size:60 final size:60
Alignment explanation
Indices: 4006230--4006524 Score: 208
Period size: 60 Copynumber: 4.9 Consensus size: 60
4006220 CACTGCGCTT
* * * *
4006230 TCTTCCGTTTTCATCAAACTA-TGGTTGCA-ATCTTTCCTTTTCATCAAACATTGAG-TGCTC
1 TCTTCCCTTTTCATCAAAC-ACTGGTTG-ATATCTTTCATTTTCATCAAACACTG-GTTACTC
* *
4006290 TCTTCCTTTTTCATCAAACACTGGTTGATCTCTTTCATTTTCATCAAACACTGGTTACTC
1 TCTTCCCTTTTCATCAAACACTGGTTGATATCTTTCATTTTCATCAAACACTGGTTACTC
* * * * ** *
4006350 TCTTCCCTTTTCATCAAATACTAGTT-AT-TCTATTCCCTTTTCATGAAACACTGGTTGTTT
1 TCTTCCCTTTTCATCAAACACTGGTTGATATCT-TT-CATTTTCATCAAACACTGGTTACTC
* * * * * * * *
4006410 TCTTCCCTTTTGATCAAACACTGCG-TGCTCTCTTCCCTTCTCATCAAACAATGGTTGCTC
1 TCTTCCCTTTTCATCAAACACTG-GTTGATATCTTTCATTTTCATCAAACACTGGTTACTC
* ** * * ** * * *
4006470 TATTTTCTTTTTATCAAACAATGCAT-CTCTCTTTCATTTTCATTAAACACTGGTT
1 TCTTCCCTTTTCATCAAACACTGGTTGATATCTTTCATTTTCATCAAACACTGGTT
4006525 CTGCAAAAGA
Statistics
Matches: 192, Mismatches: 34, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
58 3 0.02
59 31 0.16
60 152 0.79
61 3 0.02
62 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.09, T:0.43
Consensus pattern (60 bp):
TCTTCCCTTTTCATCAAACACTGGTTGATATCTTTCATTTTCATCAAACACTGGTTACTC
Found at i:4006391 original size:90 final size:90
Alignment explanation
Indices: 4006237--4006524 Score: 251
Period size: 90 Copynumber: 3.2 Consensus size: 90
4006227 CTTTCTTCCG
* ** * * * * * *
4006237 TTTTCATCAAACTA-TGGTTGCAATCTTTCCTTTTCATCAAACATTGAG-TGCTCTCTTCCTTTT
1 TTTTCATCAAAC-ACTGGTTACTCTCTTCCCTTCTCATCAAACAAT-AGTTACTCTATTCCCTTT
4006300 TCATCAAACACTGGTTGATCTCTTTCA
64 TCATCAAACACTGGTTGATCTCTTTCA
* * * *
4006327 TTTTCATCAAACACTGGTTACTCTCTTCCCTTTTCATCAAATACTAGTTATTCTATTCCCTTTTC
1 TTTTCATCAAACACTGGTTACTCTCTTCCCTTCTCATCAAACAATAGTTACTCTATTCCCTTTTC
* * * * *
4006392 ATGAAACACTGGTTGTTTTCTTCCC
66 ATCAAACACTGGTTGATCTCTTTCA
* * * * **
4006417 TTTTGATCAAACACTGCG-TGCTCTCTTCCCTTCTCATCAAACAATGGTTGCTCTATTTTCTTTT
1 TTTTCATCAAACACTG-GTTACTCTCTTCCCTTCTCATCAAACAATAGTTACTCTATTCCCTTTT
* * ** *
4006481 TATCAAACAATGCAT-CTCTCTTTCA
65 CATCAAACACTGGTTGATCTCTTTCA
*
4006506 TTTTCATTAAACACTGGTT
1 TTTTCATCAAACACTGGTT
4006525 CTGCAAAAGA
Statistics
Matches: 158, Mismatches: 36, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
88 1 0.01
89 24 0.15
90 132 0.84
91 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.43
Consensus pattern (90 bp):
TTTTCATCAAACACTGGTTACTCTCTTCCCTTCTCATCAAACAATAGTTACTCTATTCCCTTTTC
ATCAAACACTGGTTGATCTCTTTCA
Found at i:4007118 original size:30 final size:30
Alignment explanation
Indices: 4007084--4007187 Score: 111
Period size: 30 Copynumber: 3.5 Consensus size: 30
4007074 CTTGTTTTCT
* *
4007084 TTTTCATCAAACATTAGGTGCTCTCTTCCA
1 TTTTCATCAAACATTAGGTGTTCTCTTCCC
* * * *
4007114 TTTTCATCAAATATTAGGCGTTTTCTCCCC
1 TTTTCATCAAACATTAGGTGTTCTCTTCCC
* *
4007144 TTTTCATTAAACATT-GCATGTTCTCTTCCC
1 TTTTCATCAAACATTAG-GTGTTCTCTTCCC
*
4007174 TTTTTATCAAACAT
1 TTTTCATCAAACAT
4007188 CGGTTGTTCT
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 58 0.98
ACGTcount: A:0.23, C:0.25, G:0.08, T:0.44
Consensus pattern (30 bp):
TTTTCATCAAACATTAGGTGTTCTCTTCCC
Found at i:4007341 original size:30 final size:30
Alignment explanation
Indices: 4007305--4007912 Score: 174
Period size: 30 Copynumber: 20.4 Consensus size: 30
4007295 TGCTCTACCC
*
4007305 TTTTCATAAAACATTGGGTTCTCTCTTTCT
1 TTTTCATCAAACATTGGGTTCTCTCTTTCT
* * *
4007335 TTTTCATCAAACATT-AGTTACTCTATTTCA
1 TTTTCATCAAACATTGGGTT-CTCTCTTTCT
* * *
4007365 TTTTCATCAAACACTGGGTGCTCTCTTACT
1 TTTTCATCAAACATTGGGTTCTCTCTTTCT
* * *
4007395 TTTTCATCAAACATT--GATCGCGCTCTTCTT
1 TTTTCATCAAACATTGGGTTCTCTCT-TTC-T
** *
4007425 TTTTCATCAAACA-CAGGTTGGTCTC-TTCT
1 TTTTCATCAAACATTGGGTT-CTCTCTTTCT
* * * * * *
4007454 CTTTTCATCAAACACT-AGTTGTTATCTTCCC
1 -TTTTCATCAAACATTGGGTT-CTCTCTTTCT
* * * *
4007485 ATTGCATCAAACACT-GGTTGCTCTCTTTCC
1 TTTTCATCAAACATTGGGTT-CTCTCTTTCT
* * * *
4007515 TTTTAATCAAACACT-GGTTGCTCTATTCCT
1 TTTTCATCAAACATTGGGTT-CTCTCTTTCT
* * *
4007545 TTTTCATCAAACACT-GGTTGCTTTCTTTCA
1 TTTTCATCAAACATTGGGTT-CTCTCTTTCT
* * *
4007575 TATTCATCAAACATTGTGTGCTCTC-TTCT
1 TTTTCATCAAACATTGGGTTCTCTCTTTCT
* * ** * * * *
4007604 ATTTTAATCAAACACT-CATTAATATCTTCCA
1 -TTTTCATCAAACATTGGGTT-CTCTCTTTCT
* *
4007635 TTTTCATCAAACAAT-GGTTGT-TCTCTTCT
1 TTTTCATCAAACATTGGGTTCTCTCT-TTCT
* * *
4007664 CTTTTCATCAAATATTGCG-T-GCTCTTTCAT
1 -TTTTCATCAAACATTGGGTTCTCTCTTTC-T
** * *
4007694 TTTTCATCAAACA-CCGATTGCTCT-TTTCCC
1 TTTTCATCAAACATTGGGTT-CTCTCTTT-CT
* * * **
4007724 TTTTCAT-AAAAATT-TGTTACCCTCCTCCCT
1 TTTTCATCAAACATTGGGTT-CTCT-CTTTCT
* * * * *
4007754 TTTT-ATCAAGCAATGCG-TCTCACTTCCCT
1 TTTTCATCAAACATTGGGTTCTCTCTT-TCT
*
4007783 TTTT-ATCAAACATT-GGTTAT-TAAC-TTCT
1 TTTTCATCAAACATTGGGTTCTCT--CTTTCT
* * *
4007811 CTTTTCATCAAACATTGCGTGCTCTCCTTCT
1 -TTTTCATCAAACATTGGGTTCTCTCTTTCT
* * *
4007842 TTTT-ATCAAACATTGTGTGCTCTCCTTCT
1 TTTTCATCAAACATTGGGTTCTCTCTTTCT
* * *
4007871 TTTT-ATCAAACATT-GGTTGTTCTCTTCCC
1 TTTTCATCAAACATTGGGTT-CTCTCTTTCT
*
4007900 TTTTCAACAAACA
1 TTTTCATCAAACA
4007913 ATGTATGCTA
Statistics
Matches: 428, Mismatches: 111, Indels: 78
0.69 0.18 0.13
Matches are distributed among these distances:
28 15 0.04
29 112 0.26
30 275 0.64
31 23 0.05
32 3 0.01
ACGTcount: A:0.23, C:0.25, G:0.09, T:0.44
Consensus pattern (30 bp):
TTTTCATCAAACATTGGGTTCTCTCTTTCT
Found at i:4007377 original size:60 final size:60
Alignment explanation
Indices: 4007305--4008463 Score: 276
Period size: 60 Copynumber: 19.8 Consensus size: 60
4007295 TGCTCTACCC
* * *
4007305 TTTTCATAAAACATTGGGTT-CTCTCTTTCTTTTTCATCAAACATTAGTTACTCTATTTCA
1 TTTTCATCAAACACT-GGTTGCTCTCTTTCTTTTTCATCAAACATTAGTTGCTCTATTTCA
* * * * * *
4007365 TTTTCATCAAACACTGGGTGCTCTCTTACTTTTTCATCAAACATT-GATCGCGCT-CTTCTT
1 TTTTCATCAAACACTGGTTGCTCTCTTTCTTTTTCATCAAACATTAG-TTGCTCTATTTC-A
* * *
4007425 TTTTCATCAAACACAGGTTGGTCTC-TTCTCTTTTCATCAAACACTAGTTG-T-TATCTTCCCA
1 TTTTCATCAAACACTGGTTGCTCTCTTTCT-TTTTCATCAAACATTAGTTGCTCTAT-TT--CA
* * * * * * *
4007486 -TTGCATCAAACACTGGTTGCTCTCTTTCCTTTTAATCAAACACTGGTTGCTCTATTCCT
1 TTTTCATCAAACACTGGTTGCTCTCTTTCTTTTTCATCAAACATTAGTTGCTCTATTTCA
* * * *
4007545 TTTTCATCAAACACTGGTTGCTTTCTTTCATATTCATCAAACATT-GTGTGCTCT-CTTCTA
1 TTTTCATCAAACACTGGTTGCTCTCTTTCTTTTTCATCAAACATTAGT-TGCTCTATTTC-A
* ** ** * * * * * * *
4007605 TTTTAATCAAACACTCATTAATATCTTCCATTTTCATCAAACAATGGTTGTTCTCTTCTC-
1 TTTTCATCAAACACTGGTTGCTCTCTTTCTTTTTCATCAAACATTAGTTGCTCTATT-TCA
* * ** *
4007665 TTTTCATCAAATATTGCG-TG--CTCTTTCATTTTTCATCAAACA-CCGATTGCTCT-TTTCCC
1 TTTTCATCAAACACTG-GTTGCTCTCTTTC-TTTTTCATCAAACATTAG-TTGCTCTATTT-CA
* * * * * ** * * *
4007724 TTTTCAT-AAAAATTTGTTACCCTCCTCCCTTTTT-ATCAAGCA--A--TGCGTCTCACTTCCC
1 TTTTCATCAAACACTGGTTGCTCT-CTTTCTTTTTCATCAAACATTAGTTGC-TCT-A-TTTCA
* * ** ** * **
4007782 TTTTTATCAAACATTGGTTATTAAC-TTCTCTTTTCATCAAACATT-GCGTGCTCTCCTTC-
1 TTTTCATCAAACACTGGTTGCTCTCTTTCT-TTTTCATCAAACATTAG-TTGCTCTATTTCA
* * * * * * * *
4007841 TTTTTATCAAACA-TTGTGTGCTCTCCTTCTTTTT-ATCAAACATTGGTTGTTCTCTTCCC
1 TTTTCATCAAACACTGGT-TGCTCTCTTTCTTTTTCATCAAACATTAGTTGCTCTATTTCA
* * * * * * *
4007900 TTTTCAACAAACAAT-GTATGCTATC---C-CTTTCATCAAACATT-GAT-AT-T-TGTTCC
1 TTTTCATCAAACACTGGT-TGCTCTCTTTCTTTTTCATCAAACATTAGTTGCTCTAT-TTCA
* * * * * * * * * *
4007953 TGTTAATCAAATACTGATAGCTCT-TTTCTCTTTTCATC--ACATTGGTTACT-TCTTCCC
1 TTTTCATCAAACACTGGTTGCTCTCTTTCT-TTTTCATCAAACATTAGTTGCTCTATTTCA
* * * ** * *
4008010 TTTT-ATCAAACAC-----G--C-ATGTC--TTTCATCAAAC-TATGGTTGCAGTTTTTCC
1 TTTTCATCAAACACTGGTTGCTCTCTTTCTTTTTCATCAAACAT-TAGTTGCTCTATTTCA
* * * * * * ** * * * * *
4008059 TTTTCATCAATCATTGGGTGCTATATTCCAATTTCATCAAACATTGGTTACTCTCTTCCC
1 TTTTCATCAAACACTGGTTGCTCTCTTTCTTTTTCATCAAACATTAGTTGCTCTATTTCA
* * * * * *
4008119 TTTTTATTAAACACTGGTTGCTCTC-TTCTGTTTTC-TACAAACACTAGTTACTCTCTTTCC
1 TTTTCATCAAACACTGGTTGCTCTCTTTCT-TTTTCAT-CAAACATTAGTTGCTCTATTTCA
* * * * * * * *
4008179 TTTTCATTAAACATTGGTTGCTCTCTTCCTTTCTCATCAAACATTA-TGTGTTCTCTTCCG
1 TTTTCATCAAACACTGGTTGCTCTCTTTCTTTTTCATCAAACATTAGT-TGCTCTATTTCA
* ** * * * * * **** * *
4008239 TTTTCATCAAATACTGGTTATTCTCCTCCCTTTTAATGAAATGGAAGTTGCTCT-CTTCC
1 TTTTCATCAAACACTGGTTGCTCTCTTTCTTTTTCATCAAACATTAGTTGCTCTATTTCA
* * *
4008298 CTTTCGATCAAACACTGCG-TGCTCTCTTTCCTTTTTCATCAAAAAATT-GTTGCTCTATTTCT
1 TTTTC-ATCAAACACTG-GTTGCTCTCTTT-CTTTTTCATC-AAACATTAGTTGCTCTATTTCA
* * * * * * * *
4008360 TTTTCATCAAACACTACG-TGTTCTCTTTCCTTTTCATCAAACAATGGTTTCTTTATTTCC
1 TTTTCATCAAACACT-GGTTGCTCTCTTTCTTTTTCATCAAACATTAGTTGCTCTATTTCA
* * * * *
4008420 TATTCATCAAACATTGGGTGCTCTCTTCCTTTTT-ATCATACATT
1 TTTTCATCAAACACTGGTTGCTCTCTTTCTTTTTCATCAAACATT
4008464 TTTTAATTTA
Statistics
Matches: 816, Mismatches: 197, Indels: 173
0.69 0.17 0.15
Matches are distributed among these distances:
46 7 0.01
47 1 0.00
48 8 0.01
49 13 0.02
50 7 0.01
51 1 0.00
52 1 0.00
53 18 0.02
54 2 0.00
55 15 0.02
56 24 0.03
57 19 0.02
58 55 0.07
59 131 0.16
60 438 0.54
61 54 0.07
62 19 0.02
63 3 0.00
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.44
Consensus pattern (60 bp):
TTTTCATCAAACACTGGTTGCTCTCTTTCTTTTTCATCAAACATTAGTTGCTCTATTTCA
Found at i:4007421 original size:90 final size:88
Alignment explanation
Indices: 4007327--4007706 Score: 297
Period size: 90 Copynumber: 4.2 Consensus size: 88
4007317 ATTGGGTTCT
* * *
4007327 CTCTTTCTTTTTCATCAAACATTAGTTACTCTATTTCATTTTCATCAAACACTGGGTGCTCTCTT
1 CTCTTTCTTTTTCATCAAACATCAGTTACTCTATTCCATTTTCATCAAACACTGGTTGCTCTCTT
4007392 ACTTTTTCATCAAACATTGATCGCG
66 -CTTTTTCATCAAACATTG-TCGCG
** * * * *
4007417 CTC-TTCTTTTTTCATCAAACA-CAGGTTGGTCTCTTCTC-TTTTCATCAAACACTAGTTGTTAT
1 CTCTTTC-TTTTTCATCAAACATCA-GTTACTCTATTC-CATTTTCATCAAACACTGGTTGCTCT
** * * * *
4007479 CTTCCCATTGCATCAAACACTGGTTGCT
63 CTT-CTTTTTCATCAAACA-TTGTCGCG
* * * * * *
4007507 CTCTTTCCTTTTAATCAAACA-CTGGTTGCTCTATTCCTTTTTCATCAAACACTGGTTGCTTTCT
1 CTCTTTCTTTTTCATCAAACATC-AGTTACTCTATTCCATTTTCATCAAACACTGGTTGCTCTC-
* * *
4007571 TTCATATTCATCAAACATTGT-GTG
64 TTCTTTTTCATCAAACATTGTCGCG
* * * * * *
4007595 CTCTCTTCTATTTTAATCAAACACTCA-TTAATATCTTCCATTTTCATCAAACAATGGTTGTTCT
1 CTCT-TTCT-TTTTCATCAAACA-TCAGTTACTCTATTCCATTTTCATCAAACACTGGTTGCTCT
* *
4007659 CTTCTCTTTTCATCAAATATTG-CGTG
63 CTTCT-TTTTCATCAAACATTGTCGCG
4007685 CTCTTTCATTTTTCATCAAACA
1 CTCTTTC-TTTTTCATCAAACA
4007707 CCGATTGCTC
Statistics
Matches: 230, Mismatches: 45, Indels: 31
0.75 0.15 0.10
Matches are distributed among these distances:
88 5 0.02
89 29 0.13
90 187 0.81
91 8 0.03
92 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.09, T:0.43
Consensus pattern (88 bp):
CTCTTTCTTTTTCATCAAACATCAGTTACTCTATTCCATTTTCATCAAACACTGGTTGCTCTCTT
CTTTTTCATCAAACATTGTCGCG
Found at i:4007815 original size:29 final size:29
Alignment explanation
Indices: 4007810--4007885 Score: 134
Period size: 29 Copynumber: 2.6 Consensus size: 29
4007800 TATTAACTTC
*
4007810 TCTTTTCATCAAACATTGCGTGCTCTCCT
1 TCTTTTTATCAAACATTGCGTGCTCTCCT
*
4007839 TCTTTTTATCAAACATTGTGTGCTCTCCT
1 TCTTTTTATCAAACATTGCGTGCTCTCCT
4007868 TCTTTTTATCAAACATTG
1 TCTTTTTATCAAACATTG
4007886 GTTGTTCTCT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.20, C:0.25, G:0.09, T:0.46
Consensus pattern (29 bp):
TCTTTTTATCAAACATTGCGTGCTCTCCT
Found at i:4007844 original size:88 final size:88
Alignment explanation
Indices: 4007752--4007912 Score: 209
Period size: 88 Copynumber: 1.8 Consensus size: 88
4007742 ACCCTCCTCC
* *
4007752 CTTTTTATCAAGCAATGCGT-CTC-ACTTCCCTTTTTATCAAACATTGGTTATTAACTTCTCTTT
1 CTTTTTATCAAACAATGCGTGCTCTACTT--CTTTTTATCAAACATTGGTTATTAACTTCCCTTT
*
4007815 TCATCAAACATTGCGTGCTCTCCTT
64 TCAACAAACATTGCGTGCTCTCCTT
* * * * **
4007840 CTTTTTATCAAACATTGTGTGCTCTCCTTCTTTTTATCAAACATTGGTTGTTCTCTTCCCTTTTC
1 CTTTTTATCAAACAATGCGTGCTCTACTTCTTTTTATCAAACATTGGTTATTAACTTCCCTTTTC
4007905 AACAAACA
66 AACAAACA
4007913 ATGTATGCTA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
88 56 0.90
89 3 0.05
90 3 0.05
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.44
Consensus pattern (88 bp):
CTTTTTATCAAACAATGCGTGCTCTACTTCTTTTTATCAAACATTGGTTATTAACTTCCCTTTTC
AACAAACATTGCGTGCTCTCCTT
Found at i:4008221 original size:30 final size:29
Alignment explanation
Indices: 4008030--4008463 Score: 231
Period size: 30 Copynumber: 14.5 Consensus size: 29
4008020 CACGCATGTC
*
4008030 TTTCATCAAAC-TATGGTTGCAGT-TTTTCCT
1 TTTCATCAAACAT-TGGTTGC--TCTCTTCCT
* * * * *
4008060 TTTCATCAATCATTGGGTGCTATATTCCAA
1 TTTCATCAAACATTGGTTGCTCTCTTCC-T
*
4008090 TTTCATCAAACATTGGTTACTCTCTTCCCT
1 TTTCATCAAACATTGGTTGCTCTCTT-CCT
* * * *
4008120 TTTTATTAAACACTGGTTGCTCTCTTCTGT
1 TTTCATCAAACATTGGTTGCTCTCTTC-CT
* * *
4008150 TTTC-TACAAACACTAGTTACTCTCTTTCCT
1 TTTCAT-CAAACATTGGTTGCTCTC-TTCCT
*
4008180 TTTCATTAAACATTGGTTGCTCTCTTCCT
1 TTTCATCAAACATTGGTTGCTCTCTTCCT
* *
4008209 TTCTCATCAAACATT-ATGTGTTCTCTTCCGT
1 TT-TCATCAAACATTGGT-TGCTCTCTTCC-T
* * ** *
4008240 TTTCATCAAATACTGGTTATTCTCCTCCCT
1 TTTCATCAAACATTGGTTGCTCT-CTTCCT
* * * *
4008270 TTTAAT-GAA-ATGGAAGTTGCTCTCTTCCC
1 TTTCATCAAACATTG--GTTGCTCTCTTCCT
*
4008299 TTTCGATCAAACACTGCG-TGCTCTCTTTCCTT
1 TTTC-ATCAAACATTG-GTTGCTCTC-TTCC-T
* * *
4008331 TTTCATCAAAAAATT-GTTGCTCTATTTCTT
1 TTTCATC-AAACATTGGTTGCTCT-CTTCCT
*
4008361 TTTCATCAAACACTACGTGTT-CTCT-TTCCT
1 TTTCATCAAACA-T-TG-GTTGCTCTCTTCCT
* * * *
4008391 TTTCATCAAACAATGGTTTCTTTATTTCCT
1 TTTCATCAAACATTGGTTGCTCT-CTTCCT
* *
4008421 ATTCATCAAACATTGGGTGCTCTCTTCCT
1 TTTCATCAAACATTGGTTGCTCTCTTCCT
* *
4008450 TTTTATCATACATT
1 TTTCATCAAACATT
4008464 TTTTAATTTA
Statistics
Matches: 309, Mismatches: 65, Indels: 61
0.71 0.15 0.14
Matches are distributed among these distances:
27 3 0.01
28 7 0.02
29 44 0.14
30 203 0.66
31 34 0.11
32 15 0.05
33 3 0.01
ACGTcount: A:0.21, C:0.24, G:0.10, T:0.45
Consensus pattern (29 bp):
TTTCATCAAACATTGGTTGCTCTCTTCCT
Found at i:4009669 original size:30 final size:30
Alignment explanation
Indices: 4009629--4009947 Score: 254
Period size: 30 Copynumber: 10.7 Consensus size: 30
4009619 TACTTCTTTT
* *
4009629 CTTTTTATCAAACACT-GTGTGCTTTCTTCC
1 CTTTTCATCAAACACTGGT-TGCTCTCTTCC
* ** *
4009659 GTTTTCATC-AACTA-TGGTTGCAATCTTTC
1 CTTTTCATCAAAC-ACTGGTTGCTCTCTTCC
* *
4009688 ATTTTCATCAAACATTGAG-TGCTCTCTTCC
1 CTTTTCATCAAACACTG-GTTGCTCTCTTCC
* *
4009718 TTTTTCATCAAACACTGGTTGATCTCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
* *
4009748 ATTTTCATCAAACACTGGTTACTCTCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
* * ** *
4009778 CTTTTCATCAAATACTAGTTATTCTATTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
* * * *
4009808 CTTTTCATGAAACAATGGTTGTTTTCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
*
4009838 CTTTTGATCAAACACTGCG-TGCTCTCTTCC
1 CTTTTCATCAAACACTG-GTTGCTCTCTTCC
* * * **
4009868 CTTCTCATCAAACAATGGTTGGCTCTATTTT
1 CTTTTCATCAAACACTGGTT-GCTCTCTTCC
* ** *
4009899 CTTTT-ATCAAACAATGCATGCTCTCTTTC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
* *
4009928 ATTTTCATTAAACACTGGTT
1 CTTTTCATCAAACACTGGTT
4009948 CTACAAAGAA
Statistics
Matches: 231, Mismatches: 48, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
29 35 0.15
30 183 0.79
31 13 0.06
ACGTcount: A:0.22, C:0.25, G:0.10, T:0.43
Consensus pattern (30 bp):
CTTTTCATCAAACACTGGTTGCTCTCTTCC
Found at i:4010451 original size:17 final size:17
Alignment explanation
Indices: 4010407--4010451 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
4010397 TAAAAATGTA
*
4010407 TTAATAATAATTTTAAT
1 TTAATAATATTTTTAAT
* *
4010424 TTATATTATATTTTTATT
1 TTA-ATAATATTTTTAAT
4010442 TTAATAATAT
1 TTAATAATAT
4010452 ATAATACATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTAATAATATTTTTAAT
Found at i:4010534 original size:30 final size:29
Alignment explanation
Indices: 4010495--4010573 Score: 77
Period size: 30 Copynumber: 2.7 Consensus size: 29
4010485 GGTGCTCGCT
4010495 TTATTTTTCATTAAACATTAGGCGCTCTC
1 TTATTTTTCATTAAACATTAGGCGCTCTC
* * * *
4010524 TTATATTTTCATCAAATATTAGGTGTTCTC
1 TTAT-TTTTCATTAAACATTAGGCGCTCTC
***
4010554 TCCCCTTTTCATTAAACATT
1 T-TATTTTTCATTAAACATT
4010574 GCATGTTCTC
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
29 4 0.10
30 35 0.90
ACGTcount: A:0.25, C:0.20, G:0.08, T:0.47
Consensus pattern (29 bp):
TTATTTTTCATTAAACATTAGGCGCTCTC
Found at i:4010687 original size:28 final size:28
Alignment explanation
Indices: 4010651--4010717 Score: 71
Period size: 30 Copynumber: 2.3 Consensus size: 28
4010641 CAAGCACTGG
* *
4010651 TTGTTCTCTTACATTTTCGTCAAACATT
1 TTGTGCTCTTACATTTTCGCCAAACATT
* *
4010679 TTGTGCTCTATTACCTTTTCGCCAAATATT
1 TTGTGCTC--TTACATTTTCGCCAAACATT
*
4010709 GTGTGCTCT
1 TTGTGCTCT
4010718 ACCCTTTTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 8 0.25
30 24 0.75
ACGTcount: A:0.18, C:0.22, G:0.12, T:0.48
Consensus pattern (28 bp):
TTGTGCTCTTACATTTTCGCCAAACATT
Found at i:4010714 original size:30 final size:30
Alignment explanation
Indices: 4010659--4010718 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
4010649 GGTTGTTCTC
* *
4010659 TTACATTTTCGTCAAACATTTTGTGCTCTA
1 TTACATTTTCGCCAAACATTGTGTGCTCTA
* *
4010689 TTACCTTTTCGCCAAATATTGTGTGCTCTA
1 TTACATTTTCGCCAAACATTGTGTGCTCTA
4010719 CCCTTTTCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.45
Consensus pattern (30 bp):
TTACATTTTCGCCAAACATTGTGTGCTCTA
Found at i:4010723 original size:28 final size:29
Alignment explanation
Indices: 4010656--4010745 Score: 76
Period size: 28 Copynumber: 3.1 Consensus size: 29
4010646 ACTGGTTGTT
* * *
4010656 CTCT-TACATTTTCGTCAAACATTTTGTG
1 CTCTATACCTTTTCGCCAAACATTGTGTG
*
4010684 CTCTATTACCTTTTCGCCAAATATTGTGTG
1 CTCTA-TACCTTTTCGCCAAACATTGTGTG
* *** *
4010714 CTCTA-CCCTTTTCATAAAACATTGGGTG
1 CTCTATACCTTTTCGCCAAACATTGTGTG
4010742 CTCT
1 CTCT
4010746 CTTTATTTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
28 25 0.50
30 25 0.50
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.42
Consensus pattern (29 bp):
CTCTATACCTTTTCGCCAAACATTGTGTG
Found at i:4010776 original size:30 final size:30
Alignment explanation
Indices: 4010721--4010795 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
4010711 GTGCTCTACC
* * * *
4010721 CTTTTCATAAAACATTGGGTGCTCTCTTTA
1 CTTTTCATCAAACATTAGGTACTCTCTTCA
* * *
4010751 TTTTTCATCAAACATTAGTTACTCTCTTCC
1 CTTTTCATCAAACATTAGGTACTCTCTTCA
4010781 CTTTTCATCAAACAT
1 CTTTTCATCAAACAT
4010796 CGATTGCTCT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.25, C:0.24, G:0.07, T:0.44
Consensus pattern (30 bp):
CTTTTCATCAAACATTAGGTACTCTCTTCA
Found at i:4010861 original size:193 final size:191
Alignment explanation
Indices: 4010580--4010993 Score: 641
Period size: 193 Copynumber: 2.2 Consensus size: 191
4010570 CATTGCATGT
* * *
4010580 TCTCTTCCCTTTTCATCAAACATCGGTTGCTCTAACATTGGTTTCTCTCTTCACATTTCTTCAAG
1 TCTCTTCCCTTTTCATCAAACATCGATTGCTCTAACATTGGTTTCTCTCTTCACATTTCATCAAA
* *
4010645 CACTGGTTGTTCTCTTACATTTTCGTCAAACATTTTGTGCTCTATTACCTTTTCGCCAAATATTG
66 CACTGGTTGTTCTCTTACATTTTCGTCAAACATTTTGTGCTCTATTACCTTTCCGCCAAATATAG
* * * * *
4010710 TGTGCTCTACCCTTTTCATAAAACATTGGGTGCTCTCTT-TATTTTTCATCAAACATTAGTTAC
131 TGTGCTCTACCCTTTTCATAAAACATTAGGTACTCTATTCCA-TTTT-ATCAAACACTAG-TAC
4010773 TCTCTTCCCTTTTCATCAAACATCGATTGCTCTAACATTGGTTTCTCTCTTCACATTTCATCAAA
1 TCTCTTCCCTTTTCATCAAACATCGATTGCTCTAACATTGGTTTCTCTCTTCACATTTCATCAAA
* *
4010838 CACTGTTTGTTCTCTTCCATTTTCGTCAAACATTTTGTGCTCTATTACCTTTCCGCCAAATATAG
66 CACTGGTTGTTCTCTTACATTTTCGTCAAACATTTTGTGCTCTATTACCTTTCCGCCAAATATAG
* *
4010903 TGTGCTCTACCCTTTTCATAAAACATTAGTTACTCTATTCCATTTTATCAAACACTAGTGC
131 TGTGCTCTACCCTTTTCATAAAACATTAGGTACTCTATTCCATTTTATCAAACACTAGTAC
* * *
4010964 TCTCTTACTTTTTCATCAAACATTGATTGC
1 TCTCTTCCCTTTTCATCAAACATCGATTGC
4010994 GCTCTTCTTT
Statistics
Matches: 203, Mismatches: 17, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
191 29 0.14
192 11 0.05
193 162 0.80
194 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.09, T:0.43
Consensus pattern (191 bp):
TCTCTTCCCTTTTCATCAAACATCGATTGCTCTAACATTGGTTTCTCTCTTCACATTTCATCAAA
CACTGGTTGTTCTCTTACATTTTCGTCAAACATTTTGTGCTCTATTACCTTTCCGCCAAATATAG
TGTGCTCTACCCTTTTCATAAAACATTAGGTACTCTATTCCATTTTATCAAACACTAGTAC
Found at i:4010955 original size:29 final size:29
Alignment explanation
Indices: 4010915--4010987 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
4010905 TGCTCTACCC
* *
4010915 TTTTCATAAAACATTAGTTACTCTATTCCA
1 TTTTCATCAAACATTAG-TACTCTATTACA
* * * *
4010945 TTTT-ATCAAACACTAGTGCTCTCTTACT
1 TTTTCATCAAACATTAGTACTCTATTACA
4010973 TTTTCATCAAACATT
1 TTTTCATCAAACATT
4010988 GATTGCGCTC
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
28 12 0.34
29 19 0.54
30 4 0.11
ACGTcount: A:0.30, C:0.22, G:0.04, T:0.44
Consensus pattern (29 bp):
TTTTCATCAAACATTAGTACTCTATTACA
Found at i:4011692 original size:30 final size:30
Alignment explanation
Indices: 4010806--4012503 Score: 702
Period size: 30 Copynumber: 57.0 Consensus size: 30
4010796 CGATTGCTCT
* * *
4010806 AACATTGGTTTCTCTCTTCACATTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * * *
4010836 AACACTGTTTGTTCTCTTCCATTTTCGTCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * * **
4010866 AACATT-TTGTGCTCTATTACCTTTCCGCCA
1 AACATTGGT-TGCTCTCTTCCCTTTTCATCA
* * * *
4010896 AATA-TAG-TG-TGCTCTACCCTTTTCATAA
1 AACATTGGTTGCT-CTCTTCCCTTTTCATCA
* * * *
4010924 AACATTAGTTACTCTATTCCATTTT-ATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * *
4010953 AACACTAG-TGCTCTCTTACTTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * **
4010982 AACATTGATTGCGCTCTTCTTTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
** * *
4011012 AACACAGGTTGGTCTCTTCTCTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * * *
4011042 AACATTAGTTGTTATCTTCCCATTGCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * * *
4011072 AACACTGTTTGTTCTCTTTCCTTTTAATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * *
4011102 AACACTGGTTGCTCTATTCCTTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * * *
4011132 AACACTGGTTGCTTTCTTTCATATTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
** *
4011162 AACATT-GTGTGCTCTCTTCTATTTTAATCA
1 AACATTGGT-TGCTCTCTTCCCTTTTCATCA
* ** ** * *
4011192 AACACTCATTAATATCTTCCATTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * **
4011222 AACAATGGTTGTTCTCTTCTATTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* ***
4011252 AATATTGCG-TGCTCT-TTAATTTTTCATCA
1 AACATTG-GTTGCTCTCTTCCCTTTTCATCA
** * * * **
4011281 AACACCGATTGTTCTTTTCTATTTTCAT-A
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * * * *
4011310 AAAATTTGTTACCCTCCTCCCTTTTTATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * *
4011340 AACATTGGGTGTTCGCTTCCCTTTTTATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
** ** *
4011370 AACATTGGTTATTAACTTCTCTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* ** * *
4011400 AACGTT-GTGTGCTCTCTTTTCTTTTTACCA
1 AACATTGGT-TGCTCTCTTCCCTTTTCATCA
** * *
4011430 AACATTAATTGCTCTCTTTCCTTTTTATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* *
4011460 AACATTGGTTGTTCTCTTCCCTTTTCAACA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * *
4011490 AACAAT-GTATGTTCTCTTTCCTTTTCATCA
1 AACATTGGT-TGCTCTCTTCCCTTTTCATCA
* * * *
4011520 AACATTGATAT--T-TGTTACCTGTTCATCA
1 AACATTGGT-TGCTCTCTTCCCTTTTCATCA
* * * * *
4011548 AATACTGGTAGCTCTTTTCACTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* *
4011578 AACATTGGTTACT-TCTTCCCTTTTTATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* ** * * * *
4011607 AACACTGCATGTTTTATTCCCTTTTCATTA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
** * * *
4011637 AAC-TATGGTTGCAGTTTTTCTTTTTCATCA
1 AACAT-TGGTTGCTCTCTTCCCTTTTCATCA
* *
4011667 AACATTGGGTGCTCTATTCCCTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * *
4011697 AACCTTGGTTACTCTCTTCCCTTTTTATTA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * *
4011727 AACACTGGTTGCTCTATTCCGTTTTCTAT-A
1 AACATTGGTTGCTCTCTTCCCTTTTC-ATCA
*
4011757 AACACTGGTTGCTCTCTT-CCTTTCTCATCA
1 AACATTGGTTGCTCTCTTCCCTTT-TCATCA
* * *
4011787 AACATT-ATCTGTTCTCTTCCGTTTTCATCA
1 AACATTGGT-TGCTCTCTTCCCTTTTCATCA
* * ** * * *
4011817 AATACTGGTTATTCTCATCCCTTTTAATGA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
*** *
4011847 AATGGTGGTTGCTCTCTTCCC-TTTCGATAA
1 AACATTGGTTGCTCTCTTCCCTTTTC-ATCA
* * *
4011877 AACACTGAG-TGCTCTCTTTCTTTTTCATCA
1 AACATTG-GTTGCTCTCTTCCCTTTTCATCA
* * * *
4011907 AACATTAGTTACTCTATTCCATTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * * * *
4011937 AACACTGGGTGCTCTCTTACTTTTTAATTA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * *
4011967 AACATTGATTGCACTATTCCTTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
** * * *
4011997 AACACAGGTTGGTCTATTCTCTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * * *
4012027 AACACTAGTTGTTATCTTCCCATTGT-ATCA
1 AACATTGGTTGCTCTCTTCCC-TTTTCATCA
* * *
4012057 AACACTGGTTGCTCTCTTTCCTTTTAATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* *
4012087 AACACTGGTTGCTCTATT-CCTATTTCATCA
1 AACATTGGTTGCTCTCTTCCCT-TTTCATCA
* * * * * *
4012117 AACACTAGTTTCTTTCATT-CATATTCATCA
1 AACATTGGTTGCTCTC-TTCCCTTTTCATCA
**
4012147 AACATT-GTGTGCTCTCTTCTATTTTCATCA
1 AACATTGGT-TGCTCTCTTCCCTTTTCATCA
* ** ** * *
4012177 AACACTCATTAATATCTT-CCATTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * * *
4012206 AACA-TGGTTGTTTTCTTCTC-TTTAATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
* * *
4012234 AATATAGCG-TGCTCT-TT-CCTTTTCATCG
1 AACATTG-GTTGCTCTCTTCCCTTTTCATCA
** * *
4012262 AACACCGGATTGCCCTCTATTCCGTTTTCATCA
1 AACATTGG-TTG--CTCTCTTCCCTTTTCATCA
* * ** * * *
4012295 AATACTGGTTATTC-CATCCCTTTTAATGA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
*** *
4012324 AATGGTGGTTGCTCTCTTCCC-TTTCGATAA
1 AACATTGGTTGCTCTCTTCCCTTTTC-ATCA
* *
4012354 AACACTGCG-TGCTCTCTTTTCCTTTTTCATCAA
1 AACATTG-GTTGCTCTC--TTCCCTTTTCATC-A
* * * * * *
4012387 AAAATT-GTTGCCCTATTTCTTTTTCATAA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
** * * *
4012416 AACACTACG-TGTTCTCTTTCC-TTTGATCA
1 AACA-TTGGTTGCTCTCTTCCCTTTTCATCA
* * * * * *
4012445 AAC-GTGATTTCTCTATTTCCTATTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
*
4012474 AACATTGGGTGCTCTCTTCCCTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTCATCA
4012504 TAAATTTTTT
Statistics
Matches: 1232, Mismatches: 372, Indels: 128
0.71 0.21 0.07
Matches are distributed among these distances:
27 3 0.00
28 85 0.07
29 176 0.14
30 894 0.73
31 35 0.03
32 15 0.01
33 24 0.02
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (30 bp):
AACATTGGTTGCTCTCTTCCCTTTTCATCA
Found at i:4013796 original size:525 final size:513
Alignment explanation
Indices: 4012776--4013811 Score: 1898
Period size: 525 Copynumber: 2.0 Consensus size: 513
4012766 TACAAGCCTT
4012776 AACTAAAAACGGTTAATCAATATCTACTAAAATAATTATATGACATCAATTCTATAAAAAACAAA
1 AACTAAAAACGGTTAATCAATATCTACTAAAATAATTATATGACATCAATTCTATAAAAAACAAA
4012841 TAATAAGATATATAATTAACAAAAAAATGCCTTTTTGTAAGAGTAAAGGAAAATGATAACAATTT
66 TAATAAGATATATAATTAACAAAAAAATGCCTTTTTGTAAGAGTAAAGGAAAATGATAACAATTT
4012906 GAATCCTTTTTACCTGCCACTTGAAGAGGTGAAAGGTTTGATCAAGAAGATAATTGAATTCAGTT
131 GAATCCTTTTTACCTGCCACTTGAAGAGGTGAAAGGTTTGATCAAGAAGATAATTGAATTCAGTT
4012971 GAGAAAAAGAGTTTAAAGAGGAATGAAAGTGAAACGAAATAACAAAGCTGATTATAACATGGATA
196 GAGAAAAAGAGTTTAAAGAGGAATGAAAGTGAAACGAAATAACAAAGCTGATTATAACATGGATA
4013036 TTTTATATTAATTTGTACCAACAATTTATCTCGATGGATATTTAGGATTAAATTGGGATTATTTT
261 TTTTATATTAATTTGTACCAACAATTTATCTCGATGGATATTTAGGATTAAATTGGGATTATTTT
4013101 GGAGAATTTGAAGTTAATAAACACCATAAACTTTGGAGGAATGTCTAACAACTATCATTTGCAAT
326 GGAGAATTTGAAGTTAATAAACACCATAAACTTTGGAGGAATGTCTAACAACTATCATTTGCAAT
4013166 ACTGGCACTCTTACACTTACAACGTACAGAACAAATGGCTGGTTACTTTCATCAAACTCTTGCTC
391 ACTGGCACTCTTACACTTACAACGTACAGAACAAATGGCTGGTTACTTTCATCAAACTCTTGC-C
*
4013231 TCCTCTTCTCTTTTCTCTCTTTTTATTGGTCTCTTTACACCTTGTGCTCTCTTCAATTA
455 TCCTCTTCTATTTTCTCTCTTTTTATTGGTCTCTTTACACCTTGTGCTCTCTTCAATTA
4013290 AACTAAAAACGGGTTAATCAATATCTACTAAAATAATTATATGACATCAAATTCCTATAAAAAAC
1 AACTAAAAAC-GGTTAATCAATATCTACTAAAATAATTATATGACATC-AATT-CTATAAAAAAC
4013355 AAATAATAAGATATATAATTAACAAAAAAATGCCTTTTTGTAAGAGTAAAAGGAAAATGAATAAC
63 AAATAATAAGATATATAATTAACAAAAAAATGCCTTTTTGTAAGAGT-AAAGGAAAATG-ATAAC
4013420 AATTTGAATCCTTTTTACCTGCCACTTGAAGAGGTGAAAGGTTTGATCAAGAAAGATAAATTGAA
126 AATTTGAATCCTTTTTACCTGCCACTTGAAGAGGTGAAAGGTTTGATCAAG-AAGAT-AATTGAA
4013485 TTCAGTTGAGAAAAAGAGTTTAAAGAGGGAATGAAAGTGAAACGAAAATAAACAAAAGCTGATTA
189 TTCAGTTGAGAAAAAGAGTTTAAAGA-GGAATGAAAGTGAAACG-AAAT-AAC-AAAGCTGATTA
4013550 TAACATGGATATTTTATATTAATTTGTACCAACAATTTATCTCGATGGATATTTTAGGATTAAAG
250 TAACATGGATATTTTATATTAATTTGTACCAACAATTTATCTCGATGGATA-TTTAGGATTAAA-
4013615 TTGGGATTATTTTGGAGAATTTGAAGTTAATAAACACCATAAACTTTGGAGGAATGTCTACAACA
313 TTGGGATTATTTTGGAGAATTTGAAGTTAATAAACACCATAAACTTTGGAGGAATGTCT--AACA
4013680 ACTATCATTTGCAATACTGGCACTCTTACACTTACAACGTACAGAACAAATGGCTGGTTACTTTC
376 ACTATCATTTGCAATACTGGCACTCTTACACTTACAACGTACAGAACAAATGGCTGGTTACTTTC
4013745 ATCAAACTCTTG-CT-CTCTTCTATTTTCTCTC-TTTTATTGGTCTCTTTACACCTTGTGCTCTC
441 ATCAAACTCTTGCCTCCTCTTCTATTTTCTCTCTTTTTATTGGTCTCTTTACACCTTGTGCTCTC
4013807 TTCAA
506 TTCAA
4013812 ATTGGTTTCT
Statistics
Matches: 506, Mismatches: 1, Indels: 19
0.96 0.00 0.04
Matches are distributed among these distances:
514 10 0.02
515 37 0.07
516 4 0.01
517 58 0.11
518 11 0.02
519 56 0.11
520 5 0.01
521 33 0.07
522 17 0.03
523 4 0.01
524 3 0.01
525 98 0.19
526 28 0.06
527 61 0.12
529 81 0.16
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (513 bp):
AACTAAAAACGGTTAATCAATATCTACTAAAATAATTATATGACATCAATTCTATAAAAAACAAA
TAATAAGATATATAATTAACAAAAAAATGCCTTTTTGTAAGAGTAAAGGAAAATGATAACAATTT
GAATCCTTTTTACCTGCCACTTGAAGAGGTGAAAGGTTTGATCAAGAAGATAATTGAATTCAGTT
GAGAAAAAGAGTTTAAAGAGGAATGAAAGTGAAACGAAATAACAAAGCTGATTATAACATGGATA
TTTTATATTAATTTGTACCAACAATTTATCTCGATGGATATTTAGGATTAAATTGGGATTATTTT
GGAGAATTTGAAGTTAATAAACACCATAAACTTTGGAGGAATGTCTAACAACTATCATTTGCAAT
ACTGGCACTCTTACACTTACAACGTACAGAACAAATGGCTGGTTACTTTCATCAAACTCTTGCCT
CCTCTTCTATTTTCTCTCTTTTTATTGGTCTCTTTACACCTTGTGCTCTCTTCAATTA
Found at i:4014281 original size:30 final size:30
Alignment explanation
Indices: 4014185--4014533 Score: 298
Period size: 30 Copynumber: 11.7 Consensus size: 30
4014175 TACTTCTTTT
* *
4014185 CTTTTTATCAAACACTGCG-TGCTTTCTTCC
1 CTTTTCATCAAACACTG-GTTGCTCTCTTCC
* ** *
4014215 CTTTTTATCAAACTA-TGGTTGCAATCTT-T
1 CTTTTCATCAAAC-ACTGGTTGCTCTCTTCC
*
4014244 CTTTTCATCAAACATTGAGTT-CTCTCTTCC
1 CTTTTCATCAAACACTG-GTTGCTCTCTTCC
* * *
4014274 TTTTTCATCAAACACTGGTTGATCTATTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
* * *
4014304 ATTTTCATCAAACACTGGTTGATCTCTTTC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
* *
4014334 ATTTTCATCAAACACTGGTTACTCTCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
* * ** *
4014364 CTTTTCATCAAATACTAGTTATTCTATTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
* * * *
4014394 TTTTTCATGAAACACTGGTTGTTTTCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
*
4014424 CTTTTGATCAAACACTGCG-TGCTCTCTTCC
1 CTTTTCATCAAACACTG-GTTGCTCTCTTCC
* * * **
4014454 CTTTTCATCAAACAATGGTTGATCTATTTT
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
*
4014484 CTTTTCATCAAACA-TCGCG-TGCTCTCTTTC
1 CTTTTCATCAAACACT-G-GTTGCTCTCTTCC
* *
4014514 ATTTTCATTAAACACTGGTT
1 CTTTTCATCAAACACTGGTT
4014534 CTGCAAAAGA
Statistics
Matches: 262, Mismatches: 45, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
28 1 0.00
29 26 0.10
30 231 0.88
31 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.44
Consensus pattern (30 bp):
CTTTTCATCAAACACTGGTTGCTCTCTTCC
Found at i:4014372 original size:90 final size:88
Alignment explanation
Indices: 4014171--4014533 Score: 337
Period size: 90 Copynumber: 4.1 Consensus size: 88
4014161 CAAAATTTTA
** * * * * *
4014171 TGGTTACT-TCTTTTCTTTTTATCAAACACTGCG-TGCTTTCTTCCCTTTTTATCAAACTATGGT
1 TGGTTACTCTCTTCCCTTTTCATCAAACACTG-GTTGATCTATT-CCTTTTCATCAAAC-ATGGT
* *
4014234 TGCA-ATCTTTC-TTTTCATCAAACAT
63 TG-ATCTCTTTCATTTTCATCAAACAC
*
4014259 TGAGTT-CTCTCTTCCTTTTTCATCAAACACTGGTTGATCTATTCCATTTTCATCAAACACTGGT
1 TG-GTTACTCTCTTCCCTTTTCATCAAACACTGGTTGATCTATTCC-TTTTCATCAAACA-TGGT
4014323 TGATCTCTTTCATTTTCATCAAACAC
63 TGATCTCTTTCATTTTCATCAAACAC
* * *
4014349 TGGTTACTCTCTTCCCTTTTCATCAAATACTAGTT-ATTCTATTCCTTTTTCATGAAACACTGGT
1 TGGTTACTCTCTTCCCTTTTCATCAAACACTGGTTGA-TCTATTCC-TTTTCATCAAACA-TGGT
* * * * *
4014413 TGTTTTCTTCCCTTTTGATCAAACAC
63 TGATCTCTTTCATTTTCATCAAACAC
* * *
4014439 TGCG-TGCTCTCTTCCCTTTTCATCAAACAATGGTTGATCTATTTTCTTTTCATCAAACATCGCG
1 TG-GTTACTCTCTTCCCTTTTCATCAAACACTGGTTGATCTA-TTCCTTTTCATCAAACAT-G-G
* *
4014503 -TGCTCTCTTTCATTTTCATTAAACAC
62 TTGATCTCTTTCATTTTCATCAAACAC
4014529 TGGTT
1 TGGTT
4014534 CTGCAAAAGA
Statistics
Matches: 228, Mismatches: 32, Indels: 28
0.79 0.11 0.10
Matches are distributed among these distances:
88 9 0.04
89 57 0.25
90 156 0.68
91 6 0.03
ACGTcount: A:0.21, C:0.25, G:0.10, T:0.45
Consensus pattern (88 bp):
TGGTTACTCTCTTCCCTTTTCATCAAACACTGGTTGATCTATTCCTTTTCATCAAACATGGTTGA
TCTCTTTCATTTTCATCAAACAC
Found at i:4014995 original size:30 final size:27
Alignment explanation
Indices: 4014931--4014995 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 27
4014921 TTAAATACTT
4014931 AAAATAATATTATTTTATATATTTAATA
1 AAAAT-ATATTATTTTATATATTTAATA
**
4014959 TTAATATATTATTTTAGTATCATTTTAATA
1 AAAATATATTATTTTA-TAT-A-TTTAATA
4014989 AAAATAT
1 AAAATAT
4014996 TAATTAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 11 0.37
28 6 0.20
29 1 0.03
30 12 0.40
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (27 bp):
AAAATATATTATTTTATATATTTAATA
Found at i:4015114 original size:30 final size:30
Alignment explanation
Indices: 4015080--4015154 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
4015070 TAAAAATATT
* ***
4015080 ATCAAATATTTGGTGCTCGCTTTTTTTTTC
1 ATCAAATATTAGGTGCTCGCTTCCATTTTC
* * *
4015110 ATCAAACATTAGGCGCTCTCTTCCATTTTC
1 ATCAAATATTAGGTGCTCGCTTCCATTTTC
4015140 ATCAAATATTAGGTG
1 ATCAAATATTAGGTG
4015155 TTCTCACCCC
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (30 bp):
ATCAAATATTAGGTGCTCGCTTCCATTTTC
Found at i:4015169 original size:30 final size:30
Alignment explanation
Indices: 4015105--4015179 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
4015095 CTCGCTTTTT
**
4015105 TTTTCATCAAACATTAGGCGCTCTCTTCCA
1 TTTTCATCAAACATTAGGCGCTCTCACCCA
* * * *
4015135 TTTTCATCAAATATTAGGTGTTCTCACCCC
1 TTTTCATCAAACATTAGGCGCTCTCACCCA
*
4015165 TTTTCATTAAACATT
1 TTTTCATCAAACATT
4015180 GCATGTTCTC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.41
Consensus pattern (30 bp):
TTTTCATCAAACATTAGGCGCTCTCACCCA
Found at i:4015265 original size:30 final size:30
Alignment explanation
Indices: 4015231--4015687 Score: 86
Period size: 30 Copynumber: 15.2 Consensus size: 30
4015221 CATTGGTTTC
4015231 TCTCTTCACATTTCATCAAACAATGGTTGT
1 TCTCTTCACATTTCATCAAACAATGGTTGT
* *
4015261 TCTCTTC-CATTTTCGTCAAAC-AT-TTTGT
1 TCTCTTCACA-TTTCATCAAACAATGGTTGT
* * * ** * *
4015289 GCTCTATTACCTTTTCGCCAAA-TATTG-TGT
1 TCTCT-TCA-CATTTCATCAAACAATGGTTGT
* * * * * * *
4015319 GCTCTACCCTTTTCATAAAACATTGGGTGCT
1 TCTCTTCACATTTCATCAAACAATGGTTG-T
** * * **
4015350 CTCTCTTTC-TTTTTCATCAAACATTAGTTAC
1 -TCTC-TTCACATTTCATCAAACAATGGTTGT
* * * *
4015381 TCTATTCA-ATTTTCATCAAACACTGGGTGC
1 TCTCTTCACA-TTTCATCAAACAATGGTTGT
* * *
4015411 TCTCTT-ACTATTTCATCAAACATTGATTGC
1 TCTCTTCAC-ATTTCATCAAACAATGGTTGT
* * * *
4015441 GCTATTC-CTTTTTCATCAAACACA-GGTTGG
1 TCTCTTCAC-ATTTCATCAAACA-ATGGTTGT
* * * *
4015471 TCTCTTCTCTTTTCATCAAACACTAGTTGT
1 TCTCTTCACATTTCATCAAACAATGGTTGT
* * * *
4015501 TATCTTCCCATTGT-ATCAAACACTGGTTGC
1 TCTCTTCACATT-TCATCAAACAATGGTTGT
** * * * *
4015531 TCTCTTTTCTTTTAATCAAACACTGGTTGC
1 TCTCTTCACATTTCATCAAACAATGGTTGT
* * *
4015561 TCTATTC-CTATTTCATCAAACACTAG-T-T
1 TCTCTTCAC-ATTTCATCAAACAATGGTTGT
* *
4015589 TCT-TTCATTCATATTCATCAAAC-ATTGTGTGC
1 TCTCTTCA--CAT-TTCATCAAACAATGGT-TGT
* * ** **
4015621 TCTCTTCTA-TTTTCATCAAACACTCATTAA
1 TCTCTTC-ACATTTCATCAAACAATGGTTGT
*
4015651 TATCTTC-CATTTTCATCAAACAATGGTTGT
1 TCTCTTCACA-TTTCATCAAACAATGGTTGT
*
4015681 TTTCTTC
1 TCTCTTC
4015688 TCTTTTAATC
Statistics
Matches: 316, Mismatches: 77, Indels: 68
0.69 0.17 0.15
Matches are distributed among these distances:
27 3 0.01
28 20 0.06
29 18 0.06
30 238 0.75
31 9 0.03
32 22 0.07
33 5 0.02
34 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.43
Consensus pattern (30 bp):
TCTCTTCACATTTCATCAAACAATGGTTGT
Found at i:4015427 original size:60 final size:58
Alignment explanation
Indices: 4015219--4016296 Score: 260
Period size: 60 Copynumber: 18.2 Consensus size: 58
4015209 CGGTTGCTAT
* * * * * * *
4015219 AACATTGGTTTCTCTCTTCACATTTCATCAAACAATGGTTGTTCTCTTCCATTTTCGTCA
1 AACACTGGTTGCTCTCTTC-TATTTCATCAAAC-ATTGTTGCTCTATTCCATTTTCATCA
** * ** * * *
4015279 AACA-TTTTGTGCTCTATTACCT-TTTCGCCAAATATTGTGTGCTCTA--CCCTTTTCATAA
1 AACACTGGT-TGCTCTCTT--CTATTTCATCAAACATTGT-TGCTCTATTCCATTTTCATCA
* * * * *
4015337 AACATTGGGTGCTCTCTCTTTCTTTTTCATCAAACATTAGTTACTCTATTCAATTTTCATCA
1 AACACTGGTTG--CTCTC-TTCTATTTCATCAAACATT-GTTGCTCTATTCCATTTTCATCA
* * *
4015399 AACACTGGGTGCTCTCTTACTATTTCATCAAACATTGATTGCGCTATTCCTTTTTCATCA
1 AACACTGGTTGCTCTCTT-CTATTTCATCAAACATTG-TTGCTCTATTCCATTTTCATCA
* * * * * * * *
4015459 AACACAGGTTGGTCTCTTCTCTTTTCATCAAACACTAGTTGTTATCTTCCCATTGT-ATCA
1 AACACTGGTTGCTCTCTTCT-ATTTCATCAAACA-TTGTTGCTCTATT-CCATTTTCATCA
* *
4015519 AACACTGGTTGCTCTCTTTTCT-TTTAATCAAACACTGGTTGCTCTATTCC-TATTTCATCA
1 AACACTGGTTGCTCTC--TTCTATTTCATCAAACA-TTGTTGCTCTATTCCAT-TTTCATCA
* * * * *
4015579 AACACTAGTTTCTTTCATTC-ATATTCATCAAACATTGTGTGCTCTCTTCTATTTTCATCA
1 AACACTGGTTGCTCTC-TTCTAT-TTCATCAAACATTGT-TGCTCTATTCCATTTTCATCA
** ** * * * * * * *
4015639 AACACTCATTAATATCTTCCATTTTCATCAAACAATGGTTGTTTTCTTCTC-TTTTAATCA
1 AACACTGGTTGCTCTCTTCTA-TTTCATCAAAC-ATTGTTGCTCTATTC-CATTTTCATCA
* * * ** * * *
4015699 AATA-TAGCG-TGCTCT-TTCCTTTTTCATCGAACACCGATTGCCCTTTTCCCTTTTCAT-A
1 AACACT-G-GTTGCTCTCTT-CTATTTCATCAAACATTG-TTGCTCTATTCCATTTTCATCA
* * * * * * ** * *
4015757 AAAAATTGTTACCCTCCTCCCTTTCTATCAAACATTGTGTGCTC-ACTTCCCTTTTTATCA
1 AACACTGGTTGCTCTCTTCTATTTC-ATCAAACATTGT-TGCTCTA-TTCCATTTTCATCA
* ** ** * * * * *
4015817 AACATTGGTTATTAACTTCTCTTTTCATCAAACATTGTGTGCTCTCTTTTC-TTTTTACCA
1 AACACTGGTTGCTCTCTTCT-ATTTCATCAAACATTGT-TGCTCT-ATTCCATTTTCATCA
** * * * * * * *
4015877 AACACTAATTGCTCTATTTTCT-TTTTATTAAACATTGGTTGTTCTCTTCCCTTTTCAACA
1 AACACTGGTTGCTC--TCTTCTATTTCATCAAACATT-GTTGCTCTATTCCATTTTCATCA
* * ** * * *
4015937 AACAAT-GTATGCTCTCTTCCCT-TTTCATCAAACATTGATAAT-TGTTTCATGTTCATCA
1 AACACTGGT-TGCTCTCTT--CTATTTCATCAAACATTGTTGCTCTATTCCATTTTCATCA
* * * * * * * *
4015995 AATACTGGTAGCTCTTTTCCCT-TTTCATCAAACTTTGGTTACT-TCTTCCCTTTTTATCA
1 AACACTGGTTGCTCTCTT--CTATTTCATCAAACATT-GTTGCTCTATTCCATTTTCATCA
* * * * *
4016054 AACAC----TGC-AT-GTCT-TTTCATCAAACTATGGTTCCAGT-TTTTCC-TTTTCATCA
1 AACACTGGTTGCTCTCTTCTATTTCATCAAAC-ATTGTTGC--TCTATTCCATTTTCATCA
* * * * * * * * * *
4016106 AACATTGGGTGTTATATTCCCT-TTTCATCAAACATTGGTTACTCTCTTCCCTTTTTATTA
1 AACACTGGTTGCTCTCTT--CTATTTCATCAAACATT-GTTGCTCTATTCCATTTTCATCA
* * * * * * *
4016166 AACACTGGTTGCTCTCTTCTGTTTTC-TACACACACTGGTTACTCTCTTTCATTTTCATTA
1 AACACTGGTTGCTCTCTTCT-ATTTCAT-CAAACA-TTGTTGCTCTATTCCATTTTCATCA
* * * *
4016226 AACATTGGTTGCTCTCTTCCT-TTCTCATCAAACATTATTGTGTTCTATTCCGTTTTCATCA
1 AACACTGGTTGCTCTCTT-CTATT-TCATCAAACATT-GT-TGCTCTATTCCATTTTCATCA
*
4016287 AATACTGGTT
1 AACACTGGTT
4016297 ATTCTCATCC
Statistics
Matches: 753, Mismatches: 189, Indels: 151
0.69 0.17 0.14
Matches are distributed among these distances:
51 17 0.02
52 13 0.02
53 7 0.01
54 1 0.00
55 2 0.00
56 2 0.00
57 3 0.00
58 79 0.10
59 118 0.16
60 430 0.57
61 53 0.07
62 28 0.04
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (58 bp):
AACACTGGTTGCTCTCTTCTATTTCATCAAACATTGTTGCTCTATTCCATTTTCATCA
Found at i:4015699 original size:30 final size:30
Alignment explanation
Indices: 4015327--4016497 Score: 396
Period size: 30 Copynumber: 39.3 Consensus size: 30
4015317 GTGCTCTACC
* * * *
4015327 CTTTTCATAAAACATTGGGTGCTCTCTCTTT
1 CTTTTCATCAAACACTGGTTGCTCTCT-TCT
* * * * *
4015358 CTTTTTCATCAAACATTAGTTACTCTATTCA
1 C-TTTTCATCAAACACTGGTTGCTCTCTTCT
* *
4015389 ATTTTCATCAAACACTGGGTGCTCTCTTACT
1 CTTTTCATCAAACACTGGTTGCTCTCTT-CT
* * * * *
4015420 -ATTTCATCAAACATTGATTGCGCTATTC-
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* *
4015448 CTTTTTCATCAAACACAGGTTGGTCTCTTCT
1 C-TTTTCATCAAACACTGGTTGCTCTCTTCT
* * * *
4015479 CTTTTCATCAAACACTAGTTGTTATCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* *
4015509 CATTGT-ATCAAACACTGGTTGCTCTCTTTT
1 C-TTTTCATCAAACACTGGTTGCTCTCTTCT
* *
4015539 CTTTTAATCAAACACTGGTTGCTCTATTC-
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* * *
4015568 CTATTTCATCAAACACTAGTTTCTTTCATTC-
1 CT-TTTCATCAAACACTGGTTGCTCTC-TTCT
* * *
4015599 ATATTCATCAAACA-TTGTGTGCTCTCTTCT
1 CTTTTCATCAAACACTGGT-TGCTCTCTTCT
* ** ** *
4015629 ATTTTCATCAAACACTCATTAATATCTTC-
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* * *
4015658 CATTTTCATCAAACAATGGTTGTTTTCTTCT
1 C-TTTTCATCAAACACTGGTTGCTCTCTTCT
* *
4015689 CTTTTAATCAAATA-TAGCG-TGCTCT-TTC-
1 CTTTTCATCAAACACT-G-GTTGCTCTCTTCT
* * * * * *
4015717 CTTTTTCATCGAACACCGATTGCCCTTTTCC
1 C-TTTTCATCAAACACTGGTTGCTCTCTTCT
* * * * * *
4015748 CTTTTCAT-AAAAAATTGTTACCCTCCTC-
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* * * *
4015776 CCTTTCTATCAAACA-TTGTGTGCTCACTTCC
1 CTTTTC-ATCAAACACTGGT-TGCTCTCTTCT
* * ** **
4015807 CTTTTTATCAAACATTGGTTATTAACTTCT
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* *
4015837 CTTTTCATCAAACA-TTGTGTGCTCTCTTTT
1 CTTTTCATCAAACACTGGT-TGCTCTCTTCT
* * ** * *
4015867 CTTTTTACCAAACACTAATTGCTCTATTTT
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* * * * *
4015897 CTTTTTATTAAACATTGGTTGTTCTCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* * *
4015927 CTTTTCAACAAACAAT-GTATGCTCTCTTCC
1 CTTTTCATCAAACACTGGT-TGCTCTCTTCT
* * ** *
4015957 CTTTTCATCAAACA-TTGATAAT-TGTT-T
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* * * * *
4015984 CATGTTCATCAAATACTGGTAGCTCTTTTCC
1 C-TTTTCATCAAACACTGGTTGCTCTCTTCT
** * *
4016015 CTTTTCATCAAACTTTGGTTACT-TCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* * *
4016044 CTTTTTATCAAACAC----TG----CATGT
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* *
4016066 CTTTTCATCAAACTA-TGGTTCCAGT-TTTTC-
1 CTTTTCATCAAAC-ACTGGTTGC--TCTCTTCT
* * * * * *
4016096 CTTTTCATCAAACATTGGGTGTTATATTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* * *
4016126 CTTTTCATCAAACATTGGTTACTCTCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* *
4016156 CTTTTTATTAAACACTGGTTGCTCTCTTCT
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* * *
4016186 GTTTTC-TACACACACTGGTTACTCTCTT-T
1 CTTTTCAT-CAAACACTGGTTGCTCTCTTCT
* *
4016215 CATTTTCATTAAACATTGGTTGCTCTCTTC-
1 C-TTTTCATCAAACACTGGTTGCTCTCTTCT
* ** * *
4016245 CTTTCTCATCAAACATTATTGTGTTCTATTC-
1 CTTT-TCATCAAACACTGGT-TGCTCTCTTCT
* ** * *
4016276 CGTTTTCATCAAATACTGGTTATTCTCATCC
1 C-TTTTCATCAAACACTGGTTGCTCTCTTCT
* * ***
4016307 CTTTTAATGAAATGGTGGTTGCTCTCTTC-
1 CTTTTCATCAAACACTGGTTGCTCTCTTCT
* *
4016336 CCTTTCGATAAAACACTGCG-TGCTCTCTT-T
1 CTTTTC-ATCAAACACTG-GTTGCTCTCTTCT
* * * * *
4016366 CCTTTTTCATCAAAAAATTGTTGCCCTATT-T
1 -C-TTTTCATCAAACACTGGTTGCTCTCTTCT
*
4016397 CTTTTTCATAAAACACTACGTGTT-CTCT-TTC-
1 C-TTTTCATCAAACACT--G-GTTGCTCTCTTCT
* * * *
4016428 CTTTTGATCAAACGA-TGATTTCTCTATT-T
1 CTTTTCATCAAAC-ACTGGTTGCTCTCTTCT
* * * *
4016457 CCTATTCATCAAACATTGGGTGCTCTCTTCC
1 -CTTTTCATCAAACACTGGTTGCTCTCTTCT
4016488 CTTTTCATCA
1 CTTTTCATCA
4016498 TACATTTTTT
Statistics
Matches: 840, Mismatches: 228, Indels: 145
0.69 0.19 0.12
Matches are distributed among these distances:
22 14 0.02
23 1 0.00
25 1 0.00
26 1 0.00
27 3 0.00
28 26 0.03
29 94 0.11
30 596 0.71
31 70 0.08
32 31 0.04
33 3 0.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (30 bp):
CTTTTCATCAAACACTGGTTGCTCTCTTCT
Found at i:4016352 original size:151 final size:149
Alignment explanation
Indices: 4016093--4016371 Score: 330
Period size: 151 Copynumber: 1.9 Consensus size: 149
4016083 GTTCCAGTTT
* *
4016093 TTCCTTTTCATCAAACATTGGGTGTTATATTCCCTTTTCATCAAACATTGGTTACTCTCTTCCCT
1 TTCCTTTTCATCAAACATTGGGTGTTATATTCCCTTTTCATCAAACACTGGTTACTCTCATCCCT
* * ** *
4016158 TTTTATTAAACACTGGTTGCTCTCTTCTGTTTTCTACACACACTG-GTTACTCTCTTTCATTTTC
66 TTTAATGAAACACTGGTTGCTCTCTTCTCCTTTCTACAAACACTGCG-TACTCTCTTTCATTTTC
4016222 ATTAAACATTGGTTGCTCTC
130 ATTAAACATTGGTTGCTCTC
** * * * *
4016242 TTCCTTTCTCATCAAACATTATTGTGTTCTATTCCGTTTTCATCAAATACTGGTTATTCTCATCC
1 TTCCTTT-TCATCAAACATT-GGGTGTTATATTCCCTTTTCATCAAACACTGGTTACTCTCATCC
*** * *
4016307 CTTTTAATGAAATGGTGGTTGCTCTCTTC-CCTTTCGATA-AAACACTGCGTGCTCTCTTTCCTT
64 CTTTTAATGAAACACTGGTTGCTCTCTTCTCCTTTC--TACAAACACTGCGTACTCTCTTTCATT
4016370 TT
127 TT
4016372 TCATCAAAAA
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
149 7 0.07
150 16 0.15
151 81 0.76
152 3 0.03
ACGTcount: A:0.19, C:0.25, G:0.11, T:0.45
Consensus pattern (149 bp):
TTCCTTTTCATCAAACATTGGGTGTTATATTCCCTTTTCATCAAACACTGGTTACTCTCATCCCT
TTTAATGAAACACTGGTTGCTCTCTTCTCCTTTCTACAAACACTGCGTACTCTCTTTCATTTTCA
TTAAACATTGGTTGCTCTC
Found at i:4017352 original size:80 final size:80
Alignment explanation
Indices: 4017216--4017363 Score: 181
Period size: 80 Copynumber: 1.9 Consensus size: 80
4017206 GAACAAATGG
* * * * * *
4017216 CTGGTTACTTTCATCAAACTCTTGCTCTCTTCTATTTTCTCTCTTTTATTGGTCTCTTTACGCCT
1 CTGGTTACTTTCATCAAACACTTGCTCTCTTCTATTTTCTATCTTTCATTGCTCTCTTCACACCT
4017281 TGTGCTCTCTTCAAA
66 TGTGCTCTCTTCAAA
* * * * *
4017296 CTGGTTTCTTTCCTCAAACACTTGTTCTCTTCTCTTTTCTAT-TTTCCGTTGCTCTCTTCACACC
1 CTGGTTACTTTCATCAAACACTTGCTCTCTTCTATTTTCTATCTTT-CATTGCTCTCTTCACACC
4017360 TTGT
65 TTGT
4017364 CTTATATTTC
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 3 0.05
80 53 0.95
ACGTcount: A:0.12, C:0.29, G:0.09, T:0.49
Consensus pattern (80 bp):
CTGGTTACTTTCATCAAACACTTGCTCTCTTCTATTTTCTATCTTTCATTGCTCTCTTCACACCT
TGTGCTCTCTTCAAA
Found at i:4017795 original size:30 final size:30
Alignment explanation
Indices: 4017699--4018017 Score: 265
Period size: 30 Copynumber: 10.7 Consensus size: 30
4017689 TACTTCTTTT
* *
4017699 CTTTTTATCAAACACTGCG-TGCTTTCTTCC
1 CTTTTCATCAAACACTG-GTTGCTCTCTTCC
* ** *
4017729 CTTTTTATCAAACTA-TGGTTGCAATCTT-T
1 CTTTTCATCAAAC-ACTGGTTGCTCTCTTCC
* *
4017758 CTTTTCATCAAACATTGAGTT-CTCTCTTCT
1 CTTTTCATCAAACACTG-GTTGCTCTCTTCC
* *
4017788 TTTTTCATCAAACACTGGTTGATCTCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
* *
4017818 ATTTTCATCAAACACTGGTTACTCTCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
* * ** *
4017848 CTTTTCATCAAATACTAGTTATTCTATTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
* * * *
4017878 TTTTTCATGAAACACTGGTTGTTTTCTTCC
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
*
4017908 CTTTTGATCAAACACTGCG-TGCTCTCTTCC
1 CTTTTCATCAAACACTG-GTTGCTCTCTTCC
* * * **
4017938 CTTTTCATCAAACAATGGTTGATCTATTTT
1 CTTTTCATCAAACACTGGTTGCTCTCTTCC
*
4017968 CTTTTCATCAAACA-TCGCG-TGCTCTCTTTC
1 CTTTTCATCAAACACT-G-GTTGCTCTCTTCC
* *
4017998 ATTTTCATTAAACACTGGTT
1 CTTTTCATCAAACACTGGTT
4018018 CTGCAAAAGA
Statistics
Matches: 236, Mismatches: 41, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
28 1 0.00
29 26 0.11
30 205 0.87
31 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.09, T:0.44
Consensus pattern (30 bp):
CTTTTCATCAAACACTGGTTGCTCTCTTCC
Found at i:4018479 original size:30 final size:27
Alignment explanation
Indices: 4018415--4018479 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 27
4018405 TTAAATACTT
4018415 AAAATAATATTATTTTATATATTTAATA
1 AAAAT-ATATTATTTTATATATTTAATA
**
4018443 TTAATATATTATTTTAGTATCATTTTAATA
1 AAAATATATTATTTTA-TAT-A-TTTAATA
4018473 AAAATAT
1 AAAATAT
4018480 TAATTAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 11 0.37
28 6 0.20
29 1 0.03
30 12 0.40
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (27 bp):
AAAATATATTATTTTATATATTTAATA
Found at i:4018545 original size:21 final size:20
Alignment explanation
Indices: 4018496--4018547 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
4018486 AAAAATGTAT
4018496 TAATA-ATAATTTTAATTTA
1 TAATATATAATTTTAATTTA
* * *
4018515 TTATATTATATTTTTATTTTAA
1 TAATA-TATAATTTTAATTT-A
4018537 TAATATATAAT
1 TAATATATAAT
4018548 AAATTATTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
19 4 0.16
21 16 0.64
22 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TAATATATAATTTTAATTTA
Found at i:4018599 original size:30 final size:30
Alignment explanation
Indices: 4018565--4018639 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
4018555 TAAAAATATT
* ***
4018565 ATCAAATATTTGGTGCTCGCTTTTTTTTTC
1 ATCAAATATTAGGTGCTCGCTTCCATTTTC
* * *
4018595 ATCAAACATTAGGCGCTCTCTTCCATTTTC
1 ATCAAATATTAGGTGCTCGCTTCCATTTTC
4018625 ATCAAATATTAGGTG
1 ATCAAATATTAGGTG
4018640 TTCTCACCCC
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (30 bp):
ATCAAATATTAGGTGCTCGCTTCCATTTTC
Found at i:4018654 original size:30 final size:30
Alignment explanation
Indices: 4018590--4018664 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
4018580 CTCGCTTTTT
**
4018590 TTTTCATCAAACATTAGGCGCTCTCTTCCA
1 TTTTCATCAAACATTAGGCGCTCTCACCCA
* * * *
4018620 TTTTCATCAAATATTAGGTGTTCTCACCCC
1 TTTTCATCAAACATTAGGCGCTCTCACCCA
*
4018650 TTTTCATTAAACATT
1 TTTTCATCAAACATT
4018665 TCATGTTCTC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.41
Consensus pattern (30 bp):
TTTTCATCAAACATTAGGCGCTCTCACCCA
Found at i:4018814 original size:28 final size:29
Alignment explanation
Indices: 4018755--4018838 Score: 80
Period size: 28 Copynumber: 2.9 Consensus size: 29
4018745 TTCTCTTCCA
* *
4018755 TTTTCGTCAAACATTTTGTGCTCTATTACC
1 TTTTCGCCAAACATTGTGTGCTCTA-TACC
* *
4018785 TTTTCGCCAAATATTGTGTGCTCTA-CCC
1 TTTTCGCCAAACATTGTGTGCTCTATACC
*** *
4018813 TTTTCATAAAACATTGGGTGCTCTAT
1 TTTTCGCCAAACATTGTGTGCTCTAT
4018839 TTCTTTTTCA
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
28 22 0.50
30 22 0.50
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (29 bp):
TTTTCGCCAAACATTGTGTGCTCTATACC
Found at i:4019414 original size:30 final size:30
Alignment explanation
Indices: 4018704--4019977 Score: 289
Period size: 30 Copynumber: 43.2 Consensus size: 30
4018694 CGGTTGCTAT
* * * *
4018704 AACATTGGTTTCTCTCTTCACATTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * * **
4018734 AACAATGGTTGTTCTCTTCCATTTTCGTCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * * ***
4018764 AACATT-TTGTGCTCTATTACCTTTTCGCCA
1 AACATTGGT-TGCTCTCTTCCCTTTTTATCA
* * * *
4018794 AATATT-G-TG-TGCTCTACCCTTTTCATAA
1 AACATTGGTTGCT-CTCTTCCCTTTTTATCA
* * *
4018822 AACATTGGGTGCTCTATT-TCTTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTT-ATCA
* ** * * *
4018852 AACATTAGTTATTCTATTCCATTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * * *
4018882 AACACTGGGTGCTCTCTT-ACTATTTCATCA
1 AACATTGGTTGCTCTCTTCCCT-TTTTATCA
* * * *
4018912 AACATTGATTGCGCTATT-CCTATTTCATCA
1 AACATTGGTTGCTCTCTTCCCT-TTTTATCA
** * * *
4018942 AACACAGGTTGGTCTCTTCTCTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * * * * *
4018972 AACACTAGTTGTTATCTTCCCATTGTATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * *
4019002 AACACTGGTTGCTCTCTTTCCTTTTAATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * *
4019032 AACACTGGTTGCTCTATT-CCTATTTCATCA
1 AACATTGGTTGCTCTCTTCCCT-TTTTATCA
* * * * * * *
4019062 AACACTAGTTTCTTTCATT-CATATTCATCA
1 AACATTGGTTGCTCTC-TTCCCTTTTTATCA
** *
4019092 AACATT-GTGTGCTCTCTTCTATTTTCATCA
1 AACATTGGT-TGCTCTCTTCCCTTTTTATCA
* ** ** * * *
4019122 AACACTCATTAATATCTTCCATTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * * * *
4019152 AACAATGGTTGTTTTCTTCTCTTTTAATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * *
4019182 AATATAGCG-TGCTCT-TT-CCTTTTTCATCG
1 AACATTG-GTTGCTCTCTTCCCTTTTT-ATCA
** * * * * *
4019211 AACACCGATTGCCCTTTTCCCTTTTCATAA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * * *
4019241 AAAATT-GTTACCCTCCTCCCTTTTTATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
*
4019270 AACATTGCG-TGCTCACTTCCCTTTTTATCA
1 AACATTG-GTTGCTCTCTTCCCTTTTTATCA
** ** * *
4019300 AACATTGGTTATTAACTTCTCTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
** *
4019330 AACATT-GTGTGCTCTCTTTTCTTTTTACCA
1 AACATTGGT-TGCTCTCTTCCCTTTTTATCA
* ** * ** *
4019360 AACACTAATTGCTCTATTTTCTTTTTATTA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * *
4019390 AACATTGGTTGTTCTCTTCCCTTTTCAACA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* *
4019420 AACAAT-GTAT-CTCTCTT---TTTTCATCA
1 AACATTGGT-TGCTCTCTTCCCTTTTTATCA
* ** * * * * *
4019446 AACATT-GATAAT-TGTTTCATGTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * * * *
4019474 AATACTGGTAGCTCTGTT-CCTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* *
4019503 AACTTTGG-T--T-ACTTCCCTTTTTATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* * * *
4019529 AACA----CTGC-AT-GT--CTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* ** * * *
4019551 AAC-TATGGTTCCAGTTTTTCCTTTTCATCA
1 AACAT-TGGTTGCTCTCTTCCCTTTTTATCA
* * * * *
4019581 AACATTGGGTGTTATATTCCCTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* *
4019611 AACATTGGTTACTCTCTTCCCTTTTTATTA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* **
4019641 AACACTGGTTGCTCTCTTCTGTTTTCTA-CA
1 AACATTGGTTGCTCTCTTCCCTTTT-TATCA
* * * * * *
4019671 CACACTGGTTACTCTCTTTCCTTTTCATTA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
*
4019701 AACATTGGTTGCTCTCTT-CCTTTCTCATCA
1 AACATTGGTTGCTCTCTTCCCTTT-TTATCA
* * * * *
4019731 AACATT-ATGTGTTCTATTCCGTTTTCATCA
1 AACATTGGT-TGCTCTCTTCCCTTTTTATCA
* * ** * * *
4019761 AATACTGGTTATTCTCATCCCTTTTAATGA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
*** ** *
4019791 AATGGTGGTTGCTCTCTTCCCTTTCGATAA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
* *
4019821 AACACTGCG-TGCTCTCTTTCCTTTTTCATCAA
1 AACATTG-GTTGCTCTCTTCCCTTTTT-ATC-A
* * * * *
4019853 AAAATT-GTTGCCCTATT-TCTTTTTCATAA
1 AACATTGGTTGCTCTCTTCCCTTTTT-ATCA
** * * *
4019882 AACACTACG-TGTTCTCTTTCCTTTTGATCA
1 AACA-TTGGTTGCTCTCTTCCCTTTTTATCA
* * * * * *
4019912 AACGA-TGATTTCTCTATTTCCTATTCATCA
1 AAC-ATTGGTTGCTCTCTTCCCTTTTTATCA
* *
4019942 AACATTGGGTGCTCTCTTCCCTTTTCATCA
1 AACATTGGTTGCTCTCTTCCCTTTTTATCA
*
4019972 TACATT
1 AACATT
4019978 TTTTTAATTT
Statistics
Matches: 908, Mismatches: 274, Indels: 124
0.70 0.21 0.09
Matches are distributed among these distances:
22 12 0.01
23 1 0.00
24 1 0.00
25 6 0.01
26 31 0.03
27 2 0.00
28 36 0.04
29 90 0.10
30 678 0.75
31 46 0.05
32 5 0.01
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (30 bp):
AACATTGGTTGCTCTCTTCCCTTTTTATCA
Found at i:4020742 original size:13 final size:13
Alignment explanation
Indices: 4020724--4020756 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
4020714 TTCTATTTTC
4020724 TCTCTTTTATTGG
1 TCTCTTTTATTGG
4020737 TCTCTTTTATTGG
1 TCTCTTTTATTGG
4020750 TCTCTTT
1 TCTCTTT
4020757 ACGCCTTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.18, G:0.12, T:0.64
Consensus pattern (13 bp):
TCTCTTTTATTGG
Found at i:4021277 original size:30 final size:30
Alignment explanation
Indices: 4021205--4021500 Score: 187
Period size: 30 Copynumber: 9.9 Consensus size: 30
4021195 ACATGTGCTT
* * **
4021205 TCTTCCCTTTTTATCAAACTA-TGGTTGCAA
1 TCTTCCCTTTTCATCAAAC-ACTGGTTACTC
* *
4021235 TCTT-TCTTTTCATCAAACATTGAGTT-CTC
1 TCTTCCCTTTTCATCAAACACTG-GTTACTC
*
4021264 TCTTCCTTTTTCATCAAACACTGGTTGA-TC
1 TCTTCCCTTTTCATCAAACACTGGTT-ACTC
* *
4021294 TCTTCCAATTTT-ATCAAACATTGGTTACTC
1 TCTTCC-CTTTTCATCAAACACTGGTTACTC
* * *
4021324 TCTTCCCTTTTCATCAAATACTAGTTATTC
1 TCTTCCCTTTTCATCAAACACTGGTTACTC
* * * ** *
4021354 TATTCCTTTTTTCATGAAACACTGGTTGTTT
1 TCTTCC-CTTTTCATCAAACACTGGTTACTC
* *
4021385 TCTTCCCTTTTGATCAAACACTGCG-TGCTC
1 TCTTCCCTTTTCATCAAACACTG-GTTACTC
*
4021415 TCTTCCCTTTTCATCAAACAATGGTTGA-TC
1 TCTTCCCTTTTCATCAAACACTGGTT-ACTC
* ** * *
4021445 TATTTTCTTTTCATTAAACA-TCGCG-TGCTC
1 TCTTCCCTTTTCATCAAACACT-G-GTTACTC
* * *
4021475 TCTTTCATTTTCATTAAACACTGGTT
1 TCTTCCCTTTTCATCAAACACTGGTT
4021501 CTGCAAAAAG
Statistics
Matches: 211, Mismatches: 38, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
28 1 0.00
29 30 0.14
30 150 0.71
31 30 0.14
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.45
Consensus pattern (30 bp):
TCTTCCCTTTTCATCAAACACTGGTTACTC
Found at i:4021328 original size:60 final size:59
Alignment explanation
Indices: 4021205--4021502 Score: 209
Period size: 60 Copynumber: 5.0 Consensus size: 59
4021195 ACATGTGCTT
*
4021205 TCTTCCCTTTTTATCAAACTA-TGGTTGCAATCT-TT-C-TTTTCATCAAACATTGAGTTCTC
1 TCTTCCCTTTTCATCAAAC-ACTGGTTG--ATCTCTTCCATTTTCATCAAACATTG-GTTCTC
*
4021264 TCTTCCTTTTTCATCAAACACTGGTTGATCTCTTCCAATTTT-ATCAAACATTGGTTACTC
1 TCTTCCCTTTTCATCAAACACTGGTTGATCTCTTCC-ATTTTCATCAAACATTGGTT-CTC
* * * * * * * *
4021324 TCTTCCCTTTTCATCAAATACTAGTT-ATTCTATTCCTTTTTTCATGAAACACTGGTTGTTT
1 TCTTCCCTTTTCATCAAACACTGGTTGA-TCTCTTCC-ATTTTCATCAAACATTGGTT-CTC
* * * * *
4021385 TCTTCCCTTTTGATCAAACACTGCG-TGCTCTCTTCCCTTTTCATCAAACAATGGTTGATC
1 TCTTCCCTTTTCATCAAACACTG-GTTGATCTCTTCCATTTTCATCAAACATTGGTT-CTC
* ** * * * * *
4021445 TATTTTCTTTTCATTAAACA-TCGCG-TGCTCTCTTTCATTTTCATTAAACACTGGTTCT
1 TCTTCCCTTTTCATCAAACACT-G-GTTGATCTCTTCCATTTTCATCAAACATTGGTTCT
4021503 GCAAAAAGAA
Statistics
Matches: 195, Mismatches: 33, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
57 4 0.02
58 3 0.02
59 30 0.15
60 112 0.57
61 45 0.23
62 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.09, T:0.45
Consensus pattern (59 bp):
TCTTCCCTTTTCATCAAACACTGGTTGATCTCTTCCATTTTCATCAAACATTGGTTCTC
Found at i:4021447 original size:91 final size:90
Alignment explanation
Indices: 4021240--4021464 Score: 244
Period size: 91 Copynumber: 2.5 Consensus size: 90
4021230 TGCAATCTTT
* * *
4021240 CTTTTCATCAAACATTGAGTTCTCTCTTCC-TTTTTCATCAAACACTGGTTGATCTCTTCCAATT
1 CTTTTCATCAAACAATG-GTTATCTATTCCTTTTTTCATCAAACACTGGTTGATCTCTTCCAATT
*
4021304 TTATCAAACATTGGTTACTCTCTTCC
65 TTATCAAACACTGGTTACTCTCTTCC
* * * * * * *
4021330 CTTTTCATCAAATACTAGTTATTCTATTCCTTTTTTCATGAAACACTGGTTGTTTTCTTCC-CTT
1 CTTTTCATCAAACAATGGTTA-TCTATTCCTTTTTTCATCAAACACTGGTTGATCTCTTCCAATT
*
4021394 TTGATCAAACACTGCG-TGCTCTCTTCC
65 TT-ATCAAACACTG-GTTACTCTCTTCC
*
4021421 CTTTTCATCAAACAATGGTTGATCTATT--TTCTTTTCATTAAACA
1 CTTTTCATCAAACAATGGTT-ATCTATTCCTT-TTTTCATCAAACA
4021465 TCGCGTGCTC
Statistics
Matches: 114, Mismatches: 15, Indels: 12
0.81 0.11 0.09
Matches are distributed among these distances:
89 5 0.04
90 37 0.32
91 70 0.61
92 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.08, T:0.44
Consensus pattern (90 bp):
CTTTTCATCAAACAATGGTTATCTATTCCTTTTTTCATCAAACACTGGTTGATCTCTTCCAATTT
TATCAAACACTGGTTACTCTCTTCC
Found at i:4022025 original size:21 final size:20
Alignment explanation
Indices: 4021976--4022027 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
4021966 AAAAATGTAT
4021976 TAATA-ATAATTTTAATTTA
1 TAATATATAATTTTAATTTA
* * *
4021995 TTATATTATATTTTTATTTTAA
1 TAATA-TATAATTTTAATTT-A
4022017 TAATATATAAT
1 TAATATATAAT
4022028 AAATTATTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
19 4 0.16
21 16 0.64
22 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TAATATATAATTTTAATTTA
Found at i:4022104 original size:30 final size:30
Alignment explanation
Indices: 4022070--4022170 Score: 116
Period size: 30 Copynumber: 3.4 Consensus size: 30
4022060 CTCGCTTTTT
* *
4022070 TTTTCATCAAATATTAGGCGCTCTCTTCCA
1 TTTTCATCAAATATTAGGCGTTCTCTTCCC
* *
4022100 TTTTCATCAAATATTAGGTGTTCTCTCCCC
1 TTTTCATCAAATATTAGGCGTTCTCTTCCC
* *
4022130 TTTTCATTAAACATT--GCATGTTCTCTTCCC
1 TTTTCATCAAATATTAGGC--GTTCTCTTCCC
4022160 TTTTCATCAAA
1 TTTTCATCAAA
4022171 CATCGGTTGT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
28 1 0.02
30 59 0.98
ACGTcount: A:0.23, C:0.26, G:0.08, T:0.44
Consensus pattern (30 bp):
TTTTCATCAAATATTAGGCGTTCTCTTCCC
Found at i:4022182 original size:30 final size:29
Alignment explanation
Indices: 4022070--4022183 Score: 102
Period size: 30 Copynumber: 3.8 Consensus size: 29
4022060 CTCGCTTTTT
* * * *
4022070 TTTTCATCAAATATTAGGCGCTCTCTTCCA
1 TTTTCATCAAACA-TAGGTGTTCTCTTCCC
* *
4022100 TTTTCATCAAATATTAGGTGTTCTCTCCCC
1 TTTTCATCAAACA-TAGGTGTTCTCTTCCC
* * *
4022130 TTTTCATTAAACATTGCATGTTCTCTTCCC
1 TTTTCATCAAACATAG-GTGTTCTCTTCCC
*
4022160 TTTTCATCAAACATCGGTTGTTCT
1 TTTTCATCAAACATAGG-TGTTCT
4022184 AACAATGGTT
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 2 0.03
30 68 0.97
ACGTcount: A:0.21, C:0.25, G:0.10, T:0.44
Consensus pattern (29 bp):
TTTTCATCAAACATAGGTGTTCTCTTCCC
Found at i:4022230 original size:30 final size:29
Alignment explanation
Indices: 4022184--4023328 Score: 429
Period size: 30 Copynumber: 39.0 Consensus size: 29
4022174 CGGTTGTTCT
* * *
4022184 AACAATGGTTTCTCTCTTCACATTTCATCA
1 AACACTGGTTGCTCTCTTC-CTTTTCATCA
* **
4022214 AACACTGGTTGTTCTCTTCCCTTTTCGCCA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
* * *
4022244 AATA-TTGTGTGCTCTAC--CCTTTTCATAA
1 AACACTGGT-TGCTCT-CTTCCTTTTCATCA
* * *
4022272 AACATTGGATGCTCTCTTTCTTTTTCATCA
1 AACACTGGTTGCTCTC-TTCCTTTTCATCA
* ** * **
4022302 AACATTAATTACTCAATTCCATTTTCATCA
1 AACACTGGTTGCTCTCTTCC-TTTTCATCA
* *
4022332 AACACTGGGTGCTCTCTTACTTTTTCATCA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
* * * *
4022362 AACATTGATTGCGCTCTTCTTTTTTCATCA
1 AACACTGGTTGCTCTCTTC-CTTTTCATCA
* *
4022392 AACACAGGTTGGTCTCTTCTCTTTTCATCA
1 AACACTGGTTGCTCTCTTC-CTTTTCATCA
* * * * *
4022422 AACACTAGTTGTTATCTTCCCATTGCATCA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
*
4022452 AACACTGGTTGCTCTCTTTCCTTTTAATCA
1 AACACTGGTTGCTCTC-TTCCTTTTCATCA
* *
4022482 AACACTGGTTGCTTTATTCCTATTTCATCA
1 AACACTGGTTGCTCTCTTCCT-TTTCATCA
* * * * *
4022512 AACACTAGTTTCTTTCATTCATATTCATCA
1 AACACTGGTTGCTCTC-TTCCTTTTCATCA
*
4022542 AACA-TTG-TGCT-TCTT-CTATTT--TC-
1 AACACTGGTTGCTCTCTTCCT-TTTCATCA
** ** *
4022565 AA-ACTCATTAATATCTTCC---TCATCA
1 AACACTGGTTGCTCTCTTCCTTTTCATCA
* **
4022590 AACAATGGTTTTTCTCTTCTCTTTTCATCA
1 AACACTGGTTGCTCTCTTC-CTTTTCATCA
* * *
4022620 AATATTGCG-TGCTCT-TTCCTTTTTCATCG
1 AACACTG-GTTGCTCTCTTCC-TTTTCATCA
* * * *
4022649 AACACCGATTGCCCTTTTCCCTTTTCAT-A
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
* * * * * * *
4022678 AAAATTTGTTACCCTCCTCCCTTTTTATCA
1 AACACTGGTTGCTCT-CTTCCTTTTCATCA
* * *
4022708 AACAATGCG-TGCTCACTTCCCTTTTAATCA
1 AACACTG-GTTGCTCTCTT-CCTTTTCATCA
* ** **
4022738 AACATTGGTTATTAACTTCTCTTTTCATCA
1 AACACTGGTTGCTCTCTTC-CTTTTCATCA
* * * *
4022768 AACA-TTGTGTGCTCTCTTTTCTTTTTACCA
1 AACACTGGT-TGCTCTC-TTCCTTTTCATCA
** *
4022798 AACACTAATTGCTCTCTTTCCTTTTTATCA
1 AACACTGGTTGCTCTC-TTCCTTTTCATCA
* * *
4022828 AACATTGGTTGTTCTCTTCCCTTTTCAACA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
*
4022858 AACAAT-GTATGCTCTCTTCCCTTTTCATCA
1 AACACTGGT-TGCTCTCTT-CCTTTTCATCA
* * * **
4022888 AACATTGATAT--T-TGTTACCAGTTCATCA
1 AACACTGGT-TGCTCTCTT-CCTTTTCATCA
* * *
4022916 AATACTGGTAGCTCTTTTCACTTTTCATCA
1 AACACTGGTTGCTCTCTTC-CTTTTCATCA
* *
4022946 AACATTGGTTACT-TCTT-C----C-TCA
1 AACACTGGTTGCTCTCTTCCTTTTCATCA
** * * *
4022968 AACACTGCATGTTTTATTCCCTTTTCATCA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
* *
4022998 AACTA-TGGTTACAGT-TTTTCCTTTTCATCA
1 AAC-ACTGGTTGC--TCTCTTCCTTTTCATCA
* * *
4023028 AACATTGGGTGCTCTATTCCCTTTTCATCA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
* * * *
4023058 AACAATGGTTACTCTCTTCCCTTTTTATTA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
4023088 AACACTGGTTGCTCTCTTCCGTTTTCATCA
1 AACACTGGTTGCTCTCTTCC-TTTTCATCA
* * ** * * *
4023118 AATACTAGTTATTCTCCTCCCTTTTAATGA
1 AACACTGGTTGCTCT-CTTCCTTTTCATCA
*** *
4023148 AATGGTGGTTGCTCTCTTCCCTTTCGATCA
1 AACACTGGTTGCTCTCTTCCTTTTC-ATCA
*
4023178 AACACTGCG-TGCTCTCTTTCCATTTTCATTAA
1 AACACTG-GTTGCTCTC-TTCC-TTTTCA-TCA
* * * *
4023210 AAAAAT-GTTGCTCTATTTCTTTTTCATCA
1 AACACTGGTTGCTCT-CTTCCTTTTCATCA
4023239 AACACTACGTGTT-CTCT-TTCCTTTTCATCA
1 AACACT--G-GTTGCTCTCTTCCTTTTCATCA
* * * *
4023269 AACGA-TAGTTTCTCTATTTCCTATTCATCA
1 AAC-ACTGGTTGCTCT-CTTCCTTTTCATCA
* *
4023299 AACATTGGGTGCTCTCTTCCCTTTTCATCA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
4023329 TACATTTTTT
Statistics
Matches: 826, Mismatches: 208, Indels: 162
0.69 0.17 0.14
Matches are distributed among these distances:
22 13 0.02
23 7 0.01
24 6 0.01
25 8 0.01
26 15 0.02
27 8 0.01
28 44 0.05
29 93 0.11
30 569 0.69
31 45 0.05
32 15 0.02
33 3 0.00
ACGTcount: A:0.23, C:0.26, G:0.09, T:0.43
Consensus pattern (29 bp):
AACACTGGTTGCTCTCTTCCTTTTCATCA
Found at i:4023262 original size:121 final size:120
Alignment explanation
Indices: 4023037--4023326 Score: 282
Period size: 121 Copynumber: 2.4 Consensus size: 120
4023027 AAACATTGGG
* * * * * * *
4023037 TGCTCTATTCCCTTTTCATCAAACAATG-GTTACTCTCTTCCCTTTTTATT-AAACACTGGTTGC
1 TGCTCTATTCCCTATTCATCAAACACTGCG-TGCTCTCTTCCATTTTCATTAAAAAAAT-GTTGC
* * * * * *
4023100 TCTCTTCCGTTTTCATCAAATACTAGTTATTCTCCTCCCTTTTAATGAAATGGTGGT
64 TCTATTCCGTTTTCATCAAACACTAGTTATTCTCCTCCCTTTTAATCAAACGATAGT
*
4023157 TGCTCTCTTCCCT-TTCGATCAAACACTGCGTGCTCTCTTTCCATTTTCATTAAAAAAATGTTGC
1 TGCTCTATTCCCTATTC-ATCAAACACTGCGTGCTCTC-TTCCATTTTCATTAAAAAAATGTTGC
* * * * * *
4023221 TCTATTTCTTTTTCATCAAACACTACG-TGTTCTCTTTCCTTTTCATCAAACGATAGT
64 TCTATTCCGTTTTCATCAAACACTA-GTTATTCTCCTCCCTTTTAATCAAACGATAGT
* * * * *
4023278 TTCTCTATTTCCTATTCATCAAACATTGGGTGCTCTCTTCCCTTTTCAT
1 TGCTCTATTCCCTATTCATCAAACACTGCGTGCTCTCTTCCATTTTCAT
4023327 CATACATTTT
Statistics
Matches: 139, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
119 3 0.02
120 39 0.28
121 88 0.63
122 9 0.06
ACGTcount: A:0.21, C:0.26, G:0.10, T:0.43
Consensus pattern (120 bp):
TGCTCTATTCCCTATTCATCAAACACTGCGTGCTCTCTTCCATTTTCATTAAAAAAATGTTGCTC
TATTCCGTTTTCATCAAACACTAGTTATTCTCCTCCCTTTTAATCAAACGATAGT
Found at i:4024579 original size:30 final size:29
Alignment explanation
Indices: 4024540--4024815 Score: 164
Period size: 30 Copynumber: 9.6 Consensus size: 29
4024530 GGTTACTTTT
* * *
4024540 TTTTTATCAAACACTGCGTGCTTTCTTCCC
1 TTTTCATCAAACACTG-GTGCTCTCTTTCC
*
4024570 TTTTCATCAAATTA-TGGTTGCAATCT-TTTCC
1 TTTTCATCAAA-CACTGG-TGC--TCTCTTTCC
*
4024601 TTTTCATCAAACATTGAGTG--CTC-TTCC
1 TTTTCATCAAACACTG-GTGCTCTCTTTCC
*
4024628 TTTTCATCAAACA-TGGTTGATCTC-TTCC
1 TTTTCATCAAACACTGG-TGCTCTCTTTCC
* * ** *
4024656 TTTT--TCAAATACTAGTTAT-TCTATCC
1 TTTTCATCAAACACTGGTGCTCTCTTTCC
* * *
4024682 CTTTCAT-GAACACTGGTG-TTTCTTTCC
1 TTTTCATCAAACACTGGTGCTCTCTTTCC
* * *
4024709 -TTTGATCAAACAATGTGTGCTCTCTTCCC
1 TTTTCATCAAACACTG-GTGCTCTCTTTCC
* * *
4024738 TTTTCATCAAACAATGGTTGCTCTATTTTC
1 TTTTCATCAAACACTGG-TGCTCTCTTTCC
* *
4024768 TTTTCATCAAACATTGCGTGCTCTCTTTCA
1 TTTTCATCAAACACTG-GTGCTCTCTTTCC
*
4024798 TTTTCATTAAACACTGGT
1 TTTTCATCAAACACTGGT
4024816 TCTGTAAAAG
Statistics
Matches: 195, Mismatches: 30, Indels: 43
0.73 0.11 0.16
Matches are distributed among these distances:
25 3 0.02
26 25 0.13
27 40 0.21
28 15 0.08
29 11 0.06
30 77 0.39
31 21 0.11
32 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.44
Consensus pattern (29 bp):
TTTTCATCAAACACTGGTGCTCTCTTTCC
Found at i:4025392 original size:30 final size:30
Alignment explanation
Indices: 4025356--4025421 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
4025346 TAATAATATT
* * * * *
4025356 ATCAAACATTGGGTGCTCGCTTTCTTTTTC
1 ATCAAACACTAGGCGCTCGCTTCCATTTTC
*
4025386 ATCAAACACTAGGCGCTCTCTTCCATTTTC
1 ATCAAACACTAGGCGCTCGCTTCCATTTTC
4025416 ATCAAA
1 ATCAAA
4025422 TATTAAGTGT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.36
Consensus pattern (30 bp):
ATCAAACACTAGGCGCTCGCTTCCATTTTC
Found at i:4025762 original size:28 final size:29
Alignment explanation
Indices: 4025494--4026427 Score: 522
Period size: 30 Copynumber: 31.6 Consensus size: 29
4025484 CGGTTGCTCC
* * *
4025494 AACATTGGTTTCTCTCTTCACATTTCATCA
1 AACACTGGTTGCTCTCTTC-CTTTTCATCA
* **
4025524 AACACTGGTTGTTCTCTTCCTTTTCGCCA
1 AACACTGGTTGCTCTCTTCCTTTTCATCA
* * *
4025553 AATA-T-GTGTG-TCTC-TAC-TTTCATAA
1 AACACTGGT-TGCTCTCTTCCTTTTCATCA
* * *
4025578 AACATTGGGTGCTCTCTTTCTTTTTCATCA
1 AACACTGGTTGCTCTC-TTCCTTTTCATCA
* * * *
4025608 AACATTAGTTACTCTATTCCATTTTCATCA
1 AACACTGGTTGCTCTCTTCC-TTTTCATCA
* *
4025638 AACACTGGGTGCTCTCTTACTTTTTCATCA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
* * *
4025668 AACATTGATTGCGCTCTTCCTTTTTCATCA
1 AACACTGGTTGCTCTCTTCC-TTTTCATCA
* *
4025698 AACACAGGTTGGTCTCTTCTCTTTTCATCA
1 AACACTGGTTGCTCTCTTC-CTTTTCATCA
* * *
4025728 AACACTGGTTGCTATCTTCC-ATGCATCA
1 AACACTGGTTGCTCTCTTCCTTTTCATCA
*
4025756 AACACTGG-TGCTCTCTTTCCTTTTAATCA
1 AACACTGGTTGCTCTC-TTCCTTTTCATCA
*
4025785 AACACTGGTTGCTCTATTCCTTTTTCATCA
1 AACACTGGTTGCTCTCTTCC-TTTTCATCA
* * * *
4025815 AACACTGGTTTCTTTCTTTCATATTCATCA
1 AACACTGGTTGCTCTC-TTCCTTTTCATCA
* *
4025845 AACA-TTGTGTG-TCTCTTCTATTTTCATCA
1 AACACTGGT-TGCTCTCTTC-CTTTTCATCA
* ** * *
4025874 AACACTCGTTAATATTTTCCATTTTCATCA
1 AACACTGGTTGCTCTCTTCC-TTTTCATCA
* *
4025904 AACAATGGTTGTTCTCTTCTCTTTTCATCA
1 AACACTGGTTGCTCTCTTC-CTTTTCATCA
* *
4025934 AATA-TTGTGTGCTCT-TTCCTTTTTCATCA
1 AACACTGGT-TGCTCTCTTCC-TTTTCATCA
* * * * *
4025963 AACACCGATTGCTCTATTCCCTTTTTATAA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
* * * * * ** *
4025993 AAAAAT-ATTACACTCCACCCTTTCCATCA
1 AACACTGGTTGCTCT-CTTCCTTTTCATCA
* * *
4026022 AACATTGGTTGTTATCTTCCATTTTCATCA
1 AACACTGGTTGCTCTCTTCC-TTTTCATCA
* * *
4026052 AA-AATTGTGTGCTCTCTTTTCTTTTCATCA
1 AACACTGGT-TGCTCTC-TTCCTTTTCATCA
* * * *
4026082 AACACTAGTTGATCTCTTTCATTTTTATCA
1 AACACTGGTTGCTCTC-TTCCTTTTCATCA
* * * * *
4026112 AAAATTGGTTGTTCTCTTCCCTTTTTAACA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
*
4026142 AACAAT-GTATGCTC-CATTCCCTTTTCATCA
1 AACACTGGT-TGCTCTC-TT-CCTTTTCATCA
* * * *
4026172 AACATTGATAT--T-TTTTCCATGTTCATCA
1 AACACTGGT-TGCTCTCTTCC-TTTTCATCA
* * *
4026200 AATACTGGTAGCTCTTTTCCCTTTTCATCA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
* *
4026230 AACATTGGTTGATCTCTTCCATTTTCATCA
1 AACACTGGTTGCTCTCTTCC-TTTTCATCA
*
4026260 AACACTGGTTACTCTCTTCTCTTTTCATCA
1 AACACTGGTTGCTCTCTTC-CTTTTCATCA
* * ** * *
4026290 AATACTAGTTATTCTATTCCCTTTTCATGA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
* * *
4026320 AACACTGGTTGTTTTCTTCCCTTTTGATCA
1 AACACTGGTTGCTCTCTT-CCTTTTCATCA
*
4026350 AATACTGCG-TGCTCTCTTCCCTTTTCATCA
1 AACACTG-GTTGCTCTCTT-CCTTTTCATCA
* * *
4026380 AACAATAGTTGCTCTATTTCCTTTTCATCA
1 AACACTGGTTGCTCT-CTTCCTTTTCATCA
* *
4026410 AGCATTGCG-TGCTCTCTT
1 AACACTG-GTTGCTCTCTT
4026428 TTCTAGTGTA
Statistics
Matches: 693, Mismatches: 161, Indels: 101
0.73 0.17 0.11
Matches are distributed among these distances:
25 8 0.01
26 5 0.01
27 19 0.03
28 41 0.06
29 114 0.16
30 480 0.69
31 26 0.04
ACGTcount: A:0.23, C:0.25, G:0.09, T:0.43
Consensus pattern (29 bp):
AACACTGGTTGCTCTCTTCCTTTTCATCA
Found at i:4025842 original size:117 final size:118
Alignment explanation
Indices: 4025633--4025848 Score: 301
Period size: 117 Copynumber: 1.8 Consensus size: 118
4025623 ATTCCATTTT
* * * *
4025633 CATCAAACACTGGGTGCTCTCTTACTTTTTCATCAAACATTGATTGCGCTCTTCCTTTTTCATCA
1 CATCAAACACTGGGTGCTCTCTTACCTTTTAATCAAACACTGATTGCGCTATTCCTTTTTCATCA
* *
4025698 AACACAGGTTGGTCTCTTCTCTTTTCATCAAACACTGGTTGCTATCTTCCATG
66 AACACAGGTTGCTCTCTTCTCTATTCATCAAACACTGGTTGCTATCTTCCATG
* * *
4025751 CATCAAACACT-GGTGCTCTCTTTCCTTTTAATCAAACACTGGTTGCTCTATTCCTTTTTCATCA
1 CATCAAACACTGGGTGCTCTCTTACCTTTTAATCAAACACTGATTGCGCTATTCCTTTTTCATCA
* * *
4025815 AACACTGGTTTCTTTCTT-TCATATTCATCAAACA
66 AACACAGGTTGCTCTCTTCTC-TATTCATCAAACA
4025849 TTGTGTGTCT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
116 2 0.02
117 72 0.85
118 11 0.13
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.40
Consensus pattern (118 bp):
CATCAAACACTGGGTGCTCTCTTACCTTTTAATCAAACACTGATTGCGCTATTCCTTTTTCATCA
AACACAGGTTGCTCTCTTCTCTATTCATCAAACACTGGTTGCTATCTTCCATG
Found at i:4026116 original size:118 final size:118
Alignment explanation
Indices: 4025899--4026115 Score: 287
Period size: 118 Copynumber: 1.8 Consensus size: 118
4025889 TTTCCATTTT
* *
4025899 CATCAAACAATGGTTGTTCTCTTCTCTTTTCATCAAATATTGTGTGCTCTTTCCTTTTTCATCAA
1 CATCAAACAATGGTTGTTATCTTCTCTTTTCATCAAAAATTGTGTGCTCTTTCCTTTTTCATCAA
* * *
4025964 ACACCGATTGCTCTATTCCCTTTTTATAAAAAAATATTACACTCCACCCTTTC
66 ACACAGATTGATCTATTCCATTTTTATAAAAAAATATTACACTCCACCCTTTC
* *
4026017 CATCAAACATTGGTTGTTATCTTC-CATTTTCATCAAAAATTGTGTGCTCTCTT-TTCTTTTCAT
1 CATCAAACAATGGTTGTTATCTTCTC-TTTTCATCAAAAATTGTGTGCTCT-TTCCT-TTTTCAT
* * *
4026080 CAAACACTAG-TTGATCTCTTTCATTTTTATCAAAAA
63 CAAACAC-AGATTGATCTATTCCATTTTTATAAAAAA
4026116 TTGGTTGTTC
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
117 1 0.01
118 46 0.54
119 37 0.44
120 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.43
Consensus pattern (118 bp):
CATCAAACAATGGTTGTTATCTTCTCTTTTCATCAAAAATTGTGTGCTCTTTCCTTTTTCATCAA
ACACAGATTGATCTATTCCATTTTTATAAAAAAATATTACACTCCACCCTTTC
Found at i:4026231 original size:208 final size:206
Alignment explanation
Indices: 4025599--4026383 Score: 605
Period size: 208 Copynumber: 3.8 Consensus size: 206
4025589 CTCTCTTTCT
* ** * * * *
4025599 TTTTCATCAAACATTAGTTACTCTATTCCATTTTCATCAAACACTGGGTGCTCTCTTACT-TTTT
1 TTTTCATCAAACATTGGTTGTTATCTTCCATTTTCATCAAACATTGTGTGCTCTCTT-CTCTTTT
* *** * * *
4025663 CATCAAACA-TTGATTGCGCTCTTCCTTTTTCATCAAACACA-GGTTGGTCTCTTCTCTTTTCAT
65 CATCAAACACTAG-TTATTCT-TTCCATTTTCATCAAA-A-ATGGTTGTTCTCTTCCCTTTTCAT
* * * * * * * * *
4025726 CAAACACTG-GTTGCTATCTT-CC-ATGCATCAAACACTGGTGCTCTCT-TTCC-TTTTAATCAA
126 CAAATAATGTG-TGCT-CCTTCCCTTTTCATCAAACACCGAT--TCTCTATTCCATGTTCATCAA
* * *
4025786 ACACTGGTTGCTCTATTCCT
187 AAACTGGTAGCTCTATTCCC
* * * * *
4025806 TTTTCATCAAACACTGGTT-TCTTTCTTTCATATTCATCAAACATTGTGTG-TCTCTTCTATTTT
1 TTTTCATCAAACATTGGTTGT-TATCTTCCATTTTCATCAAACATTGTGTGCTCTCTTCTCTTTT
* *
4025869 CATCAAACACTCGTTAATAT-TTTCCATTTTCATCAAACAATGGTTGTTCTCTTCTCTTTTCATC
65 CATCAAACACTAGTT-AT-TCTTTCCATTTTCATCAAA-AATGGTTGTTCTCTTCCCTTTTCATC
* * * * * * * *
4025933 AAATATTGTGTGCTCTTTCCTTTTTCATCAAACACCGATTGCTCTATTCCCTTTTTATAAAAAAA
127 AAATAATGTGTGCTCCTTCCCTTTTCATCAAACACCGATT-CTCTATTCCATGTTCATCAAAAAC
** * *
4025998 TATTACACTCCA--CCC
191 TGGTA-GCTCTATTCCC
* * *
4026013 TTTCCATCAAACATTGGTTGTTATCTTCCATTTTCATCAAAAATTGTGTGCTCTCTTTTCTTTTC
1 TTTTCATCAAACATTGGTTGTTATCTTCCATTTTCATCAAACATTGTGTGCTCTCTTCTCTTTTC
* * *
4026078 ATCAAACACTAGTTGATCTCTTT-CATTTTTATCAAAAATTGGTTGTTCTCTTCCCTTTTTAACA
66 ATCAAACACTAGTT-AT-TCTTTCCATTTTCATCAAAAA-TGGTTGTTCTCTTCCCTTTTCATCA
* * ** * *
4026142 AACAATGTATGCTCCATTCCCTTTTCATCAAACATTGATAT-T-TTTTCCATGTTCATCAAATAC
128 AATAATGTGTGCTCC-TTCCCTTTTCATCAAACACCGAT-TCTCTATTCCATGTTCATCAAAAAC
*
4026205 TGGTAGCTCTTTTCCC
191 TGGTAGCTCTATTCCC
* * * *
4026221 TTTTCATCAAACATTGGTTGATCTCTTCCATTTTCATCAAACACTG-GTTACTCTCTTCTCTTTT
1 TTTTCATCAAACATTGGTTGTTATCTTCCATTTTCATCAAACATTGTG-TGCTCTCTTCTCTTTT
* * * * * *
4026285 CATCAAATACTAGTTATTCTATTCCCTTTTCATGAAACACTGGTTGTTTTCTTCCCTTTTGATCA
65 CATCAAACACTAGTTATTCT-TTCCATTTTCATCAAA-AATGGTTGTTCTCTTCCCTTTTCATCA
* *
4026350 AATACTGCGTGCTCTCTTCCCTTTTCATCAAACA
128 AATAATGTGTGCTC-CTTCCCTTTTCATCAAACA
4026384 ATAGTTGCTC
Statistics
Matches: 465, Mismatches: 87, Indels: 51
0.77 0.14 0.08
Matches are distributed among these distances:
205 6 0.01
206 81 0.17
207 129 0.28
208 219 0.47
209 29 0.06
210 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.09, T:0.43
Consensus pattern (206 bp):
TTTTCATCAAACATTGGTTGTTATCTTCCATTTTCATCAAACATTGTGTGCTCTCTTCTCTTTTC
ATCAAACACTAGTTATTCTTTCCATTTTCATCAAAAATGGTTGTTCTCTTCCCTTTTCATCAAAT
AATGTGTGCTCCTTCCCTTTTCATCAAACACCGATTCTCTATTCCATGTTCATCAAAAACTGGTA
GCTCTATTCCC
Found at i:4026802 original size:30 final size:30
Alignment explanation
Indices: 4026766--4026904 Score: 125
Period size: 30 Copynumber: 4.6 Consensus size: 30
4026756 TAATAATATT
* * *
4026766 ATCAAACATTGGGTGCACGCTTCCTTTTTC
1 ATCAAACATTGGGTGCTCTCTTCCATTTTC
* * **
4026796 ATCAAACACTAGCCGCTCTCTTCCATTTTC
1 ATCAAACATTGGGTGCTCTCTTCCATTTTC
* * *
4026826 ATCAAATATTGGGTGTTCTCTCCCATTTTC
1 ATCAAACATTGGGTGCTCTCTTCCATTTTC
* * ** * *
4026856 ATTAAATATTGCATGTTCTCTTCCTTTTTC
1 ATCAAACATTGGGTGCTCTCTTCCATTTTC
*
4026886 ATCAAACATTGGTTGCTCT
1 ATCAAACATTGGGTGCTCT
4026905 AACACTGGTT
Statistics
Matches: 85, Mismatches: 24, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.41
Consensus pattern (30 bp):
ATCAAACATTGGGTGCTCTCTTCCATTTTC
Found at i:4027046 original size:30 final size:30
Alignment explanation
Indices: 4027012--4028133 Score: 566
Period size: 30 Copynumber: 37.6 Consensus size: 30
4027002 TGTGTTCTAC
* *
4027012 CCTTTTCATTAAACATTGGGTGCTCTCTTT
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
* * *
4027042 CCTTTTCATCAAACATTAGTTACTCT-ATT
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
* * * *
4027071 CCATTTACATCAAACATTGGGTGCTTTCTTA
1 CC-TTTTCATCAAACATTGGTTGCTCTCTTT
* * *
4027102 CTTTTTCATCAAACACTGATTGCTCTC-TT
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
*** * * *
4027131 CCTTTTTCATCAAACACAAGTTGGTATCTTC
1 CC-TTTTCATCAAACATTGGTTGCTCTCTTT
* * *
4027162 CCTTTCCATCAAACACTGGTTGCTATC-TT
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
* * *
4027191 CTCATTGCATCAAACACTGGTTGCTCTCTTT
1 C-CTTTTCATCAAACATTGGTTGCTCTCTTT
* * *
4027222 CCTTTTAATCAAACACTGGTTGCTCTATTT
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
* * *
4027252 CTTTTTCATCAAATATT-GTGTGTTCTCTTAT
1 CCTTTTCATCAAACATTGGT-TGCTCTCTT-T
* * ** ** *
4027283 -ATTTTCATCAAACACTCATTAATATC-TT
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
* *
4027311 CCATTTTCATCAAACAATGGTTGTTCTC-TT
1 CC-TTTTCATCAAACATTGGTTGCTCTCTTT
*
4027341 CTCTTTTCATCAAATATTGCG-TGCT-T-TTT
1 C-CTTTTCATCAAACATTG-GTTGCTCTCTTT
* ** * *
4027370 CTTTTTTCATCAAACACCGATTACTCT-TTT
1 C-CTTTTCATCAAACATTGGTTGCTCTCTTT
* * * * * *
4027400 CCCTTTTTATAAAAAATT-GTTGCCCTCCTC
1 -CCTTTTCATCAAACATTGGTTGCTCTCTTT
* * *
4027430 CCTTTTTATCAAACATTGCG-TGCTCACTTC
1 CCTTTTCATCAAACATTG-GTTGCTCTCTTT
* ** **
4027460 CCTTTAT-ATCAAACATTGATTATTAACTTAT
1 CCTTT-TCATCAAACATTGGTTGCTCTCTT-T
*
4027491 -CTTTTCATCAAAAATT-GTGTGCTCTCTTT
1 CCTTTTCATCAAACATTGGT-TGCTCTCTTT
* * * *
4027520 CGTTTTTATCAAACATTGGTTGTTCTCTTC
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
* * *
4027550 CCTTTTCAACAAACAAT-GTATGCTCTCTTC
1 CCTTTTCATCAAACATTGGT-TGCTCTCTTT
* *
4027580 CCTTTTCATCAAAAATTGATAT--T-T-TTT
1 CCTTTTCATCAAACATTGGT-TGCTCTCTTT
* * * *
4027607 CCCTGTTCATCAAATAGTGGTAGCTCT-TTT
1 -CCTTTTCATCAAACATTGGTTGCTCTCTTT
*
4027637 CCCTTTTCATCAAACATTGGTTACT-TC-TT
1 -CCTTTTCATCAAACATTGGTTGCTCTCTTT
** * ** * * *
4027666 CCATTTTTTTCAAACACTGCATGTTTTCTTC
1 CC-TTTTCATCAAACATTGGTTGCTCTCTTT
* *
4027697 CCTTTTCATCAAAC-TATGGTTGCACTTTTT
1 CCTTTTCATCAAACAT-TGGTTGCTCTCTTT
* * *
4027727 CCTTTTCATCAAACATTGGGTGCTCTATTC
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
* * *
4027757 CCTTTTCATCAAGCATTGGTTACTCTCTTC
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
* * *
4027787 CCTTTTCATTAAACACTGGTTGTTCTC-TT
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
* * * * *
4027816 CCATTTTTATCAAACACTGATTACTCT-ATT
1 CC-TTTTCATCAAACATTGGTTGCTCTCTTT
*
4027846 CTCTTTTCATTAAACATTGGTTGCTCTC-TT
1 C-CTTTTCATCAAACATTGGTTGCTCTCTTT
* *
4027876 CCTTTCTCATCAAACATT-ATGTGTTCTC-TT
1 CCTTT-TCATCAAACATTGGT-TGCTCTCTTT
* * * * * *
4027906 CCATTTTCATCAAATACTGGTTGTTTTCCTC
1 CC-TTTTCATCAAACATTGGTTGCTCTCTTT
** * *
4027937 CCTTTTCAT-AAACGGTGGTTGCTCTATTC
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
* **
4027966 CCTTTTGATCAAACACTACG-TGCTCTCTTT
1 CCTTTTCATCAAACA-TTGGTTGCTCTCTTT
* * * ** * *
4027996 CTTTTTTCATCAAAAAATGGTTATTATATTT
1 C-CTTTTCATCAAACATTGGTTGCTCTCTTT
** * *
4028027 CCTTTTCATCAAACACTACG-TGTTCTATTT
1 CCTTTTCATCAAACA-TTGGTTGCTCTCTTT
* *
4028057 CCTTTTCATCAAAC-TCTGGTTTCTCTATTT
1 CCTTTTCATCAAACAT-TGGTTGCTCTCTTT
* * *
4028087 CCTATTCATCAAACATTGGGTGCTCTCTTC
1 CCTTTTCATCAAACATTGGTTGCTCTCTTT
*
4028117 CCTTTTCATCATACATT
1 CCTTTTCATCAAACATT
4028134 TTTTTAATTT
Statistics
Matches: 825, Mismatches: 211, Indels: 112
0.72 0.18 0.10
Matches are distributed among these distances:
27 2 0.00
28 21 0.03
29 107 0.13
30 642 0.78
31 53 0.06
ACGTcount: A:0.22, C:0.25, G:0.09, T:0.44
Consensus pattern (30 bp):
CCTTTTCATCAAACATTGGTTGCTCTCTTT
Found at i:4028901 original size:13 final size:14
Alignment explanation
Indices: 4028867--4028936 Score: 54
Period size: 13 Copynumber: 4.9 Consensus size: 14
4028857 CATCAAACTA
4028867 TTGCTCTCTTCAGT
1 TTGCTCTCTTCAGT
*
4028881 TTTCTCTCTT-AGT
1 TTGCTCTCTTCAGT
* *
4028894 TTGGTCTCTTTACGCAT
1 TTGCTCTCTTCA-G--T
*
4028911 TGTGCTCTCTTCCG-
1 T-TGCTCTCTTCAGT
4028925 TTGCTCTCTTCA
1 TTGCTCTCTTCA
4028937 AACTGGTTGC
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
13 21 0.48
14 11 0.25
15 1 0.02
17 3 0.07
18 8 0.18
ACGTcount: A:0.07, C:0.29, G:0.14, T:0.50
Consensus pattern (14 bp):
TTGCTCTCTTCAGT
Found at i:4029511 original size:30 final size:29
Alignment explanation
Indices: 4029339--4029504 Score: 158
Period size: 30 Copynumber: 5.6 Consensus size: 29
4029329 AGTTACTTCT
* *
4029339 TTCCTTTTTATCAAACACTAT-G-TGATTTC
1 TTCCTTTTTATCAAACA-T-TGGTTGCTCTC
*
4029368 TTCCCTTCTTATCAAAC-TATGGTTGCTCTC
1 TT-CCTTTTTATCAAACAT-TGGTTGCTCTC
* **
4029398 TTTCCTTTTCATCAAACATTGGGAGCTCTC
1 -TTCCTTTTTATCAAACATTGGTTGCTCTC
**
4029428 TTCCTTTTTCATCAAACATTGGGAGCTCTC
1 TTCCTTTTT-ATCAAACATTGGTTGCTCTC
*
4029458 TTCTTTTTTCATCAAACATTGGTTGCTCTC
1 TTCCTTTTT-ATCAAACATTGGTTGCTCTC
4029488 TTCCATTTTTATCAAAC
1 TTCC-TTTTTATCAAAC
4029505 CCTGGTTCCG
Statistics
Matches: 118, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
28 3 0.03
29 11 0.09
30 96 0.81
31 8 0.07
ACGTcount: A:0.20, C:0.25, G:0.10, T:0.45
Consensus pattern (29 bp):
TTCCTTTTTATCAAACATTGGTTGCTCTC
Found at i:4029939 original size:19 final size:18
Alignment explanation
Indices: 4029915--4029963 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
4029905 ACTTAAAATA
4029915 ATATTATTTTATATATTTT
1 ATATTATTTTAT-TATTTT
* *
4029934 ATATTAATATATTATTTT
1 ATATTATTTTATTATTTT
*
4029952 AGTATCATTTTA
1 A-TATTATTTTA
4029964 ATAAAAATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (18 bp):
ATATTATTTTATTATTTT
Found at i:4029997 original size:16 final size:16
Alignment explanation
Indices: 4029976--4030022 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
4029966 AAAAATATTA
4029976 ATTATAATTATAATTT
1 ATTATAATTATAATTT
*
4029992 ATTAT-ATTATATTTT
1 ATTATAATTATAATTT
*
4030007 TTTAATAATATATAAT
1 ATT-ATAAT-TATAAT
4030023 AAATTATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 11 0.44
16 7 0.28
17 2 0.08
18 5 0.20
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTATAATTATAATTT
Found at i:4030018 original size:21 final size:21
Alignment explanation
Indices: 4029994--4030043 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
4029984 TATAATTTAT
** *
4029994 TATATTATATTTTTTTAATAA
1 TATATTATAAATTATTAATAA
*
4030015 TATATAATAAATTATTAATAA
1 TATATTATAAATTATTAATAA
4030036 TATTATTA
1 TA-TATTA
4030044 AACACTGAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TATATTATAAATTATTAATAA
Found at i:4030042 original size:12 final size:12
Alignment explanation
Indices: 4030008--4030044 Score: 53
Period size: 10 Copynumber: 3.3 Consensus size: 12
4029998 TTATATTTTT
4030008 TTAATAATA-TA
1 TTAATAATATTA
4030019 -TAATAA-ATTA
1 TTAATAATATTA
4030029 TTAATAATATTA
1 TTAATAATATTA
4030041 TTAA
1 TTAA
4030045 ACACTGAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
9 1 0.04
10 8 0.35
11 6 0.26
12 8 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
TTAATAATATTA
Found at i:4030093 original size:30 final size:30
Alignment explanation
Indices: 4030059--4030443 Score: 194
Period size: 30 Copynumber: 12.6 Consensus size: 30
4030049 TGAGTGATCG
4030059 CTTCCATTTTCATCAAACATTGGTTGTTCT
1 CTTCCATTTTCATCAAACATTGGTTGTTCT
* * *** * *
4030089 CTTCCTTTCTTTTTATCAAACACCAGATGCTCT
1 CTTCC---ATTTTCATCAAACATTGGTTGTTCT
4030122 CTTCCATTTTCATCAAACATTTGG-TGTTCT
1 CTTCCATTTTCATCAAACA-TTGGTTGTTCT
* * * **
4030152 CTCCCATTTTCATTAAATATTGCATGTTCT
1 CTTCCATTTTCATCAAACATTGGTTGTTCT
*
4030182 CTTCCCTTTTCATCAAACATTTCACTGGTT-TCTCT
1 CTTCCATTTTCATCAAACA--T---TGGTTGT-TCT
*
4030217 CTT-CATTTTTCATCAAACACTGGTTGTTCT
1 CTTCCA-TTTTCATCAAACATTGGTTGTTCT
* *
4030247 CTTCCCTTTTCATTAAACATT--TTGTGCTCT
1 CTTCCATTTTCATCAAACATTGGTTGT--TCT
* ** * *
4030277 ATTACC-TTTTCGCCAAATATT-G-TGTGCT
1 CTT-CCATTTTCATCAAACATTGGTTGTTCT
* * * * * * *
4030305 CTACCCTTTTCATAAAATATTGGGTGCTCA
1 CTTCCATTTTCATCAAACATTGGTTGTTCT
* * **
4030335 CTTTCC-TTTTCATCAAATATTAGTTACTCT
1 C-TTCCATTTTCATCAAACATTGGTTGTTCT
* * * *
4030365 ATTCCATTTTCATCAAACACTGGGTGCTCT
1 CTTCCATTTTCATCAAACATTGGTTGTTCT
* * * * *
4030395 CTTCCTTTTTTATCAAACACTGATTGCTCT
1 CTTCCATTTTCATCAAACATTGGTTGTTCT
*
4030425 CTTCCTTTTTCATCAAACA
1 CTTCCATTTTCATCAAACA
4030444 CATGTTATAT
Statistics
Matches: 272, Mismatches: 60, Indels: 46
0.72 0.16 0.12
Matches are distributed among these distances:
27 2 0.01
28 19 0.07
29 8 0.03
30 187 0.69
31 8 0.03
32 1 0.00
33 23 0.08
34 2 0.01
35 22 0.08
ACGTcount: A:0.21, C:0.26, G:0.08, T:0.45
Consensus pattern (30 bp):
CTTCCATTTTCATCAAACATTGGTTGTTCT
Found at i:4030246 original size:65 final size:61
Alignment explanation
Indices: 4030059--4030270 Score: 175
Period size: 65 Copynumber: 3.4 Consensus size: 61
4030049 TGAGTGATCG
* * * *
4030059 CTTCCATTTTCATCAAACA--TTGGTTGTTCTCTTCCTTTC-TTTTTATCAAACACCAG-ATGCT
1 CTTCCCTTTTCATCAAACATTTTGG-TGTTCTC-TCC---CATTTTCATCAAACA-CTGCATGTT
4030120 CT
60 CT
* * * *
4030122 CTTCCATTTTCATCAAACA-TTTGGTGTTCTCTCCCATTTTCATTAAATATTGCATGTTCT
1 CTTCCCTTTTCATCAAACATTTTGGTGTTCTCTCCCATTTTCATCAAACACTGCATGTTCT
* **
4030182 CTTCCCTTTTCATCAAACATTTCACTGGT-TTCTCTCTTCATTTTTCATCAAACACTGGTTGTTC
1 CTTCCCTTTTCATCAAACATTT---TGGTGTTCTCTC-CCA-TTTTCATCAAACACTGCATGTTC
4030246 T
61 T
*
4030247 CTTCCCTTTTCATTAAACATTTTG
1 CTTCCCTTTTCATCAAACATTTTG
4030271 TGCTCTATTA
Statistics
Matches: 126, Mismatches: 14, Indels: 19
0.79 0.09 0.12
Matches are distributed among these distances:
59 2 0.02
60 34 0.27
61 2 0.02
62 5 0.04
63 33 0.26
64 10 0.08
65 40 0.32
ACGTcount: A:0.20, C:0.26, G:0.08, T:0.46
Consensus pattern (61 bp):
CTTCCCTTTTCATCAAACATTTTGGTGTTCTCTCCCATTTTCATCAAACACTGCATGTTCT
Found at i:4030332 original size:58 final size:57
Alignment explanation
Indices: 4030245--4030403 Score: 142
Period size: 58 Copynumber: 2.7 Consensus size: 57
4030235 ACTGGTTGTT
* * ** * *
4030245 CTCTTCCCTTTTCATTAAACATTTTGTGCTCTATTACCTTTTCGCCAAATATT-GTGTG
1 CTCTACCCTTTTCATAAAACATTGGGTGCTCTATT-CCTTTTCACCAAATATTAGT-TA
* *
4030303 CTCTACCCTTTTCATAAAATATTGGGTGCTC-ACTTTCCTTTTCATCAAATATTAGTTA
1 CTCTACCCTTTTCATAAAACATTGGGTGCTCTA--TTCCTTTTCACCAAATATTAGTTA
* * * *
4030361 CTCTATTCCATTTTCATCAAACACTGGGTGCTCTCTTCCTTTT
1 CTCTA--CCCTTTTCATAAAACATTGGGTGCTCTATTCCTTTT
4030404 TTATCAAACA
Statistics
Matches: 82, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
57 1 0.01
58 47 0.57
59 12 0.15
60 22 0.27
ACGTcount: A:0.21, C:0.25, G:0.09, T:0.45
Consensus pattern (57 bp):
CTCTACCCTTTTCATAAAACATTGGGTGCTCTATTCCTTTTCACCAAATATTAGTTA
Found at i:4032147 original size:12 final size:12
Alignment explanation
Indices: 4032125--4032159 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
4032115 AAAAACATTT
*
4032125 GAAAATGATTTTG
1 GAAAAT-ATTTTA
4032138 GAAAATATTTTA
1 GAAAATATTTTA
4032150 GAAAATATTT
1 GAAAATATTT
4032160 ACGCTCCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 15 0.71
13 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.40
Consensus pattern (12 bp):
GAAAATATTTTA
Done.