Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001279.1 Hibiscus syriacus cultivar Beakdansim tig00002511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6984689
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 21 of 29
Found at i:4855696 original size:20 final size:20
Alignment explanation
Indices: 4855648--4855700 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
4855638 GATTTTCCAG
*
4855648 AATTGCAACGCGAATATGAA
1 AATTGCAACGCGAACATGAA
**
4855668 AATCACAACGCGAACAT-ATA
1 AATTGCAACGCGAACATGA-A
4855688 AATTGCAACGCGA
1 AATTGCAACGCGA
4855701 TTCTGACTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.45, C:0.21, G:0.17, T:0.17
Consensus pattern (20 bp):
AATTGCAACGCGAACATGAA
Found at i:4855732 original size:20 final size:20
Alignment explanation
Indices: 4855709--4855873 Score: 146
Period size: 20 Copynumber: 8.4 Consensus size: 20
4855699 GATTCTGACT
*
4855709 ATCGCAACGAGTATCCGTAA
1 ATCGCAACGAGTATACGTAA
4855729 ATCG---C-A--ATACGTAAA
1 ATCGCAACGAGTATACGT-AA
* *
4855744 ATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGTATACGTAA
* *
4855764 ATCGCAACAAGAATACGTAA
1 ATCGCAACGAGTATACGTAA
*
4855784 ATCGCAACGCGTAT-CTGTAA
1 ATCGCAACGAGTATAC-GTAA
*
4855804 ATCGCAACGAGAATACGTAA
1 ATCGCAACGAGTATACGTAA
**
4855824 ATCGCAACGACAATACGTAAA
1 ATCGCAACGAGTATACGT-AA
* * *
4855845 ATTGCAACGCGTATGCGTAA
1 ATCGCAACGAGTATACGTAA
4855865 ATCGCAACG
1 ATCGCAACG
4855874 CGATTTTTAA
Statistics
Matches: 116, Mismatches: 19, Indels: 20
0.75 0.12 0.13
Matches are distributed among these distances:
14 5 0.04
15 6 0.05
16 1 0.01
17 1 0.01
18 1 0.01
19 1 0.01
20 80 0.69
21 21 0.18
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.19
Consensus pattern (20 bp):
ATCGCAACGAGTATACGTAA
Found at i:4855791 original size:40 final size:40
Alignment explanation
Indices: 4855734--4855832 Score: 171
Period size: 40 Copynumber: 2.5 Consensus size: 40
4855724 CGTAAATCGC
4855734 AATACGTAAAATCGCAACGCGTATCCGTAAATCGCAACAAG
1 AATACGT-AAATCGCAACGCGTATCCGTAAATCGCAACAAG
* *
4855775 AATACGTAAATCGCAACGCGTATCTGTAAATCGCAACGAG
1 AATACGTAAATCGCAACGCGTATCCGTAAATCGCAACAAG
4855815 AATACGTAAATCGCAACG
1 AATACGTAAATCGCAACG
4855833 ACAATACGTA
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
40 49 0.88
41 7 0.12
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.18
Consensus pattern (40 bp):
AATACGTAAATCGCAACGCGTATCCGTAAATCGCAACAAG
Found at i:4855826 original size:60 final size:61
Alignment explanation
Indices: 4855742--4855873 Score: 187
Period size: 60 Copynumber: 2.2 Consensus size: 61
4855732 GCAATACGTA
* * * *
4855742 AAATCGCAACGCGTATCCGTAAATCGCAACAAGAATACGT-AAATCGCAACGCGTAT-CTGT
1 AAATCGCAACGAGAATACGTAAATCGCAACAACAATACGTAAAATCGCAACGCGTATGC-GT
* *
4855802 AAATCGCAACGAGAATACGTAAATCGCAACGACAATACGTAAAATTGCAACGCGTATGCGT
1 AAATCGCAACGAGAATACGTAAATCGCAACAACAATACGTAAAATCGCAACGCGTATGCGT
4855863 AAATCGCAACG
1 AAATCGCAACG
4855874 CGATTTTTAA
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
60 35 0.55
61 28 0.44
62 1 0.02
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.18
Consensus pattern (61 bp):
AAATCGCAACGAGAATACGTAAATCGCAACAACAATACGTAAAATCGCAACGCGTATGCGT
Found at i:4855874 original size:20 final size:20
Alignment explanation
Indices: 4855734--4855876 Score: 155
Period size: 20 Copynumber: 7.0 Consensus size: 20
4855724 CGTAAATCGC
4855734 AATACGTAAAATCGCAACGCG
1 AATACGT-AAATCGCAACGCG
* * **
4855755 TATCCGTAAATCGCAACAAG
1 AATACGTAAATCGCAACGCG
4855775 AATACGTAAATCGCAACGCG
1 AATACGTAAATCGCAACGCG
* *
4855795 TAT-CTGTAAATCGCAACGAG
1 AATAC-GTAAATCGCAACGCG
4855815 AATACGTAAATCGCAACGAC-
1 AATACGTAAATCGCAACG-CG
*
4855835 AATACGTAAAATTGCAACGCG
1 AATACGT-AAATCGCAACGCG
* *
4855856 TATGCGTAAATCGCAACGCG
1 AATACGTAAATCGCAACGCG
4855876 A
1 A
4855877 TTTTTAAAGC
Statistics
Matches: 100, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
19 1 0.01
20 78 0.78
21 21 0.21
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.18
Consensus pattern (20 bp):
AATACGTAAATCGCAACGCG
Found at i:4856495 original size:19 final size:19
Alignment explanation
Indices: 4856471--4856512 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
4856461 CGCAACGAGA
4856471 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
4856490 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
4856509 GAAA
1 GAAA
4856513 CCAATGCGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.50, C:0.19, G:0.21, T:0.10
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:4856556 original size:20 final size:20
Alignment explanation
Indices: 4856517--4856570 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
4856507 GCGAAACCAA
4856517 TGCGATTTTCATTT-CGCGT
1 TGCGATTTTCATTTCCGCGT
*
4856536 TGCGATATTCATTTCCGCGT
1 TGCGATTTTCATTTCCGCGT
4856556 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
4856571 AACTAAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.41
20 19 0.59
ACGTcount: A:0.13, C:0.22, G:0.19, T:0.46
Consensus pattern (20 bp):
TGCGATTTTCATTTCCGCGT
Found at i:4858452 original size:21 final size:19
Alignment explanation
Indices: 4858428--4858500 Score: 51
Period size: 21 Copynumber: 3.7 Consensus size: 19
4858418 GTGACGGGAT
4858428 AGGTGATGGCTCTCGTTGTAG
1 AGGTGATGGCTCT-G-TGTAG
* * *
4858449 AGGTGTATAG-TCTGGTCTATC
1 AGGTG-ATGGCTCT-GTGTA-G
*
4858470 AGGTGATGGCTCTGGGT-G
1 AGGTGATGGCTCTGTGTAG
4858488 AGGTGATGGCTCT
1 AGGTGATGGCTCT
4858501 CGAAGTGGCA
Statistics
Matches: 41, Mismatches: 8, Indels: 9
0.71 0.14 0.16
Matches are distributed among these distances:
18 13 0.32
20 8 0.20
21 17 0.41
22 3 0.07
ACGTcount: A:0.15, C:0.14, G:0.38, T:0.33
Consensus pattern (19 bp):
AGGTGATGGCTCTGTGTAG
Found at i:4858878 original size:21 final size:22
Alignment explanation
Indices: 4858836--4858878 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
4858826 AATAACAAAT
*
4858836 ATTAGTAATTGTTAAATAATTA
1 ATTAGTAATTGTTAAAAAATTA
4858858 ATTA-TAATT-TTAAAAACATTA
1 ATTAGTAATTGTTAAAAA-ATTA
4858879 TATAAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 6 0.32
21 9 0.47
22 4 0.21
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (22 bp):
ATTAGTAATTGTTAAAAAATTA
Found at i:4859776 original size:19 final size:19
Alignment explanation
Indices: 4859725--4859827 Score: 99
Period size: 19 Copynumber: 5.6 Consensus size: 19
4859715 TCTTTTGGTT
4859725 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
**
4859744 GAAAATGACTATCGCAACGC
1 G-AAATGAAAATCGCAACGC
* *
4859764 GATATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
* *
4859783 GAAATTAAAATCGTAA--C
1 GAAATGAAAATCGCAACGC
*
4859800 G--A-GATAATCGCAACGC
1 GAAATGAAAATCGCAACGC
4859816 GAAATGAAAATC
1 GAAATGAAAATC
4859828 ACAATGCGAT
Statistics
Matches: 64, Mismatches: 14, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
14 8 0.12
15 1 0.02
16 2 0.03
17 1 0.02
18 1 0.02
19 34 0.53
20 17 0.27
ACGTcount: A:0.47, C:0.18, G:0.19, T:0.16
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:4859880 original size:33 final size:33
Alignment explanation
Indices: 4859843--4859912 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
4859833 GCGATTTTAG
4859843 TTTCGCGTTGCGATTATCTCGTTGCAATTTTCA
1 TTTCGCGTTGCGATTATCTCGTTGCAATTTTCA
* *
4859876 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTATCTCGTTGCAATTTTCA
4859909 TTTC
1 TTTC
4859913 TCTCATTGCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.19, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTATCTCGTTGCAATTTTCA
Found at i:4859915 original size:21 final size:21
Alignment explanation
Indices: 4859889--4859947 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
4859879 CGCGTTGCGA
4859889 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
* **
4859910 TTCTCTCATTGCGATAGTCAT
1 TTCTCTCGTTGCGATTTTCAT
4859931 TT-TCGT-GTTGCGATTTT
1 TTCTC-TCGTTGCGATTTT
4859948 AAGTTTAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 10 0.32
21 21 0.68
ACGTcount: A:0.12, C:0.20, G:0.17, T:0.51
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:4860524 original size:20 final size:20
Alignment explanation
Indices: 4860499--4860712 Score: 148
Period size: 20 Copynumber: 10.6 Consensus size: 20
4860489 CTTTAAAAAT
4860499 CGCGTTGCGATTTACGAATA
1 CGCGTTGCGATTTACGAATA
**
4860519 CGCGTTGCGATTTTACGTGT-
1 CGCGTTGCGA-TTTACGAATA
* *
4860539 TGTCATTGCGATTTACGAATA
1 CG-CGTTGCGATTTACGAATA
* * * *
4860560 CGCATTGCGATTTATGTATT
1 CGCGTTGCGATTTACGAATA
* *
4860580 CTCGTTGTGATTTAC-AGATA
1 CGCGTTGCGATTTACGA-ATA
* * *
4860600 CGCGTTGTGATTTACGTATT
1 CGCGTTGCGATTTACGAATA
* *
4860620 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGAATA
*
4860640 CGCGTTGCGATTTTACGTATTA
1 CGCGTTGCGA-TTTACG-AATA
* *
4860662 TCGC--TGCAATTTACGGATA
1 -CGCGTTGCGATTTACGAATA
* *
4860681 CGTGTTGCGATTTTACGGATA
1 CGCGTTGCGA-TTTACGAATA
*
4860702 CTCGTTGCGAT
1 CGCGTTGCGAT
4860713 AGTCAAAATC
Statistics
Matches: 150, Mismatches: 33, Indels: 22
0.73 0.16 0.11
Matches are distributed among these distances:
18 2 0.01
19 2 0.01
20 98 0.65
21 43 0.29
22 2 0.01
23 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (20 bp):
CGCGTTGCGATTTACGAATA
Found at i:4860560 original size:41 final size:41
Alignment explanation
Indices: 4860501--4860712 Score: 259
Period size: 41 Copynumber: 5.2 Consensus size: 41
4860491 TTAAAAATCG
* *
4860501 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTGTTGT
1 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTCT
* * *
4860542 CATTGCGATTTACGAATACGCATTGCGA-TTTATGTATTCT
1 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTCT
* *
4860582 CGTTGTGATTTAC-AGATACGCGTTGTGA-TTTACGTATTCT
1 CGTTGCGATTTACGA-ATACGCGTTGCGATTTTACGTATTCT
* *
4860622 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTAT
1 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTCT
* * * * * *
4860663 CGCTGCAATTTACGGATACGTGTTGCGATTTTACGGATACT
1 CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTCT
4860704 CGTTGCGAT
1 CGTTGCGAT
4860713 AGTCAAAATC
Statistics
Matches: 146, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 66 0.45
41 79 0.54
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (41 bp):
CGTTGCGATTTACGAATACGCGTTGCGATTTTACGTATTCT
Found at i:4860744 original size:20 final size:20
Alignment explanation
Indices: 4860721--4860773 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
4860711 ATAGTCAAAA
*
4860721 TCGCGTTGCGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
4860741 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
4860761 TCGCGTTGCGATT
1 TCGCGTTGCGATT
4860774 CTGTAAAGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 1 0.03
20 30 0.97
ACGTcount: A:0.13, C:0.19, G:0.25, T:0.43
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:4862473 original size:10 final size:10
Alignment explanation
Indices: 4862458--4862551 Score: 55
Period size: 10 Copynumber: 9.1 Consensus size: 10
4862448 CATTTAAATG
4862458 ATAAACAAAC
1 ATAAACAAAC
*
4862468 ATAAACGAAC
1 ATAAACAAAC
* *
4862478 GTAAAGAAAC
1 ATAAACAAAC
*
4862488 ACAAACAAAC
1 ATAAACAAAC
* *
4862498 GTAAAGAAAC
1 ATAAACAAAC
*
4862508 ACAAACGAACGAAC
1 ATAAAC--A--AAC
*
4862522 ATAAACGAAC
1 ATAAACAAAC
*
4862532 ATAAAAAAAC
1 ATAAACAAAC
*
4862542 A-ACACAAAC
1 ATAAACAAAC
4862551 A
1 A
4862552 CTCGAATACA
Statistics
Matches: 61, Mismatches: 19, Indels: 9
0.69 0.21 0.10
Matches are distributed among these distances:
9 7 0.11
10 45 0.74
12 1 0.02
14 8 0.13
ACGTcount: A:0.65, C:0.20, G:0.09, T:0.06
Consensus pattern (10 bp):
ATAAACAAAC
Found at i:4862527 original size:20 final size:20
Alignment explanation
Indices: 4862459--4862518 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
4862449 ATTTAAATGA
* *
4862459 TAAACAAACATAAACGAACG
1 TAAAGAAACACAAACGAACG
*
4862479 TAAAGAAACACAAACAAACG
1 TAAAGAAACACAAACGAACG
4862499 TAAAGAAACACAAACGAACG
1 TAAAGAAACACAAACGAACG
4862519 AACATAAACG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.62, C:0.20, G:0.12, T:0.07
Consensus pattern (20 bp):
TAAAGAAACACAAACGAACG
Found at i:4870429 original size:24 final size:24
Alignment explanation
Indices: 4870376--4870422 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
4870366 AACTCAAAAA
4870376 AAAAATTAGAAGCTCGATTGAAGC
1 AAAAATTAGAAGCTCGATTGAAGC
* *
4870400 ATAAAATTCG-AGCTTGATTGAAG
1 A-AAAATTAGAAGCTCGATTGAAG
4870423 TGAAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAATTAGAAGCTCGATTGAAGC
Found at i:4870430 original size:25 final size:25
Alignment explanation
Indices: 4870375--4870431 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
4870365 GAACTCAAAA
4870375 AAAAAATTAGAAGCTCGATTGAAGC
1 AAAAAATTAGAAGCTCGATTGAAGC
* * * *
4870400 ATAAAATTCG-AGCTTGATTGAAGTG
1 AAAAAATTAGAAGCTCGATTGAAG-C
4870425 AAAAAAT
1 AAAAAAT
4870432 AGTTCACTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 12 0.46
25 14 0.54
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (25 bp):
AAAAAATTAGAAGCTCGATTGAAGC
Found at i:4872672 original size:45 final size:45
Alignment explanation
Indices: 4872620--4872767 Score: 172
Period size: 45 Copynumber: 3.3 Consensus size: 45
4872610 TAATCAAAAT
* * * *
4872620 CTTTTGATTATTGGGTTGTCAAAAGTAAAATGAAAGGATTGGTTC
1 CTTTTGATTATTGGGTTGTCAAAATTAAAATAAAATGATTAGTTC
*
4872665 CTTTTGATTATTGGGTTG-CTAAAATTAAAATAAAATGATTAGTTG
1 CTTTTGATTATTGGGTTGTC-AAAATTAAAATAAAATGATTAGTTC
* * * * * *
4872710 TTTTTTATTATGGGGTTCTTAAAATTAAAATCAAATGATTAGTTC
1 CTTTTGATTATTGGGTTGTCAAAATTAAAATAAAATGATTAGTTC
*
4872755 CTTTCGATTATTG
1 CTTTTGATTATTG
4872768 AGTCATTAAA
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
44 1 0.01
45 84 0.99
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (45 bp):
CTTTTGATTATTGGGTTGTCAAAATTAAAATAAAATGATTAGTTC
Found at i:4873104 original size:58 final size:58
Alignment explanation
Indices: 4872965--4873119 Score: 213
Period size: 58 Copynumber: 2.7 Consensus size: 58
4872955 TTTGTAAGAA
* * * * * *
4872965 AAATAAATAGTTAAATTTATTTTATTAAGAATCTTGACTTATTTTATCTTTTAAAAGG
1 AAATAAATTGTTAAATTTATTTTCTTGAGAATCTTGAATGATTCTATCTTTTAAAAGG
* *
4873023 AAATAAATTATCAAATTTATTTTCTTGAGAATCTTGAATGATTCTATCTTTTAAAAGG
1 AAATAAATTGTTAAATTTATTTTCTTGAGAATCTTGAATGATTCTATCTTTTAAAAGG
*
4873081 AAATAAATTGTTAAACTTATTTTCTTG-GCAATCTTGAAT
1 AAATAAATTGTTAAATTTATTTTCTTGAG-AATCTTGAAT
4873120 AAAGAAATAA
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
57 1 0.01
58 84 0.99
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.45
Consensus pattern (58 bp):
AAATAAATTGTTAAATTTATTTTCTTGAGAATCTTGAATGATTCTATCTTTTAAAAGG
Found at i:4873185 original size:100 final size:100
Alignment explanation
Indices: 4873022--4873218 Score: 263
Period size: 100 Copynumber: 2.0 Consensus size: 100
4873012 CTTTTAAAAG
* * *
4873022 GAAATAAATTATCAAATTTATTTTCTTGAGAATCTTGAATGATTCTATCTTTTAAAAGGAAATAA
1 GAAATAAATTATCAAATTTATTTTCTGGAGAATATTGAATGATTCTATCTTTTAAAAGAAAATAA
*
4873087 ATTGTTAAACTTATTTTCTTGGCAATCTTGAATAAA
66 ATTGTTAAACTTATTTTCTTAG-AATCTTGAATAAA
** * *
4873123 GAAATAAATTATTGAATTTACTTTT-TGGA-AATATTTAATGATTGTATCTTTTAAAAGAAAATA
1 GAAATAAATTATCAAATTTA-TTTTCTGGAGAATATTGAATGATTCTATCTTTTAAAAGAAAATA
* * *
4873186 AATTGTTTAATTTATTTTTTTAGAATCTTGAAT
65 AATTGTTAAACTTATTTTCTTAGAATCTTGAAT
4873219 GATTCTATTT
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
99 10 0.12
100 49 0.58
101 21 0.25
102 4 0.05
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.45
Consensus pattern (100 bp):
GAAATAAATTATCAAATTTATTTTCTGGAGAATATTGAATGATTCTATCTTTTAAAAGAAAATAA
ATTGTTAAACTTATTTTCTTAGAATCTTGAATAAA
Found at i:4873256 original size:58 final size:56
Alignment explanation
Indices: 4873171--4873360 Score: 170
Period size: 58 Copynumber: 3.3 Consensus size: 56
4873161 TGATTGTATC
* * * *
4873171 TTTTAAAAGA-AAAT-AAATTGTTTAATTTATTTTTTTAGAATCTTGAATGATTCTA
1 TTTTAAAAAAGAAATAAAATT-TTAAATTTATTTTTTAAGAATCTTCAATGATTCTA
* * * *
4873226 TTTTGAAAAAAATAAATAAAATTTTAAATTTATTTCTTAAGAATCTTTAATGATTTTA
1 TTTT--AAAAAAGAAATAAAATTTTAAATTTATTTTTTAAGAATCTTCAATGATTCTA
* * * * *
4873284 TCTTTTAAAAAGAAATAAACA-ATTAAATTTATTTTCTTCATAATCTTCAATTATTCTA
1 T-TTTAAAAAAGAAATAAA-ATTTTAAATTTATTTT-TTAAGAATCTTCAATGATTCTA
*
4873342 TTTTATAAAAGAAAATAAA
1 TTTTAAAAAAG-AAATAAA
4873361 TCGTCAAAAT
Statistics
Matches: 110, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
55 4 0.04
57 37 0.34
58 61 0.55
59 8 0.07
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (56 bp):
TTTTAAAAAAGAAATAAAATTTTAAATTTATTTTTTAAGAATCTTCAATGATTCTA
Found at i:4873256 original size:115 final size:116
Alignment explanation
Indices: 4873124--4873361 Score: 265
Period size: 115 Copynumber: 2.1 Consensus size: 116
4873114 TTGAATAAAG
* *
4873124 AAATAAATTATTGAATTTACTTT-TT-GGAAATATTTAATGATTGTATCTTTT-AAAAGAAAATA
1 AAATAAATTATTAAATTTA-TTTCTTAAG-AATATTTAATGATTGTATCTTTTAAAAAG-AAATA
*** * * *
4873186 AATTGTTTAATTTATTTT-TTTAGAATCTTGAATGATTCTATTTTGAAAAAAAT
63 AACAATTAAATTTATTTTCTTCAGAATCTTCAATGATTCTATTTTGAAAAAAAT
* *
4873239 AAATAAAATT-TTAAATTTATTTCTTAAGAATCTTTAATGATTTTATCTTTTAAAAAGAAATAAA
1 AAAT-AAATTATTAAATTTATTTCTTAAGAATATTTAATGATTGTATCTTTTAAAAAGAAATAAA
* * *
4873303 CAATTAAATTTATTTTCTTCATAATCTTCAATTATTCTATTTT-ATAAAAGA-
65 CAATTAAATTTATTTTCTTCAGAATCTTCAATGATTCTATTTTGA-AAAAAAT
4873354 AAATAAAT
1 AAATAAAT
4873362 CGTCAAAATT
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
114 7 0.07
115 59 0.57
116 38 0.37
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.46
Consensus pattern (116 bp):
AAATAAATTATTAAATTTATTTCTTAAGAATATTTAATGATTGTATCTTTTAAAAAGAAATAAAC
AATTAAATTTATTTTCTTCAGAATCTTCAATGATTCTATTTTGAAAAAAAT
Found at i:4876559 original size:19 final size:20
Alignment explanation
Indices: 4876535--4876579 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
4876525 CAAAATGACC
*
4876535 CAATTTC-ACATTCTAACAT
1 CAATTTCAACACTCTAACAT
4876554 CAATTTCAACACTCTAACAT
1 CAATTTCAACACTCTAACAT
*
4876574 AAATTT
1 CAATTT
4876580 TCAGCATAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (20 bp):
CAATTTCAACACTCTAACAT
Found at i:4877694 original size:30 final size:30
Alignment explanation
Indices: 4877660--4877726 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 30
4877650 CCAAATACAT
4877660 AACTTTTAAAAATTA-TATGTTTGGTCCCTA
1 AACTTTTAAAAATTACTAT-TTTGGTCCCTA
*
4877690 AACTTTTGAAAATTACTATTTTGGTCCCTA
1 AACTTTTAAAAATTACTATTTTGGTCCCTA
4877720 AACTTTT
1 AACTTTT
4877727 CCAATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
30 32 0.91
31 3 0.09
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.45
Consensus pattern (30 bp):
AACTTTTAAAAATTACTATTTTGGTCCCTA
Found at i:4881709 original size:20 final size:20
Alignment explanation
Indices: 4881684--4881729 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
4881674 ATAGTTGTAG
*
4881684 GGGTATCGATACCT-TAGGAA
1 GGGTATCGATA-CTATAGAAA
4881704 GGGTATCGATACTATAGAAA
1 GGGTATCGATACTATAGAAA
4881724 GGGTAT
1 GGGTAT
4881730 TGACATTGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (20 bp):
GGGTATCGATACTATAGAAA
Found at i:4885623 original size:19 final size:19
Alignment explanation
Indices: 4885581--4885624 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
4885571 CAAAATGACC
* *
4885581 CAATTTCACATTCTAACAT
1 CAATTTCACACTCAAACAT
4885600 CAATTTCAACACTCAAACAT
1 CAATTTC-ACACTCAAACAT
4885620 -AATTT
1 CAATTT
4885625 TTCAGTATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.41, C:0.25, G:0.00, T:0.34
Consensus pattern (19 bp):
CAATTTCACACTCAAACAT
Found at i:4891776 original size:17 final size:17
Alignment explanation
Indices: 4891750--4891783 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4891740 TTATCAACCT
4891750 AAAATATGACATTTTAG
1 AAAATATGACATTTTAG
* *
4891767 AAAATTTGACTTTTTAG
1 AAAATATGACATTTTAG
4891784 TCAAAATCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (17 bp):
AAAATATGACATTTTAG
Found at i:4904703 original size:408 final size:407
Alignment explanation
Indices: 4903948--4904766 Score: 1557
Period size: 408 Copynumber: 2.0 Consensus size: 407
4903938 GCGTTGGGGC
* **
4903948 ACTTATGACATCGCCGATGACTAAAATTGCTCCAAAAATTTCAAAATATTAGGTCTCATGATTTT
1 ACTTATGACATCGCCGATGACTAAAATCGCTCCAAAAATTTCAAAATAGAAGGTCTCATGATTTT
*
4904013 AAGTCACTTCTCGAAATTGACAGATGTTTGTATACTAACTCCTAACTTCTTAAAACTTAACAATT
66 AAGTCACTTCTCGAAATTGACAGAAGTTTGTATACTAACTCCTAACTTCTTAAAACTTAACAATT
4904078 TGGTCTCCAAAAAAAATAATTAATTTGTAATTTAACTTAGAAATTAAGGGTGTGACAACTTTTCC
131 TGGTCTCCAAAAAAAATAATTAATTTGTAATTTAACTTAGAAATTAAGGGTGTGACAACTTTTCC
* *
4904143 CTCCTTAAAAGAAATTTTATCCTTGAAATTTTTTCCAAGTCAAAGAAATTTAGAAACCGAGTTTT
196 CTCCTTAAAAGAAATTTTATCCTCGAAATTTTTCCCAAGTCAAAGAAATTTAGAAACCGAGTTTT
*
4904208 CATTAGTTATTCACTATCTTCAAGTAGCTCTTACATGACTGTGATTCATCCATTGAACCTTAACC
261 CATCAGTTATTCACTATCTTCAAGTAGCTCTTACATGACTGTGATTCATCCATTGAACCTTAACC
*
4904273 ATTAAAATACTTTGACTAGCTTGAACTCTTCTTTATTATAATCCCAAAATCTGAATAGAATTCTC
326 ATTAAAATACTTTGACTAGCTTGAACTCTTCCTTATTATAATCCCAAAATCTGAATAGAATTCTC
4904338 CTTATAGAACCAATCAG
391 CTTATAGAACCAATCAG
4904355 TACTTATGACATCGCCGATGACTAAAATCGCTCCAAAAATTTCAAAATAGAAGGTCTCATGATTT
1 -ACTTATGACATCGCCGATGACTAAAATCGCTCCAAAAATTTCAAAATAGAAGGTCTCATGATTT
4904420 TAAGTCACTTCTCGAAATTGACAGAAGTTTGTATACTAACTCCTAACTTCTTAAAACTTAACAAT
65 TAAGTCACTTCTCGAAATTGACAGAAGTTTGTATACTAACTCCTAACTTCTTAAAACTTAACAAT
4904485 TTGGTCTCCAAAAAAAATAATTAATTTGTAATTTAACTTAGAAATTAAGGGTGTGACAACTTTTC
130 TTGGTCTCCAAAAAAAATAATTAATTTGTAATTTAACTTAGAAATTAAGGGTGTGACAACTTTTC
4904550 CCTCCTTAAAAGAAATTTTATCCTCGAAATTTTTCCCAAGTCAAAGAAATTTAGAAACCGAGTTT
195 CCTCCTTAAAAGAAATTTTATCCTCGAAATTTTTCCCAAGTCAAAGAAATTTAGAAACCGAGTTT
4904615 TCATCAGTTATTCACTATCTTCAAGTAGCTCTTACATGACTGTGATTCATCCATTGAACCTTAAC
260 TCATCAGTTATTCACTATCTTCAAGTAGCTCTTACATGACTGTGATTCATCCATTGAACCTTAAC
4904680 CATTAAAATACTTTGACTAGCTTGAACTCTTCCTTATTATAATCCCAAAATCTGAATAGAATTCT
325 CATTAAAATACTTTGACTAGCTTGAACTCTTCCTTATTATAATCCCAAAATCTGAATAGAATTCT
4904745 CCTTATAGAACCAATCAG
390 CCTTATAGAACCAATCAG
4904763 ACTT
1 ACTT
4904767 TAATTACCAA
Statistics
Matches: 403, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
407 4 0.01
408 399 0.99
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (407 bp):
ACTTATGACATCGCCGATGACTAAAATCGCTCCAAAAATTTCAAAATAGAAGGTCTCATGATTTT
AAGTCACTTCTCGAAATTGACAGAAGTTTGTATACTAACTCCTAACTTCTTAAAACTTAACAATT
TGGTCTCCAAAAAAAATAATTAATTTGTAATTTAACTTAGAAATTAAGGGTGTGACAACTTTTCC
CTCCTTAAAAGAAATTTTATCCTCGAAATTTTTCCCAAGTCAAAGAAATTTAGAAACCGAGTTTT
CATCAGTTATTCACTATCTTCAAGTAGCTCTTACATGACTGTGATTCATCCATTGAACCTTAACC
ATTAAAATACTTTGACTAGCTTGAACTCTTCCTTATTATAATCCCAAAATCTGAATAGAATTCTC
CTTATAGAACCAATCAG
Found at i:4914066 original size:18 final size:17
Alignment explanation
Indices: 4914045--4914078 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
4914035 TATAAATCGT
*
4914045 ATTAATATAAGATTTATA
1 ATTAAAATAA-ATTTATA
4914063 ATTAAAATAAATTTAT
1 ATTAAAATAAATTTAT
4914079 TGTTATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
ATTAAAATAAATTTATA
Found at i:4914148 original size:19 final size:19
Alignment explanation
Indices: 4914124--4914170 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
4914114 TTCATACTTA
* * *
4914124 ATTTTATAATTTTATATTT
1 ATTTTAAAATATTAAATTT
4914143 ATTTTAAAATATTAAATTT
1 ATTTTAAAATATTAAATTT
*
4914162 AATTTAAAA
1 ATTTTAAAA
4914171 ATATAAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTTAAAATATTAAATTT
Found at i:4914171 original size:20 final size:20
Alignment explanation
Indices: 4914139--4914239 Score: 60
Period size: 20 Copynumber: 4.5 Consensus size: 20
4914129 ATAATTTTAT
*
4914139 ATTT-ATTTTAAAATATTAA
1 ATTTAATTTAAAAATATTAA
*
4914158 ATTTAATTTAAAAATATAAAA
1 ATTTAATTTAAAAATAT-TAA
4914179 ATATTAAATTTAGTATGAAAAATATTAA
1 AT-TT-AA--T--T-T-AAAAATATTAA
* *
4914207 ATTAAATTTAATAATATTAA
1 ATTTAATTTAAAAATATTAA
4914227 ATATTAAATTTAA
1 AT-TT-AATTTAA
4914240 TTATAAATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 21
0.70 0.07 0.23
Matches are distributed among these distances:
19 4 0.06
20 23 0.36
21 6 0.09
22 10 0.16
23 2 0.03
24 1 0.02
25 1 0.02
26 2 0.03
27 2 0.03
28 5 0.08
29 8 0.12
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
ATTTAATTTAAAAATATTAA
Found at i:4914177 original size:19 final size:19
Alignment explanation
Indices: 4914174--4914228 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
4914164 TTTAAAAATA
4914174 TAAAAATATTAAATTTAGTAT
1 TAAAAATATTAAATTTA-T-T
* *
4914195 GAAAAATATTAAATTAAATT
1 TAAAAATATTAAATT-TATT
*
4914215 TAATAATATTAAAT
1 TAAAAATATTAAAT
4914229 ATTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 13 0.45
21 15 0.52
22 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (19 bp):
TAAAAATATTAAATTTATT
Found at i:4914235 original size:22 final size:20
Alignment explanation
Indices: 4914199--4914240 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
4914189 TAGTATGAAA
4914199 AATATTAAATTAAATTTAAT
1 AATATTAAATTAAATTTAAT
4914219 AATATTAAATATTAAATTTAAT
1 AATATT-AA-ATTAAATTTAAT
4914241 TATAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.30
21 2 0.10
22 12 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AATATTAAATTAAATTTAAT
Found at i:4914246 original size:19 final size:21
Alignment explanation
Indices: 4914200--4914249 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
4914190 AGTATGAAAA
4914200 ATATT-AA-ATTAAATTTAAT
1 ATATTAAATATTAAATTTAAT
4914219 AATATTAAATATTAAATTTAAT
1 -ATATTAAATATTAAATTTAAT
4914241 -TA-TAAATAT
1 ATATTAAATAT
4914250 AAAAATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.25
20 7 0.25
21 2 0.07
22 12 0.43
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
ATATTAAATATTAAATTTAAT
Found at i:4914255 original size:27 final size:26
Alignment explanation
Indices: 4914148--4914261 Score: 87
Period size: 27 Copynumber: 4.4 Consensus size: 26
4914138 TATTTATTTT
* *
4914148 AAAATATTAAATTTAATTTAAAAATA
1 AAAATATTAAATTAAATTTAATAATA
*
4914174 TAAAA-A-T--ATTAAATTTAGT-ATGA
1 -AAAATATTAAATTAAATTTAATAAT-A
4914197 AAAATATTAAATTAAATTTAATAATA
1 AAAATATTAAATTAAATTTAATAATA
* *
4914223 TTAAATATTAAATTTAATTATAA-ATATA
1 -AAAATATTAAATTAAATT-TAATA-ATA
*
4914251 AAAATAATAAA
1 AAAATATTAAA
4914262 CTTATTTTTA
Statistics
Matches: 70, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
22 6 0.09
23 11 0.16
24 1 0.01
25 1 0.01
26 13 0.19
27 32 0.46
28 6 0.09
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (26 bp):
AAAATATTAAATTAAATTTAATAATA
Found at i:4926166 original size:37 final size:37
Alignment explanation
Indices: 4926116--4926198 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 37
4926106 GAAATGATCC
*
4926116 ATGTGGGGCATTTTGAACGCT-CACATCAGTATGAAAA
1 ATGTGGGGCATTTTGAACG-TGCACATCAGCATGAAAA
4926153 ATGTGGGGCATTTTGAACGTGCACATCAGCATGAAAA
1 ATGTGGGGCATTTTGAACGTGCACATCAGCATGAAAA
4926190 ATGTTGGGG
1 ATG-TGGGG
4926199 TTCAGACATA
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 37 0.86
38 5 0.12
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (37 bp):
ATGTGGGGCATTTTGAACGTGCACATCAGCATGAAAA
Found at i:4927877 original size:40 final size:42
Alignment explanation
Indices: 4927774--4927888 Score: 135
Period size: 42 Copynumber: 2.8 Consensus size: 42
4927764 CCCAAATTTG
* * * * *
4927774 TAAATTCTTAGGGTCATCTGTCAGTCTTTCGAGCATGATGCT
1 TAAAATCTTAGGGTCATCTGTTAGTCTTTTGAGCAAGATGCA
*
4927816 TAAAACCTTAGGGTCATCTGTTAGTCTTTTGAGCAAGATG-A
1 TAAAATCTTAGGGTCATCTGTTAGTCTTTTGAGCAAGATGCA
* * *
4927857 T-AAGTCTTAGGGTCATCTGTTAGACCTTTGAG
1 TAAAATCTTAGGGTCATCTGTTAGTCTTTTGAG
4927889 TAGGATGTTT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 27 0.43
41 1 0.02
42 35 0.56
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.37
Consensus pattern (42 bp):
TAAAATCTTAGGGTCATCTGTTAGTCTTTTGAGCAAGATGCA
Found at i:4928506 original size:249 final size:252
Alignment explanation
Indices: 4927925--4928541 Score: 893
Period size: 260 Copynumber: 2.4 Consensus size: 252
4927915 TGAAAATGGG
* *
4927925 AAAGCGATTTTCAAAGTTTCTTACCCAATAAATTATTTCCCAAATTTGTAAATCCTTAGGGTTAT
1 AAAGCGATTTTCAAAGTTTCTTACCCAGTAAATTATTTCCCAAATTTGTAAATCCTTAGGGTAAT
* *
4927990 CTGTCAGTCTTTCGAGCATGATGCTTAAAACTTTAGGGTCATCTGTTAGTATTTTGAGCAAGATG
66 CTGTCAGTCTTTCGAGCATGATGCTTAAAACCTTA-GGTCATCTGTTAGTATTTTAAGCAAGATG
4928055 ATAAGTCCTTAGGGCCATCCGTCAAACCTTTGGGTAGGATGTTTACACATGATTTTCACATGAAA
130 ATAAGTCCTTAGGGCCATCCGTCAAACCTTTGGGTAGGATGTTT----ATGA---TCACATGAAA
* * *
4928120 ATGGGAAAGCGATTTTCAAAGTTTCTCGTTTAATGTTCAAGATAATGAAATTTGTAAAAAATAAG
188 ATGGGAAAGCGATTTTCAAAGTTTCTCATTTAATGTTCAAGAAAATGAAATTTGTAAAAAATAAA
*
4928185 AAAGCGGTTTTCAAAGTTTCTTACCCAGTAAATTATTTCCCAAATTTGTAAATCCTTAGGGTAAT
1 AAAGCGATTTTCAAAGTTTCTTACCCAGTAAATTATTTCCCAAATTTGTAAATCCTTAGGGTAAT
* * *
4928250 CTGTCAGTCTTTCGAGCATGATACTTAAAACCTTATGGTCATTTGTTAGTCTTTTAAGCAAGATG
66 CTGTCAGTCTTTCGAGCATGATGCTTAAAACCTTA-GGTCATCTGTTAGTATTTTAAGCAAGATG
* * *
4928315 ATAAGTTCTTAGGGCCATCCGTTAGACCTTTGGGTAGGATG-TT-T-A-CACATGAAAATGGGAA
130 ATAAGTCCTTAGGGCCATCCGTCAAACCTTTGGGTAGGATGTTTATGATCACATGAAAATGGGAA
* * *
4928376 AGCGGTTTTCAAAGTTTCTCATTTAATGTTCAAGAAAATGAAATTCT-TGAAAAGTAAA
195 AGCGATTTTCAAAGTTTCTCATTTAATGTTCAAGAAAATGAAATT-TGTAAAAAATAAA
* * * *
4928434 AAAGCAATTTCCAAAGTTTCTTACCTAGTAAATTATTTCCCAAATTTGTAAATCCTTAGGGTCAT
1 AAAGCGATTTTCAAAGTTTCTTACCCAGTAAATTATTTCCCAAATTTGTAAATCCTTAGGGTAAT
* * *
4928499 ATGTCAGTCTTTCGAGCATGATGTTTAAATCCTTAGGTCATCT
66 CTGTCAGTCTTTCGAGCATGATGCTTAAAACCTTAGGTCATCT
4928542 ATCAGTTTTT
Statistics
Matches: 328, Mismatches: 28, Indels: 14
0.89 0.08 0.04
Matches are distributed among these distances:
248 7 0.02
249 157 0.48
250 1 0.00
253 1 0.00
254 1 0.00
259 2 0.01
260 159 0.48
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (252 bp):
AAAGCGATTTTCAAAGTTTCTTACCCAGTAAATTATTTCCCAAATTTGTAAATCCTTAGGGTAAT
CTGTCAGTCTTTCGAGCATGATGCTTAAAACCTTAGGTCATCTGTTAGTATTTTAAGCAAGATGA
TAAGTCCTTAGGGCCATCCGTCAAACCTTTGGGTAGGATGTTTATGATCACATGAAAATGGGAAA
GCGATTTTCAAAGTTTCTCATTTAATGTTCAAGAAAATGAAATTTGTAAAAAATAAA
Found at i:4928553 original size:41 final size:41
Alignment explanation
Indices: 4928482--4928580 Score: 162
Period size: 41 Copynumber: 2.4 Consensus size: 41
4928472 CCCAAATTTG
*
4928482 TAAATCCTTAGGGTCATATGTCAGTCTTTCGAGCATGATGTT
1 TAAATCCTTA-GGTCATATATCAGTCTTTCGAGCATGATGTT
* *
4928524 TAAATCCTTAGGTCATCTATCAGTTTTTCGAGCATGATGTT
1 TAAATCCTTAGGTCATATATCAGTCTTTCGAGCATGATGTT
4928565 TAAATCCTTAGGTCAT
1 TAAATCCTTAGGTCAT
4928581 TTGTTAATCT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 44 0.81
42 10 0.19
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.39
Consensus pattern (41 bp):
TAAATCCTTAGGTCATATATCAGTCTTTCGAGCATGATGTT
Found at i:4928598 original size:41 final size:41
Alignment explanation
Indices: 4928482--4928598 Score: 155
Period size: 41 Copynumber: 2.8 Consensus size: 41
4928472 CCCAAATTTG
*
4928482 TAAATCCTTAGGGTCATATGTCAGTCTTTCGAGCATGATGTT
1 TAAATCCTTA-GGTCATATGTCAGTCTTTTGAGCATGATGTT
* *
4928524 TAAATCCTTAGGTCATCTATCAGT-TTTTCGAGCATGATGTT
1 TAAATCCTTAGGTCATATGTCAGTCTTTT-GAGCATGATGTT
* * *
4928565 TAAATCCTTAGGTCATTTGTTAATCTTTTGAGCA
1 TAAATCCTTAGGTCATATGTCAGTCTTTTGAGCA
4928599 AGAAGTCCTT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
40 3 0.05
41 49 0.74
42 14 0.21
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (41 bp):
TAAATCCTTAGGTCATATGTCAGTCTTTTGAGCATGATGTT
Found at i:4931326 original size:3 final size:3
Alignment explanation
Indices: 4931320--4931365 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
4931310 AAAAATAGAA
* *
4931320 AAT AAT AAT AAT AAT AAT AAC AAT AAC AAT AAT AAT -AT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4931366 ATTATTTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:4931831 original size:26 final size:25
Alignment explanation
Indices: 4931800--4931863 Score: 101
Period size: 25 Copynumber: 2.5 Consensus size: 25
4931790 TATTATTTCG
*
4931800 GGTCGGGTTGGGTGAAACTTTATTTT
1 GGTCGGGTCGGGTG-AACTTTATTTT
*
4931826 GGTCGGGTCAGGTGAACTTTATTTT
1 GGTCGGGTCGGGTGAACTTTATTTT
4931851 GGTCGGGTCGGGT
1 GGTCGGGTCGGGT
4931864 CAGTTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
25 23 0.66
26 12 0.34
ACGTcount: A:0.12, C:0.11, G:0.39, T:0.38
Consensus pattern (25 bp):
GGTCGGGTCGGGTGAACTTTATTTT
Found at i:4932210 original size:250 final size:251
Alignment explanation
Indices: 4931769--4932638 Score: 1182
Period size: 250 Copynumber: 3.4 Consensus size: 251
4931759 CTTATTCATA
** * * **
4931769 TATTGAATAAAAAT-ATTTTTTTATTATTTCGGGTCGGGTTGGGTGAA-AC-TTTATTTTGGTCG
1 TATTGAATAAAAATAATTTTTTTATTATTTCGGGTCGGGTT-TCT-AATTCATATATTCGGGTCG
* *
4931831 GGTCAGGTG-AACTTTATTTTGGTCGGGTCGGGTCAGTTTTTTTAAGTGTGATATTCGGGTCGGG
64 GGTCGGGTGAAACTTTATTTTGGTCGGGTCGGGTCGGTTTTTTTAAGTGTGATATTCGGGTCGGG
* *
4931895 TCGAATTCGGGTTTAGGGTGAAAAATACCCGACCCGAAAATATATATAATTTTACCTTATATATT
129 TCGAGTTCGGGTTTAGGGTGAAAAAAACCCGACCCGAAAATATATATAATTTTACCTTATATATT
4931960 TAGGAATAATTACAATAATACCCCTCTATATATAATTTTTTCAATTAAGTCACTGTTTT
194 TAGGAATAATTACAATAATACCCCTCTATATAT-ATTTTTTCAATTAAGTCACTGTTTT
* *
4932019 TATTGAAT-AAAATAATTTTTTTATTATTTCGGGTCGAGTTTCTAATTTATATATTCGGGTCGGG
1 TATTGAATAAAAATAATTTTTTTATTATTTCGGGTCGGGTTTCTAATTCATATATTCGGGTCGGG
*
4932083 TCGGGTGAAACTTTATTTTGGTCGGGTCGGGTTGGTTTTTTTAAGTGTGATATTCGGGTC-GGTC
66 TCGGGTGAAACTTTATTTTGGTCGGGTCGGGTCGGTTTTTTTAAGTGTGATATTCGGGTCGGGTC
*
4932147 GAGTTCGGGTTTAGGGTGAAAAAAACCTGACCCGAAAATATATATAATTTTACCTTATATATTTA
131 GAGTTCGGGTTTAGGGTGAAAAAAACCCGACCCGAAAATATATATAATTTTACCTTATATATTTA
* *
4932212 GGAATAATTACAATAATACCTCTCTATATAT-TTTTTCCAATTAAGTCACTGTTTT
196 GGAATAATTACAATAATACCCCTCTATATATATTTTTTCAATTAAGTCACTGTTTT
*
4932267 TATTGAATAAAAATAATTTTTTTATTATTTCGGGTCAGGTCGGATTTCTAATTCATATATTTGGG
1 TATTGAATAAAAATAATTTTTTTATTATTTCGGGTC--G--GG-TTTCTAATTCATATATTCGGG
* * *
4932332 TCGGGTCGAGTGAAAC-TT-TTTTGGTCGGGTCAGGTCGGGTTTTTTTAAGTGTGATATTCTGGT
61 TCGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGGGTC-GGTTTTTTTAAGTGTGATATTCGGGT
* * * * *
4932395 CGGGTCGGGTTTGGATTTAGGGTGAAAAATACCCGACCCGACCCAACCCAAAAAATATATAATTT
125 CGGGTCGAGTTCGGGTTTAGGGTGAAAAA-A----ACCCGA--C--CCGAAAATATATATAATTT
*
4932460 TACCTTATATATTTAGGAATAATTACAATAATACCCCTCTCTATATATATTTTTTTTTAAATTAA
181 TACCTTATATATTTAGGAATAATTACAATAATA-CCC-CTCTATATATA---TTTTTTCAATTAA
4932525 GTCACTGTTTT
241 GTCACTGTTTT
4932536 TATTGAATAAAAATAATTTTTTTATTATTTTAGGTCGGGTCGGGTTTCTAATTCATATATTCGGG
1 TATTGAATAAAAATAATTTTTTTATTA--TT---TCGGGTCGGGTTTCTAATTCATATATTCGGG
*
4932601 TCGGGTCGGGTGAAACTTTATTTTAGTCGGGTCGGGTC
61 TCGGGTCGGGTGAAACTTTATTTTGGTCGGGTCGGGTC
4932639 TCGGATGGAG
Statistics
Matches: 550, Mismatches: 36, Indels: 47
0.87 0.06 0.07
Matches are distributed among these distances:
248 33 0.06
249 33 0.06
250 147 0.27
251 51 0.09
252 16 0.03
253 29 0.05
254 58 0.11
255 1 0.00
259 5 0.01
261 1 0.00
263 50 0.09
264 2 0.00
265 10 0.02
269 84 0.15
270 4 0.01
271 18 0.03
272 1 0.00
274 7 0.01
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (251 bp):
TATTGAATAAAAATAATTTTTTTATTATTTCGGGTCGGGTTTCTAATTCATATATTCGGGTCGGG
TCGGGTGAAACTTTATTTTGGTCGGGTCGGGTCGGTTTTTTTAAGTGTGATATTCGGGTCGGGTC
GAGTTCGGGTTTAGGGTGAAAAAAACCCGACCCGAAAATATATATAATTTTACCTTATATATTTA
GGAATAATTACAATAATACCCCTCTATATATATTTTTTCAATTAAGTCACTGTTTT
Found at i:4933038 original size:18 final size:18
Alignment explanation
Indices: 4933001--4933046 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
4932991 TATGGAATTG
*
4933001 GATTCCAATT-CTTGACA
1 GATTCCAATTCCTTCACA
4933018 GATTCCAATTCCTTCACA
1 GATTCCAATTCCTTCACA
*
4933036 GATTTCAATTC
1 GATTCCAATTC
4933047 TCTCAGAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (18 bp):
GATTCCAATTCCTTCACA
Found at i:4935742 original size:14 final size:14
Alignment explanation
Indices: 4935725--4935775 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
4935715 GATTGAGTTA
*
4935725 AACATAAATGAACG
1 AACATAAACGAACG
4935739 AACAT--A--AACG
1 AACATAAACGAACG
*
4935749 AACATAACCGAACG
1 AACATAAACGAACG
4935763 AACATAAACGAAC
1 AACATAAACGAAC
4935776 ATAACCGAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
10 9 0.29
12 1 0.03
14 21 0.68
ACGTcount: A:0.57, C:0.22, G:0.12, T:0.10
Consensus pattern (14 bp):
AACATAAACGAACG
Found at i:4935750 original size:10 final size:10
Alignment explanation
Indices: 4935735--4935785 Score: 57
Period size: 10 Copynumber: 4.7 Consensus size: 10
4935725 AACATAAATG
4935735 AACGAACATA
1 AACGAACATA
4935745 AACGAACATAA
1 AACGAACAT-A
4935756 CCGAACGAACATA
1 ---AACGAACATA
4935769 AACGAACATA
1 AACGAACATA
*
4935779 ACCGAAC
1 AACGAAC
4935786 GTTCACAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
10 25 0.69
11 1 0.03
13 1 0.03
14 9 0.25
ACGTcount: A:0.55, C:0.25, G:0.12, T:0.08
Consensus pattern (10 bp):
AACGAACATA
Found at i:4935761 original size:24 final size:24
Alignment explanation
Indices: 4935725--4935786 Score: 106
Period size: 24 Copynumber: 2.6 Consensus size: 24
4935715 GATTGAGTTA
**
4935725 AACATAAATGAACGAACATAAACG
1 AACATAACCGAACGAACATAAACG
4935749 AACATAACCGAACGAACATAAACG
1 AACATAACCGAACGAACATAAACG
4935773 AACATAACCGAACG
1 AACATAACCGAACG
4935787 TTCACAAACG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.55, C:0.23, G:0.13, T:0.10
Consensus pattern (24 bp):
AACATAACCGAACGAACATAAACG
Found at i:4935786 original size:14 final size:14
Alignment explanation
Indices: 4935745--4935786 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
4935735 AACGAACATA
4935745 AACGAACATAACCG
1 AACGAACATAACCG
4935759 AACGAACAT-A---
1 AACGAACATAACCG
4935769 AACGAACATAACCG
1 AACGAACATAACCG
4935783 AACG
1 AACG
4935787 TTCACAAACG
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 9 0.38
11 1 0.04
13 1 0.04
14 13 0.54
ACGTcount: A:0.52, C:0.26, G:0.14, T:0.07
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:4935795 original size:24 final size:24
Alignment explanation
Indices: 4935725--4935796 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
4935715 GATTGAGTTA
** *
4935725 AACATAAATGAACGAACATAAACG
1 AACATAACCGAACGAACACAAACG
*
4935749 AACATAACCGAACGAACATAAACG
1 AACATAACCGAACGAACACAAACG
**
4935773 AACATAACCGAACGTTCACAAACG
1 AACATAACCGAACGAACACAAACG
4935797 TAAATGAACG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.53, C:0.24, G:0.12, T:0.11
Consensus pattern (24 bp):
AACATAACCGAACGAACACAAACG
Found at i:4935875 original size:40 final size:40
Alignment explanation
Indices: 4935813--4935919 Score: 178
Period size: 40 Copynumber: 2.6 Consensus size: 40
4935803 AACGAACGAG
*
4935813 ATCTATGTTCGTGTTCGTTCATTTAATTAAACGAACACAAA
1 ATCTA-GTTCATGTTCGTTCATTTAATTAAACGAACACAAA
*
4935854 ATCTAGTTCATGTTTGTTCATTTAATTAAACGAACACAAA
1 ATCTAGTTCATGTTCGTTCATTTAATTAAACGAACACAAA
*
4935894 ATCTTGTTCATGTTCGTTCATTTAAT
1 ATCTAGTTCATGTTCGTTCATTTAAT
4935920 AAATAAACGC
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
40 57 0.92
41 5 0.08
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (40 bp):
ATCTAGTTCATGTTCGTTCATTTAATTAAACGAACACAAA
Found at i:4938873 original size:23 final size:24
Alignment explanation
Indices: 4938783--4938868 Score: 147
Period size: 24 Copynumber: 3.6 Consensus size: 24
4938773 CTTATTAACA
* *
4938783 AATTTGGGTATGGATACATCATAC
1 AATTTGGGTATGGATACTTCACAC
4938807 AATTTGGGTATGGATACTTCACAC
1 AATTTGGGTATGGATACTTCACAC
4938831 AA-TTGGGTATGGATACTTCACAC
1 AATTTGGGTATGGATACTTCACAC
4938854 AATTTGGGTATGGAT
1 AATTTGGGTATGGAT
4938869 GTTCAAGGGT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
23 23 0.39
24 36 0.61
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (24 bp):
AATTTGGGTATGGATACTTCACAC
Found at i:4950449 original size:15 final size:15
Alignment explanation
Indices: 4950426--4950455 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
4950416 ATGAGGATGG
4950426 AATTACAACAACAAC
1 AATTACAACAACAAC
*
4950441 AATTCCAACAACAAC
1 AATTACAACAACAAC
4950456 TATGAGAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.13
Consensus pattern (15 bp):
AATTACAACAACAAC
Found at i:4954059 original size:24 final size:24
Alignment explanation
Indices: 4954032--4954103 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
4954022 ACTTCAAATT
* *
4954032 AAACATAATCAACACTAACAACTA
1 AAACATAATTAACATTAACAACTA
*
4954056 AAACACAATTAACATTAACAACTA
1 AAACATAATTAACATTAACAACTA
*
4954080 ACACATAATTAACATTAACAACTA
1 AAACATAATTAACATTAACAACTA
4954104 TCGATCCTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.21
Consensus pattern (24 bp):
AAACATAATTAACATTAACAACTA
Found at i:4955066 original size:10 final size:9
Alignment explanation
Indices: 4955040--4955069 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
4955030 CATCACACCA
4955040 AATTCTCTC
1 AATTCTCTC
4955049 AATTCTCTC
1 AATTCTCTC
4955058 AACTTCTCTC
1 AA-TTCTCTC
4955068 AA
1 AA
4955070 ATACTCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.40
Consensus pattern (9 bp):
AATTCTCTC
Found at i:4955076 original size:10 final size:10
Alignment explanation
Indices: 4955038--4955076 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
4955028 TTCATCACAC
4955038 CAAATTCTCT
1 CAAATTCTCT
4955048 C-AATTCTCT
1 CAAATTCTCT
*
4955057 CAACTTCTCT
1 CAAATTCTCT
*
4955067 CAAATACTCT
1 CAAATTCTCT
4955077 ATTTCTCTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.28, C:0.33, G:0.00, T:0.38
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:4955131 original size:9 final size:9
Alignment explanation
Indices: 4955119--4955169 Score: 56
Period size: 9 Copynumber: 6.1 Consensus size: 9
4955109 TAATATTTTG
4955119 TATTTAATT
1 TATTTAATT
*
4955128 TATTTAA-A
1 TATTTAATT
4955136 TATTTAATT
1 TATTTAATT
4955145 TATTTAA--
1 TATTTAATT
4955152 TATTT-ATT
1 TATTTAATT
*
4955160 TATATAATT
1 TATTTAATT
4955169 T
1 T
4955170 TTTTTAGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
6 1 0.03
7 5 0.14
8 11 0.31
9 18 0.51
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
TATTTAATT
Found at i:4955141 original size:17 final size:16
Alignment explanation
Indices: 4955119--4955167 Score: 73
Period size: 17 Copynumber: 3.1 Consensus size: 16
4955109 TAATATTTTG
4955119 TATTTAATTTATTTAAA
1 TATTTAATTTATTT-AA
4955136 TATTTAATTTATTTAA
1 TATTTAATTTATTTAA
*
4955152 TATTT-ATTTATATAA
1 TATTTAATTTATTTAA
4955167 T
1 T
4955168 TTTTTTTAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 10 0.32
16 7 0.23
17 14 0.45
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTTAATTTATTTAA
Found at i:4959028 original size:23 final size:22
Alignment explanation
Indices: 4958943--4959028 Score: 72
Period size: 23 Copynumber: 4.0 Consensus size: 22
4958933 CCAGAACCCC
*
4958943 AGGGGGTATCGATTCCCC-T--
1 AGGGGGAATCGATTCCCCTTCA
4958962 AGGGGGAATC-AGTTCCCCTTCAA
1 AGGGGGAATCGA-TTCCCCTTC-A
* * *
4958985 AGTGGGAATTGGTTCCCCTTCA
1 AGGGGGAATCGATTCCCCTTCA
*
4959007 AGGGGGTATCGATTCCCTCTTC
1 AGGGGGAATCGATTCCC-CTTC
4959029 CTTATAATTA
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
18 1 0.02
19 15 0.29
20 1 0.02
22 14 0.27
23 21 0.40
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.28
Consensus pattern (22 bp):
AGGGGGAATCGATTCCCCTTCA
Found at i:4966434 original size:20 final size:20
Alignment explanation
Indices: 4966411--4966450 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
4966401 CTATTTCAAA
*
4966411 AATTTTATGTTTTTAAATTT
1 AATTTAATGTTTTTAAATTT
*
4966431 AATTTAATTTTTTTAAATTT
1 AATTTAATGTTTTTAAATTT
4966451 TAAAATTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (20 bp):
AATTTAATGTTTTTAAATTT
Found at i:4967929 original size:20 final size:20
Alignment explanation
Indices: 4967888--4967929 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
4967878 TATTTTGATT
*
4967888 GCGGATCTAGTGATAAGTAA
1 GCGGATCTAGTGATAAGCAA
*
4967908 GCGGATCTAGTGATGAGCAA
1 GCGGATCTAGTGATAAGCAA
4967928 GC
1 GC
4967930 AACCTGCAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.21
Consensus pattern (20 bp):
GCGGATCTAGTGATAAGCAA
Found at i:4976394 original size:20 final size:20
Alignment explanation
Indices: 4976366--4976403 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4976356 AAACACGTGA
*
4976366 TTTTGATGAAGATTCATGTC
1 TTTTAATGAAGATTCATGTC
4976386 TTTTAATGAAGATTCATG
1 TTTTAATGAAGATTCATG
4976404 CCTTAGGCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (20 bp):
TTTTAATGAAGATTCATGTC
Found at i:4976751 original size:4 final size:4
Alignment explanation
Indices: 4976734--4976774 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 4
4976724 CTCGGAAGCT
* *
4976734 TAGG TAGC TAGG TAGG TAGTG TAGG TAGC TAGG TAGG TAGG
1 TAGG TAGG TAGG TAGG TAG-G TAGG TAGG TAGG TAGG TAGG
4976775 CACCTAGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
4 28 0.88
5 4 0.12
ACGTcount: A:0.24, C:0.05, G:0.44, T:0.27
Consensus pattern (4 bp):
TAGG
Found at i:4976758 original size:21 final size:21
Alignment explanation
Indices: 4976734--4976773 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
4976724 CTCGGAAGCT
4976734 TAGGTAGCTAGGTAGGTAGTG
1 TAGGTAGCTAGGTAGGTAGTG
4976755 TAGGTAGCTAGGTAGGTAG
1 TAGGTAGCTAGGTAGGTAG
4976774 GCACCTAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.05, G:0.42, T:0.28
Consensus pattern (21 bp):
TAGGTAGCTAGGTAGGTAGTG
Found at i:4977151 original size:30 final size:30
Alignment explanation
Indices: 4977112--4977186 Score: 114
Period size: 30 Copynumber: 2.5 Consensus size: 30
4977102 TGAGCTAAGA
* * *
4977112 ATGAACTAGATAAGTGATGATATGCTTGAG
1 ATGAGCTAGATAAATGATGATATGCATGAG
*
4977142 ATGAGCTAGATAAATGATTATATGCATGAG
1 ATGAGCTAGATAAATGATGATATGCATGAG
4977172 ATGAGCTAGATAAAT
1 ATGAGCTAGATAAAT
4977187 TATCTGAAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (30 bp):
ATGAGCTAGATAAATGATGATATGCATGAG
Found at i:4977883 original size:43 final size:43
Alignment explanation
Indices: 4977615--4978157 Score: 328
Period size: 43 Copynumber: 12.6 Consensus size: 43
4977605 GATTACATCA
* * * *
4977615 CCCTAAGTTTTCCAATCTCACTTTATAGC-TTTATAATTGAAGT
1 CCCTAATTTTTTCAATCTCACTTTTTA-CATTTATAATTGAAGC
** * * *
4977658 CATTAAAGTTTTT-AATCTCA-TTTTTA-ATCTTATAATTCAGGC
1 CCCT-AATTTTTTCAATCTCACTTTTTACAT-TTATAATTGAAGC
* * * *
4977700 CTCTAATTTTTTTCAATCCCAAC-TTTTATATTTATAATTGAGGC
1 CCCTAA-TTTTTTCAATCTC-ACTTTTTACATTTATAATTGAAGC
* * * * **
4977744 CACTAATTTTTCCATTATCACTTTCAAGC-TTTATAATTGAAGC
1 CCCTAATTTTTTCAATCTCACTTTTTA-CATTTATAATTGAAGC
* * * *
4977787 CCCTAA-TTTTTCAGTTTCACTTTTTGGC-TTTACT-ATTG-AGG
1 CCCTAATTTTTTCAATCTCACTTTTT-ACATTTA-TAATTGAAGC
* * *
4977828 CCCTAATTTTTTTCAATTTCACTTTCTACTTTTATAATTGAAGC
1 CCCTAA-TTTTTTCAATCTCACTTTTTACATTTATAATTGAAGC
*
4977872 CCCTAATTTTTTTAATCTCACTTTTTACATTTATAATTG-AGTC
1 CCCTAATTTTTTCAATCTCACTTTTTACATTTATAATTGAAG-C
* * * *
4977915 TCCTAA-TTTCTCAAT-TCCACCTTTTATC-TTT-TAATTGAATC
1 CCCTAATTTTTTCAATCT-CACTTTTTA-CATTTATAATTGAAGC
* * * * *
4977956 CCAT-AGTTTTTCTAATCTAACTTTTTTACATTTATAATTGAGGT
1 CCCTAATTTTTTC-AATCTCAC-TTTTTACATTTATAATTGAAGC
** * * * *
4978000 CTTTAGTTTTTTTTCAATCTTACGTTTTACATTTATAATTGAGGC
1 CCCTA--ATTTTTTCAATCTCACTTTTTACATTTATAATTGAAGC
* * * * * *
4978045 CCTTAGTTTATTTTCAATCTCACTTTTTACCTTTAAAATTGAGGT
1 CCCTA-ATT-TTTTCAATCTCACTTTTTACATTTATAATTGAAGC
* * * *
4978090 CCCTGATTTTTTCAATCTCACTTTCTACCTTTATAATTAAAGC
1 CCCTAATTTTTTCAATCTCACTTTTTACATTTATAATTGAAGC
4978133 CCCTAATTATTTT-AATCTCACTTTT
1 CCCTAATT-TTTTCAATCTCACTTTT
4978158 AACCTTTTTT
Statistics
Matches: 394, Mismatches: 74, Indels: 64
0.74 0.14 0.12
Matches are distributed among these distances:
40 1 0.00
41 26 0.07
42 76 0.19
43 163 0.41
44 56 0.14
45 59 0.15
46 7 0.02
47 6 0.02
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.48
Consensus pattern (43 bp):
CCCTAATTTTTTCAATCTCACTTTTTACATTTATAATTGAAGC
Found at i:4977905 original size:128 final size:127
Alignment explanation
Indices: 4977628--4978157 Score: 362
Period size: 128 Copynumber: 4.1 Consensus size: 127
4977618 TAAGTTTTCC
* * ** * *
4977628 AATCTCACTTTATAGC-TTTATAATTGAAGTCATTAAAGTTTTT-AATCTCA-TTTTTA-ATCTT
1 AATCTCACTTTTTA-CATTTATAATTGAAGCCCCT-AA-TTTTTCAATTTCACTTTTTACCT-TT
* * * *
4977689 ATAATTCAGGCCTCTAATTTTTTTCAATCCCAACTTT-TA-TATTTATAATTGAGGCCACTAATT
62 AT-ATTGAGGCC-CTAATTTTTTTCAATCTC-ACTTTCTACT-TTTATAATTGAAGCCCCTAATT
**
4977752 TTTCC
123 TTTTT
* * ** * **
4977757 ATTATCACTTTCAAGC-TTTATAATTGAAGCCCCTAATTTTTCAGTTTCACTTTTTGGCTTTACT
1 AATCTCACTTTTTA-CATTTATAATTGAAGCCCCTAATTTTTCAATTTCACTTTTTACCTTTA-T
*
4977821 ATTGAGGCCCTAATTTTTTTCAATTTCACTTTCTACTTTTATAATTGAAGCCCCTAATTTTTTT
64 ATTGAGGCCCTAATTTTTTTCAATCTCACTTTCTACTTTTATAATTGAAGCCCCTAATTTTTTT
* * * * *
4977885 AATCTCACTTTTTACATTTATAATTG-AGTCTCCTAATTTCTCAATTCCACCTTTTATCTTT-TA
1 AATCTCACTTTTTACATTTATAATTGAAG-CCCCTAATTTTTCAATTTCACTTTTTACCTTTAT-
** * * * * * * * ** *
4977948 ATTGAATCCCATAGTTTTTCT-AATCTAACTTTTTTACATTTATAATTGAGGTCTTTAGTTTTTT
64 ATTGAGGCCC-TAATTTTTTTCAATCTCAC-TTTCTACTTTTATAATTGAAGCCCCTA-ATTTTT
4978012 TT
126 TT
* * * * * *
4978014 CAATCTTACGTTTTACATTTATAATTGAGGCCCTTAGTTTATTTTCAATCTCACTTTTTACCTTT
1 -AATCTCACTTTTTACATTTATAATTGAAGCCCCTA--AT-TTTTCAATTTCACTTTTTACCTTT
* * * * *
4978079 AAAATTGAGGTCCCTGA-TTTTTTCAATCTCACTTTCTACCTTTATAATTAAAGCCCCTAATTAT
62 -ATATTGAGG-CCCTAATTTTTTTCAATCTCACTTTCTACTTTTATAATTGAAGCCCCTAATTTT
4978143 TTT
125 TTT
4978146 AATCTCACTTTT
1 AATCTCACTTTT
4978158 AACCTTTTTT
Statistics
Matches: 309, Mismatches: 71, Indels: 40
0.74 0.17 0.10
Matches are distributed among these distances:
126 1 0.00
127 27 0.09
128 122 0.39
129 51 0.17
130 30 0.10
131 11 0.04
132 7 0.02
133 44 0.14
134 13 0.04
135 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.48
Consensus pattern (127 bp):
AATCTCACTTTTTACATTTATAATTGAAGCCCCTAATTTTTCAATTTCACTTTTTACCTTTATAT
TGAGGCCCTAATTTTTTTCAATCTCACTTTCTACTTTTATAATTGAAGCCCCTAATTTTTTT
Found at i:4977929 original size:85 final size:84
Alignment explanation
Indices: 4977687--4978157 Score: 359
Period size: 85 Copynumber: 5.5 Consensus size: 84
4977677 ATTTTTAATC
* * * * * *
4977687 TTATAATTCAGGCCTCTAATTTTTTTCAATCCCAAC-TTTTATATTTATAATTGAGGCCACTAAT
1 TTATAATTGAAGCCCCTAATTTTTTT-AATCTC-ACTTTTTACATTTATAATTGAGTCC-CTAAT
* *
4977751 TTTTCCATTATCACTTTCAAGC-T
63 TTTTCAATT-TCACTTTCTA-CTT
* * * * *
4977774 TTATAATTGAAGCCCCTAA-TTTTTCAGTTTCACTTTTTGGC-TTTACT-ATTGAGGCCCTAATT
1 TTATAATTGAAGCCCCTAATTTTTTTAATCTCACTTTTT-ACATTTA-TAATTGAGTCCCTAA--
4977836 TTTTTCAATTTCACTTTCTACTT
62 TTTTTCAATTTCACTTTCTACTT
4977859 TTATAATTGAAGCCCCTAATTTTTTTAATCTCACTTTTTACATTTATAATTGAGTCTCCTAATTT
1 TTATAATTGAAGCCCCTAATTTTTTTAATCTCACTTTTTACATTTATAATTGAGTC-CCTAATTT
* *
4977924 CTCAATTCCACCTTT-TA-TCT
65 TTCAATTTCA-CTTTCTACT-T
* * * * * **
4977944 TT-TAATTGAATCCCATAGTTTTTCTAATCTAACTTTTTTACATTTATAATTGAGGTCTTTAGTT
1 TTATAATTGAAGCCCCTAATTTTTTTAATCTCAC-TTTTTACATTTATAATTGA-GTCCCTA---
* *
4978008 TTTTTTCAATCTT-ACGTTT-TACAT
61 ATTTTTCAAT-TTCAC-TTTCTACTT
* * * * * *
4978032 TTATAATTGAGGCCCTTAGTTTATTTTCAATCTCACTTTTTACCTTTAAAATTGAGGTCCCTGAT
1 TTATAATTGAAGCCCCTAATTT-TTTT-AATCTCACTTTTTACATTTATAATTGA-GTCCCT-AA
* *
4978097 TTTTTCAATCTCACTTTCTACCT
62 TTTTTCAATTTCACTTTCTACTT
* *
4978120 TTATAATTAAAGCCCCTAATTATTTTAATCTCACTTTT
1 TTATAATTGAAGCCCCTAATTTTTTTAATCTCACTTTT
4978158 AACCTTTTTT
Statistics
Matches: 313, Mismatches: 45, Indels: 53
0.76 0.11 0.13
Matches are distributed among these distances:
84 34 0.11
85 88 0.28
86 61 0.19
87 30 0.10
88 50 0.16
89 17 0.05
90 25 0.08
91 8 0.03
ACGTcount: A:0.25, C:0.19, G:0.07, T:0.48
Consensus pattern (84 bp):
TTATAATTGAAGCCCCTAATTTTTTTAATCTCACTTTTTACATTTATAATTGAGTCCCTAATTTT
TCAATTTCACTTTCTACTT
Found at i:4978030 original size:45 final size:45
Alignment explanation
Indices: 4977979--4978127 Score: 178
Period size: 45 Copynumber: 3.4 Consensus size: 45
4977969 AATCTAACTT
* * *
4977979 TTTTACATTTATAATTGAGGTCTTTAGTTTTTTTTCAATCTTACG
1 TTTTACATTTATAATTGAGGTCCTTAGTTTATTTTCAATCTCACG
* *
4978024 TTTTACATTTATAATTGAGGCCCTTAGTTTATTTTCAATCTCACT
1 TTTTACATTTATAATTGAGGTCCTTAGTTTATTTTCAATCTCACG
* * * *
4978069 TTTTACCTTTAAAATTGAGGTCCCT-GATT-TTTTCAATCTCAC-
1 TTTTACATTTATAATTGAGGTCCTTAGTTTATTTTCAATCTCACG
*
4978111 TTTCTACCTTTATAATT
1 TTT-TACATTTATAATT
4978128 AAAGCCCCTA
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 3 0.03
43 25 0.27
44 3 0.03
45 61 0.66
ACGTcount: A:0.23, C:0.17, G:0.09, T:0.51
Consensus pattern (45 bp):
TTTTACATTTATAATTGAGGTCCTTAGTTTATTTTCAATCTCACG
Found at i:4981340 original size:43 final size:43
Alignment explanation
Indices: 4981292--4981394 Score: 109
Period size: 46 Copynumber: 2.3 Consensus size: 43
4981282 AACAACAAAG
*
4981292 TTCCAAAAAATATTATTGGAACTCATCATGTAG-AAGTGATGAA
1 TTCCAAAAAATATTATTCGAACTCATCATGTAGTAA-TGATGAA
* * * *
4981335 TTCCAAAAGAAAAATTTATTCGAATTCATCATGTAGTCATGATGAG
1 TTCC-AAA-AAATA-TTATTCGAACTCATCATGTAGTAATGATGAA
4981381 TTCCAAAAATATAT
1 TTCCAAAAA-ATAT
4981395 ATTTTTCATT
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
43 4 0.08
44 6 0.12
45 9 0.18
46 29 0.59
47 1 0.02
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.32
Consensus pattern (43 bp):
TTCCAAAAAATATTATTCGAACTCATCATGTAGTAATGATGAA
Found at i:4981365 original size:46 final size:47
Alignment explanation
Indices: 4981297--4981388 Score: 125
Period size: 46 Copynumber: 2.0 Consensus size: 47
4981287 CAAAGTTCCA
*
4981297 AAAAATATTATTGGAACTCATCATGTAG-AAGTGATGAATTCCAAAAG
1 AAAAATATTATTCGAACTCATCATGTAGTAA-TGATGAATTCCAAAAG
* * *
4981344 AAAAAT-TTATTCGAATTCATCATGTAGTCATGATGAGTTCCAAAA
1 AAAAATATTATTCGAACTCATCATGTAGTAATGATGAATTCCAAAA
4981389 ATATATATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
46 33 0.82
47 7 0.17
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (47 bp):
AAAAATATTATTCGAACTCATCATGTAGTAATGATGAATTCCAAAAG
Found at i:4982850 original size:41 final size:40
Alignment explanation
Indices: 4982594--4982919 Score: 175
Period size: 41 Copynumber: 8.0 Consensus size: 40
4982584 CGTTTGTTGT
* * * * *
4982594 AAAAACGCTGCAATAGAGTTGACATATAGCGGCATTTTTAC
1 AAAAACGCCGCAATAGTGTTAACA-ATAGTGGCGTTTTTAC
* *
4982635 AACAAACGCCGTAATAG-ATTAACATATAGTGGCG-TTTTAGC
1 AA-AAACGCCGCAATAGTGTTAACA-ATAGTGGCGTTTTTA-C
* * * * *
4982676 CAAAACACCGCAATAGATCGGTAA-ATTAGTGGCG-TTATACC
1 AAAAACGCCGCAATAG-T-GTTAACAATAGTGGCGTTTTTA-C
* * *
4982717 ACAAACGCCGCAATAG-ATTACACATATAGTGGCATTTATT-C
1 AAAAACGCCGCAATAGTGTTA-ACA-ATAGTGGCGTTT-TTAC
* * * * *
4982758 TTAAAATGCCGCAATA-TTTATAATAAATAGTGGCG-TTTTAG
1 -AAAAACGCCGCAATAGTGT-TAA-CAATAGTGGCGTTTTTAC
*
4982799 ACAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTTAC
1 AAAAACGCCGCAATAGTGTTAA-CAATAGTGGCGTTTTTAC
* * **
4982840 AAAAACGCCGCAATTGTTTTAATCAATAGTGGCGTTTTTTT
1 AAAAACGCCGCAATAGTGTTAA-CAATAGTGGCGTTTTTAC
* * * *
4982881 AACAAACACCACAATAATG-TAATCAATAGTGGCATTTTT
1 AA-AAACGCCGCAATAGTGTTAA-CAATAGTGGCGTTTTT
4982920 TTGTATAAAT
Statistics
Matches: 221, Mismatches: 46, Indels: 36
0.73 0.15 0.12
Matches are distributed among these distances:
38 2 0.01
39 1 0.00
40 46 0.21
41 117 0.53
42 48 0.22
43 7 0.03
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29
Consensus pattern (40 bp):
AAAAACGCCGCAATAGTGTTAACAATAGTGGCGTTTTTAC
Found at i:4983552 original size:42 final size:42
Alignment explanation
Indices: 4983445--4983854 Score: 487
Period size: 42 Copynumber: 9.8 Consensus size: 42
4983435 TTGTATCTAG
* * *
4983445 AAACGCCGCTATAGA-TC-TGACATTTTGTGGCG-TTTGTATCCAA
1 AAACGCCGCTATAGACTCGT-AC-TTTAGTGGCGTTTTGAAT--AC
* * *
4983488 AAATGCCGCTATAAACTC-TACTTTAGTGGCGTTTTGAATGC
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATAC
* * * * * *
4983529 AAACGCCTCTAAAGACACGTACTTTAGTAGCGTTTT-TATAT
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATAC
* *
4983570 AAACGCCGCTATAGACTAGTACTTTAGTGGCGTTTT-TATAC
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATAC
* *
4983611 AAACGCCGCTATAGACTCTTACTTTAGTGGCGTTTTGAATGC
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATAC
*
4983653 AAACGTCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATAC
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATAC
* * *
4983695 AAACGCTGCTA-ATGACTCGTACTTTAGTGGTGTTTT-TATAC
1 AAACGCCGCTATA-GACTCGTACTTTAGTGGCGTTTTGAATAC
*
4983736 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATGC
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATAC
* *
4983778 AAACGTCGCTATCGACTCGTACTTTAGTGGCGTTTTGAATAC
1 AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATAC
*
4983820 AAACGCTGCTA-ATGACTCGTACTTTAGTGGCGTTT
1 AAACGCCGCTATA-GACTCGTACTTTAGTGGCGTTT
4983855 GTATTTACAA
Statistics
Matches: 317, Mismatches: 42, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
41 121 0.38
42 172 0.54
43 21 0.07
44 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (42 bp):
AAACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATAC
Found at i:4983601 original size:83 final size:83
Alignment explanation
Indices: 4983492--4983854 Score: 480
Period size: 83 Copynumber: 4.4 Consensus size: 83
4983482 ATCCAAAAAT
* * * *
4983492 GCCGCTATAAACTC-TACTTTAGTGGCGTTTTGAATGCAAACGCCTCTAAAGACACGTACTTTAG
1 GCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATACAAACGCCGCTAAAGACTCGTACTTTAG
* *
4983556 TAGCGTTTTTATATAAAC
66 TGGCGTTTTTATACAAAC
* * * *
4983574 GCCGCTATAGACTAGTACTTTAGTGGCGTTTT-TATACAAACGCCGCTATAGACTCTTACTTTAG
1 GCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATACAAACGCCGCTAAAGACTCGTACTTTAG
* *
4983638 TGGCGTTTTGAATGCAAAC
66 TGGCGTTTT-TATACAAAC
* * *
4983657 GTCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATACAAACGCTGCTAATGACTCGTACTTTAG
1 GCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATACAAACGCCGCTAAAGACTCGTACTTTAG
*
4983722 TGGTGTTTTTATACAAAC
66 TGGCGTTTTTATACAAAC
* * **
4983740 GCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATGCAAACGTCGCTATCGACTCGTACTTTAG
1 GCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATACAAACGCCGCTAAAGACTCGTACTTTAG
*
4983805 TGGCGTTTTGAATACAAAC
66 TGGCGTTTT-TATACAAAC
*
4983824 GCTGCTA-ATGACTCGTACTTTAGTGGCGTTT
1 GCCGCTATA-GACTCGTACTTTAGTGGCGTTT
4983855 GTATTTACAA
Statistics
Matches: 245, Mismatches: 31, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
82 46 0.19
83 128 0.52
84 71 0.29
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (83 bp):
GCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATACAAACGCCGCTAAAGACTCGTACTTTAG
TGGCGTTTTTATACAAAC
Found at i:4983753 original size:125 final size:124
Alignment explanation
Indices: 4983492--4983869 Score: 580
Period size: 125 Copynumber: 3.0 Consensus size: 124
4983482 ATCCAAAAAT
* * * * *
4983492 GCCGCTATAAACTCTACTTTAGTGGCGTTTTGAATGCAAACGCCTCTAAAGACACGTACTTTAGT
1 GCCGCTATAGACTCTACTTTAGTGGCGTTTTGAATGCAAACGTCGCTATAGACTCGTACTTTAGT
* * * * *
4983557 AGCGTTTT-TATATAAACGCCGCT-ATAGACTAGTACTTTAGTGGCGTTTTTATACAAAC
66 GGCGTTTTGAATACAAACGCTGCTAAT-GACTCGTACTTTAGTGGCGTTTTTATACAAAC
4983615 GCCGCTATAGACTCTTACTTTAGTGGCGTTTTGAATGCAAACGTCGCTATAGACTCGTACTTTAG
1 GCCGCTATAGACTC-TACTTTAGTGGCGTTTTGAATGCAAACGTCGCTATAGACTCGTACTTTAG
*
4983680 TGGCGTTTTGAATACAAACGCTGCTAATGACTCGTACTTTAGTGGTGTTTTTATACAAAC
65 TGGCGTTTTGAATACAAACGCTGCTAATGACTCGTACTTTAGTGGCGTTTTTATACAAAC
*
4983740 GCCGCTATAGACTCGTACTTTAGTGGCGTTTTGAATGCAAACGTCGCTATCGACTCGTACTTTAG
1 GCCGCTATAGACTC-TACTTTAGTGGCGTTTTGAATGCAAACGTCGCTATAGACTCGTACTTTAG
*
4983805 TGGCGTTTTGAATACAAACGCTGCTAATGACTCGTACTTTAGTGGCGTTTGTATTTACAAAC
65 TGGCGTTTTGAATACAAACGCTGCTAATGACTCGTACTTTAGTGGCGTTT-T-TATACAAAC
4983867 GCC
1 GCC
4983870 ACAATTTTAC
Statistics
Matches: 235, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
123 13 0.06
124 54 0.23
125 154 0.66
126 3 0.01
127 11 0.05
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (124 bp):
GCCGCTATAGACTCTACTTTAGTGGCGTTTTGAATGCAAACGTCGCTATAGACTCGTACTTTAGT
GGCGTTTTGAATACAAACGCTGCTAATGACTCGTACTTTAGTGGCGTTTTTATACAAAC
Found at i:4986321 original size:17 final size:18
Alignment explanation
Indices: 4986307--4986349 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 18
4986297 GAAGAGAGGC
4986307 AGCAGCA-GAGCAGAGAA
1 AGCAGCACGAGCAGAGAA
4986324 AGCAGCACGGAGCAGAGAGA
1 AGCAGCAC-GAGCAGAGA-A
4986344 AGCAGC
1 AGCAGC
4986350 GGCAGCACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.30
19 9 0.39
20 7 0.30
ACGTcount: A:0.42, C:0.21, G:0.37, T:0.00
Consensus pattern (18 bp):
AGCAGCACGAGCAGAGAA
Found at i:4986356 original size:19 final size:19
Alignment explanation
Indices: 4986314--4986367 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 19
4986304 GGCAGCAGCA
4986314 GAGCAGAGA-AAGCAGCACG
1 GAGCAGAGAGAAGCAG-ACG
4986333 GAGCAGAGAGAAGCAG-CG
1 GAGCAGAGAGAAGCAGACG
4986351 GCAGCACAGAGAGAAGC
1 G-AG--CAGAGAGAAGC
4986368 GCATATCAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
18 3 0.10
19 11 0.35
20 6 0.19
21 11 0.35
ACGTcount: A:0.41, C:0.20, G:0.39, T:0.00
Consensus pattern (19 bp):
GAGCAGAGAGAAGCAGACG
Found at i:4987244 original size:43 final size:43
Alignment explanation
Indices: 4987113--4987445 Score: 334
Period size: 43 Copynumber: 7.7 Consensus size: 43
4987103 TTTTTAGCAG
* * * * * *
4987113 AAACACCGCAAAACATCAATACCTACTGCGGCGTTTGTGA-AAA
1 AAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGT-ATGAA
* * * *
4987156 AAATGTCG-TAAGACATCAACACCTACTGCGGCGTTT-TA-GCAAA
1 AAACGCCGCTAA-ATATCAACACCTATTGCGGCGTTTGTATG--AA
* * *
4987199 AAATGCCGCTAAACATCATA-ACCTATTGCGGCGTTTGTCTGAA
1 AAACGCCGCTAAATATCA-ACACCTATTGCGGCGTTTGTATGAA
* * * * *
4987242 AAACGCTGCTAAATATTAACACCTATTGCGACGTTTTTATGAC
1 AAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTATGAA
* *
4987285 AAACGCCGCTAAATATCAACACCTATTGCAGCGTTTGTCTGAA
1 AAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTATGAA
* * *
4987328 AAACGCTGCTAAATATCAACACCTATTGCGGCGTTTTTATGAC
1 AAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTATGAA
* * * * *
4987371 AAACGTCGCTAAATATCAATACCTATTGCGGCATTTTTATGAC
1 AAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTATGAA
4987414 AAACGCCGCTAAATATCAACACCTATTGCGGC
1 AAACGCCGCTAAATATCAACACCTATTGCGGC
4987446 CCAGTTTAAA
Statistics
Matches: 247, Mismatches: 35, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.00
42 4 0.02
43 236 0.96
44 5 0.02
45 1 0.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAATATCAACACCTATTGCGGCGTTTGTATGAA
Found at i:4987263 original size:86 final size:86
Alignment explanation
Indices: 4987170--4987445 Score: 378
Period size: 86 Copynumber: 3.2 Consensus size: 86
4987160 GTCGTAAGAC
* * * *
4987170 ATCAACACCTACTGCGGCG-TTTTA-GCAAAAAATGCCGCTAAACATCATA-ACCTATTGCGGCG
1 ATCAACACCTATTGCGGCGTTTTTATG--ACAAACGCCGCTAAATATCA-ACACCTATTGCGGCG
4987232 TTTGTCTGAAAAACGCTGCTAAAT
63 TTTGTCTGAAAAACGCTGCTAAAT
* * *
4987256 ATTAACACCTATTGCGACGTTTTTATGACAAACGCCGCTAAATATCAACACCTATTGCAGCGTTT
1 ATCAACACCTATTGCGGCGTTTTTATGACAAACGCCGCTAAATATCAACACCTATTGCGGCGTTT
4987321 GTCTGAAAAACGCTGCTAAAT
66 GTCTGAAAAACGCTGCTAAAT
* * *
4987342 ATCAACACCTATTGCGGCGTTTTTATGACAAACGTCGCTAAATATCAATACCTATTGCGGCATTT
1 ATCAACACCTATTGCGGCGTTTTTATGACAAACGCCGCTAAATATCAACACCTATTGCGGCGTTT
* * * *
4987407 TTATGACAAACGCCGCTAAAT
66 GTCTGAAAAACGCTGCTAAAT
4987428 ATCAACACCTATTGCGGC
1 ATCAACACCTATTGCGGC
4987446 CCAGTTTAAA
Statistics
Matches: 170, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
85 1 0.01
86 163 0.96
87 5 0.03
88 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (86 bp):
ATCAACACCTATTGCGGCGTTTTTATGACAAACGCCGCTAAATATCAACACCTATTGCGGCGTTT
GTCTGAAAAACGCTGCTAAAT
Found at i:4987363 original size:129 final size:129
Alignment explanation
Indices: 4987197--4987442 Score: 370
Period size: 129 Copynumber: 1.9 Consensus size: 129
4987187 CGTTTTAGCA
* * *
4987197 AAAAATGCCGCTAAACATCATAACCTATTGCGGCGTTTGTCTGAAAAACG-CTGCTAAATATTAA
1 AAAAACGCCGCTAAACATCATAACCTATTGCGGCGTTTGTATGAAAAACGTC-GCTAAATATCAA
*
4987261 CACCTATTGCGACGTTTTTATGACAAACGCCGCTAAATATCAACACCTATTGCAGCGTTTGTCTG
65 CACCTATTGCGACATTTTTATGACAAACGCCGCTAAATATCAACACCTATTGCAGCGTTTGTCTG
* * * *
4987326 AAAAACGCTGCTAAATATCA-ACACCTATTGCGGCGTTTTTATGACAAACGTCGCTAAATATCAA
1 AAAAACGCCGCTAAACATCATA-ACCTATTGCGGCGTTTGTATGAAAAACGTCGCTAAATATCAA
* *
4987390 TACCTATTGCGGCATTTTTATGACAAACGCCGCTAAATATCAACACCTATTGC
65 CACCTATTGCGACATTTTTATGACAAACGCCGCTAAATATCAACACCTATTGC
4987443 GGCCCAGTTT
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
128 1 0.01
129 103 0.98
130 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (129 bp):
AAAAACGCCGCTAAACATCATAACCTATTGCGGCGTTTGTATGAAAAACGTCGCTAAATATCAAC
ACCTATTGCGACATTTTTATGACAAACGCCGCTAAATATCAACACCTATTGCAGCGTTTGTCTG
Found at i:4987477 original size:19 final size:19
Alignment explanation
Indices: 4987453--4987561 Score: 96
Period size: 20 Copynumber: 5.6 Consensus size: 19
4987443 GGCCCAGTTT
*
4987453 AAATTCGCAACGCGATCTC
1 AAATTCGCAACGCGATTTC
*
4987472 AAATTCGCAACGCGAATTCC
1 AAATTCGCAACGCG-ATTTC
* *
4987492 AATTTCGCAAC-CCAGTTTCC
1 AAATTCGCAACGCGA-TTT-C
* *
4987512 AATTTCGCAACGCGATAGTC
1 AAATTCGCAACGCGAT-TTC
*
4987532 AAATTCGCAACTG-AATTTC
1 AAATTCGCAAC-GCGATTTC
4987551 AAATTCGCAAC
1 AAATTCGCAAC
4987562 AGAATTTAGT
Statistics
Matches: 74, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
18 1 0.01
19 30 0.41
20 39 0.53
21 4 0.05
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (19 bp):
AAATTCGCAACGCGATTTC
Found at i:4987580 original size:18 final size:19
Alignment explanation
Indices: 4987530--4987568 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
4987520 AACGCGATAG
*
4987530 TCAAATTCGCAACTGAATT
1 TCAAATTCGCAACAGAATT
4987549 TCAAATTCGCAACAGAATT
1 TCAAATTCGCAACAGAATT
4987568 T
1 T
4987569 AGTTTCGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (19 bp):
TCAAATTCGCAACAGAATT
Found at i:4988328 original size:12 final size:12
Alignment explanation
Indices: 4988307--4988340 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
4988297 ACCACATTTC
*
4988307 CAATACCAAACA
1 CAATATCAAACA
4988319 CAATATCAAACA
1 CAATATCAAACA
*
4988331 CAATCTCAAA
1 CAATATCAAA
4988341 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:4990806 original size:18 final size:18
Alignment explanation
Indices: 4990783--4990818 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
4990773 AAGCAAAAGG
4990783 AAATCAAAATCACAATCA
1 AAATCAAAATCACAATCA
*
4990801 AAATCAAAATCCCAATCA
1 AAATCAAAATCACAATCA
4990819 CAACCGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.25, G:0.00, T:0.17
Consensus pattern (18 bp):
AAATCAAAATCACAATCA
Found at i:4991133 original size:20 final size:19
Alignment explanation
Indices: 4991104--4991167 Score: 57
Period size: 20 Copynumber: 3.5 Consensus size: 19
4991094 ATGTTTTGAT
*
4991104 CAACGTGAAAGTCAAATTTG
1 CAACGCGAAAGTCAAA-TTG
4991124 CAACGCGAAA-T--AA--G
1 CAACGCGAAAGTCAAATTG
*
4991138 CAACGCGAAAGACAAATTCG
1 CAACGCGAAAGTCAAATT-G
4991158 CAACGCGAAA
1 CAACGCGAAA
4991168 TAAGCGTTGC
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
14 11 0.31
17 4 0.11
19 1 0.03
20 20 0.56
ACGTcount: A:0.45, C:0.22, G:0.20, T:0.12
Consensus pattern (19 bp):
CAACGCGAAAGTCAAATTG
Found at i:4991148 original size:34 final size:34
Alignment explanation
Indices: 4991104--4991202 Score: 135
Period size: 34 Copynumber: 2.9 Consensus size: 34
4991094 ATGTTTTGAT
* *
4991104 CAACGTGAAAGTCAAATTTGCAACGCGAAATAAG
1 CAACGCGAAAGTCAAATTCGCAACGCGAAATAAG
*
4991138 CAACGCGAAAGACAAATTCGCAACGCGAAATAAG
1 CAACGCGAAAGTCAAATTCGCAACGCGAAATAAG
*** *
4991172 CGTTGCGATAGTCAAATTCGCAACGCGAAAT
1 CAACGCGAAAGTCAAATTCGCAACGCGAAAT
4991203 CGCAAACCGA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.16
Consensus pattern (34 bp):
CAACGCGAAAGTCAAATTCGCAACGCGAAATAAG
Found at i:4991336 original size:25 final size:25
Alignment explanation
Indices: 4991302--4991351 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
4991292 AAATCAATTA
4991302 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
4991327 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
4991352 GAAAAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:4991758 original size:18 final size:18
Alignment explanation
Indices: 4991737--4991773 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
4991727 GTAATTGGAG
4991737 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
4991755 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
4991773 T
1 T
4991774 ATAAATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:4991780 original size:24 final size:24
Alignment explanation
Indices: 4991729--4991781 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
4991719 TTTCATATGT
* * *
4991729 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATA
*
4991753 AATTTGAGTTTGAATTTCAATATA
1 AATTTGAGTTTGAATTTAAATATA
4991777 AATTT
1 AATTT
4991782 TGGCTCCACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATA
Found at i:4992331 original size:20 final size:20
Alignment explanation
Indices: 4992306--4992355 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
4992296 ATGTTGCGAT
4992306 CAACGCGAAAGTCAAATTCG
1 CAACGCGAAAGTCAAATTCG
4992326 CAACGCGAAAGTCAAATTCG
1 CAACGCGAAAGTCAAATTCG
4992346 CAACGCGAAA
1 CAACGCGAAA
4992356 TAAGCGTTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.42, C:0.26, G:0.20, T:0.12
Consensus pattern (20 bp):
CAACGCGAAAGTCAAATTCG
Found at i:4992451 original size:20 final size:20
Alignment explanation
Indices: 4992423--4992460 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4992413 GCAACGTTTA
*
4992423 TTTCGCGTTGCGAATTTGAC
1 TTTCACGTTGCGAATTTGAC
4992443 TTTCACGTTGCGAATTTG
1 TTTCACGTTGCGAATTTG
4992461 TACCTTCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.42
Consensus pattern (20 bp):
TTTCACGTTGCGAATTTGAC
Found at i:4994068 original size:21 final size:21
Alignment explanation
Indices: 4994007--4994124 Score: 96
Period size: 21 Copynumber: 5.6 Consensus size: 21
4993997 ATGAATCGGG
* * *
4994007 CTCTTGAACGACGGGCGGGAC
1 CTCTTGAACGATGGGAGGGGC
* *
4994028 CTCTTGAGCGATGACG-GGGGC
1 CTCTTGAACGATG-GGAGGGGC
*
4994049 CTCTTGAACGGTGGGAGGGGC
1 CTCTTGAACGATGGGAGGGGC
* * *
4994070 TTCTTCG-ATGATGAGAGGGGC
1 CTCTT-GAACGATGGGAGGGGC
* *
4994091 CTCTTGAACGATAGGAGGTGC
1 CTCTTGAACGATGGGAGGGGC
*
4994112 CTCTTGAATGATG
1 CTCTTGAACGATG
4994125 ATAGGTGCAT
Statistics
Matches: 75, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
20 2 0.03
21 71 0.95
22 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.38, T:0.23
Consensus pattern (21 bp):
CTCTTGAACGATGGGAGGGGC
Found at i:4994108 original size:42 final size:42
Alignment explanation
Indices: 4994007--4994125 Score: 116
Period size: 42 Copynumber: 2.8 Consensus size: 42
4993997 ATGAATCGGG
** * * **
4994007 CTCTTGAACGACGGGCGGGACCTCTTGAGCGATGACG-GGGGC
1 CTCTTGAACGATAGGAGGGGCCTCTTGAATGATGA-GAGGGGC
* * *
4994049 CTCTTGAACGGTGGGAGGGGCTTCTTCG-ATGATGAGAGGGGC
1 CTCTTGAACGATAGGAGGGGCCTCTT-GAATGATGAGAGGGGC
*
4994091 CTCTTGAACGATAGGAGGTGCCTCTTGAATGATGA
1 CTCTTGAACGATAGGAGGGGCCTCTTGAATGATGA
4994126 TAGGTGCATC
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
41 2 0.03
42 60 0.95
43 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.38, T:0.23
Consensus pattern (42 bp):
CTCTTGAACGATAGGAGGGGCCTCTTGAATGATGAGAGGGGC
Found at i:4994130 original size:21 final size:21
Alignment explanation
Indices: 4994077--4994132 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
4994067 GGCTTCTTCG
*
4994077 ATGATGAGAGGGGCCTCTTGA
1 ATGATGAGAGGTGCCTCTTGA
*
4994098 ACGAT-AGGAGGTGCCTCTTGA
1 ATGATGA-GAGGTGCCTCTTGA
*
4994119 ATGATGATAGGTGC
1 ATGATGAGAGGTGC
4994133 ATCGGGCTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 1 0.03
21 27 0.93
22 1 0.03
ACGTcount: A:0.25, C:0.14, G:0.36, T:0.25
Consensus pattern (21 bp):
ATGATGAGAGGTGCCTCTTGA
Found at i:4996603 original size:22 final size:22
Alignment explanation
Indices: 4996574--4996625 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
4996564 AGATGGAGAT
4996574 AGACGGATTTCGTCGGAAATGG
1 AGACGGATTTCGTCGGAAATGG
* *
4996596 GGACGGATTTCGTCGGAGATGG
1 AGACGGATTTCGTCGGAAATGG
4996618 AGACGGAT
1 AGACGGAT
4996626 GTCGCCGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.25, C:0.13, G:0.40, T:0.21
Consensus pattern (22 bp):
AGACGGATTTCGTCGGAAATGG
Found at i:4996776 original size:20 final size:20
Alignment explanation
Indices: 4996751--4996874 Score: 121
Period size: 20 Copynumber: 6.2 Consensus size: 20
4996741 GCGTAAAAAC
4996751 ATTTGACTTTCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
* *
4996771 ATTTGACTATCACGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
*
4996791 ATTTGACTATCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
*
4996811 ATTTGAC-TTCTGTGTTGCG-
1 ATTTGACTTTC-GCGTTGCGA
* ** *
4996830 ATTT-ACAAATTCGC-ACGTGA
1 ATTTGAC--TTTCGCGTTGCGA
4996850 ATTTGACTTTCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
4996870 ATTTG
1 ATTTG
4996875 GAAAAATCGT
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
18 2 0.02
19 13 0.15
20 64 0.76
21 5 0.06
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.39
Consensus pattern (20 bp):
ATTTGACTTTCGCGTTGCGA
Found at i:4996934 original size:20 final size:20
Alignment explanation
Indices: 4996899--4996952 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
4996889 CGATTTACAT
*
4996899 ATTCGCGTTACGAAATTGGAA
1 ATTCGCGTTGCGAAATTGG-A
*
4996920 ATT-GGGTTGCGAAATTGGA
1 ATTCGCGTTGCGAAATTGGA
4996939 ATTCGCGTTGCGAA
1 ATTCGCGTTGCGAA
4996953 TTTGTTGGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.14
20 22 0.76
21 3 0.10
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (20 bp):
ATTCGCGTTGCGAAATTGGA
Found at i:5001079 original size:117 final size:117
Alignment explanation
Indices: 5000928--5001161 Score: 468
Period size: 117 Copynumber: 2.0 Consensus size: 117
5000918 AATCATAAAA
5000928 AAAGTAAAAGATTAATGATTTAATTCTATTAAAATTTAAAATTCAAATGTCTTAAAAACAATTAA
1 AAAGTAAAAGATTAATGATTTAATTCTATTAAAATTTAAAATTCAAATGTCTTAAAAACAATTAA
5000993 ATAAAAAAATTATTTCAATACTTAATTCCATTAATTTTAAAACTAATAGAAC
66 ATAAAAAAATTATTTCAATACTTAATTCCATTAATTTTAAAACTAATAGAAC
5001045 AAAGTAAAAGATTAATGATTTAATTCTATTAAAATTTAAAATTCAAATGTCTTAAAAACAATTAA
1 AAAGTAAAAGATTAATGATTTAATTCTATTAAAATTTAAAATTCAAATGTCTTAAAAACAATTAA
5001110 ATAAAAAAATTATTTCAATACTTAATTCCATTAATTTTAAAACTAATAGAAC
66 ATAAAAAAATTATTTCAATACTTAATTCCATTAATTTTAAAACTAATAGAAC
5001162 CCAAAAATAA
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 117 1.00
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (117 bp):
AAAGTAAAAGATTAATGATTTAATTCTATTAAAATTTAAAATTCAAATGTCTTAAAAACAATTAA
ATAAAAAAATTATTTCAATACTTAATTCCATTAATTTTAAAACTAATAGAAC
Found at i:5006512 original size:14 final size:14
Alignment explanation
Indices: 5006490--5006519 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
5006480 CTAATTATTT
5006490 TTGTATTATTTAAA
1 TTGTATTATTTAAA
*
5006504 TTGTGTTATTTAAA
1 TTGTATTATTTAAA
5006518 TT
1 TT
5006520 ATTGTGAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (14 bp):
TTGTATTATTTAAA
Found at i:5009376 original size:23 final size:23
Alignment explanation
Indices: 5009344--5009402 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
5009334 ATCTTATATA
*
5009344 GCACTACGGTGCAATTCTACGCG
1 GCACTTCGGTGCAATTCTACGCG
* *
5009367 GCACTTCGGTGTAATTCTACGTG
1 GCACTTCGGTGCAATTCTACGCG
*
5009390 GCACTTCGCTGCA
1 GCACTTCGGTGCA
5009403 TTTATACGAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.27
Consensus pattern (23 bp):
GCACTTCGGTGCAATTCTACGCG
Found at i:5009410 original size:23 final size:23
Alignment explanation
Indices: 5009344--5009410 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 23
5009334 ATCTTATATA
* * *
5009344 GCACTACGGTGCAATTCTACGCG
1 GCACTTCGCTGCAATTATACGCG
* * * *
5009367 GCACTTCGGTGTAATTCTACGTG
1 GCACTTCGCTGCAATTATACGCG
*
5009390 GCACTTCGCTGCATTTATACG
1 GCACTTCGCTGCAATTATACG
5009411 AGTTGTGGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.19, C:0.27, G:0.24, T:0.30
Consensus pattern (23 bp):
GCACTTCGCTGCAATTATACGCG
Found at i:5009632 original size:3 final size:3
Alignment explanation
Indices: 5009624--5009684 Score: 106
Period size: 3 Copynumber: 20.7 Consensus size: 3
5009614 CAATCGCTTG
*
5009624 TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
5009671 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
5009685 TAGCGTCACT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
2 2 0.04
3 53 0.96
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:5016841 original size:18 final size:18
Alignment explanation
Indices: 5016818--5016852 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
5016808 AGGGATTAAC
*
5016818 AGTGGTCCTTCGGGACAT
1 AGTGGTCATTCGGGACAT
5016836 AGTGGTCATTCGGGACA
1 AGTGGTCATTCGGGACA
5016853 AATATTCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.34, T:0.26
Consensus pattern (18 bp):
AGTGGTCATTCGGGACAT
Found at i:5022249 original size:20 final size:20
Alignment explanation
Indices: 5022210--5022283 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 20
5022200 GAATGAAATT
*
5022210 AGTGCATCGATGCA-TAAGG
1 AGTGCATCGATACATTAAGG
*
5022229 AGTGCATCAATACATTAAGG
1 AGTGCATCGATACATTAAGG
*
5022249 AGTGTATCGATACACTGT-A-G
1 AGTGCATCGATACA-T-TAAGG
5022269 AGTGCATCGATACAT
1 AGTGCATCGATACAT
5022284 ACCTTTATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
19 13 0.28
20 31 0.66
21 2 0.04
22 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (20 bp):
AGTGCATCGATACATTAAGG
Found at i:5022951 original size:23 final size:23
Alignment explanation
Indices: 5022885--5022943 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
5022875 ATCTTATATA
*
5022885 GCACTGCGGTGCAATTCTACGCG
1 GCACTTCGGTGCAATTCTACGCG
* * *
5022908 ACACTTTGGTGCAATTCTACGTG
1 GCACTTCGGTGCAATTCTACGCG
5022931 GCACTTCGGTGCA
1 GCACTTCGGTGCA
5022944 TTTATACGAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GCACTTCGGTGCAATTCTACGCG
Found at i:5025693 original size:24 final size:24
Alignment explanation
Indices: 5025666--5025762 Score: 81
Period size: 24 Copynumber: 4.0 Consensus size: 24
5025656 CAAAAAACAA
* * *
5025666 AACATAATTCAGATCATATATCAG
1 AACAGAATTCAGATCAGAAATCAG
* *
5025690 AACAGAATCCAGGTCAGGAAAT-AG
1 AACAGAATTCAGATCA-GAAATCAG
* **
5025714 AACAGATTTCAGATCAGATGTCAG
1 AACAGAATTCAGATCAGAAATCAG
*
5025738 AACAGAATTCAAATC-GTAAATCAG
1 AACAGAATTCAGATCAG-AAATCAG
5025762 A
1 A
5025763 TAAAATATTC
Statistics
Matches: 56, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
23 4 0.07
24 49 0.88
25 3 0.05
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.22
Consensus pattern (24 bp):
AACAGAATTCAGATCAGAAATCAG
Found at i:5027506 original size:27 final size:30
Alignment explanation
Indices: 5027475--5027546 Score: 96
Period size: 27 Copynumber: 2.5 Consensus size: 30
5027465 CAACATAAGG
* *
5027475 GTATTTTCATAATTTTACCTAATTG-A-AA
1 GTATTCTCATAATTTTACCTAAATGAAGAA
*
5027503 -TATTCTCATAATTTTAGCTAAATGAAGAA
1 GTATTCTCATAATTTTACCTAAATGAAGAA
5027532 GTATTCTCATAATTT
1 GTATTCTCATAATTT
5027547 ATCATCCAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 21 0.55
28 1 0.03
29 2 0.05
30 14 0.37
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.44
Consensus pattern (30 bp):
GTATTCTCATAATTTTACCTAAATGAAGAA
Found at i:5039388 original size:41 final size:41
Alignment explanation
Indices: 5039327--5039408 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
5039317 ACCAACGATG
* *
5039327 CTGAACATTGATACATGAATGTACCAAAGATGAACTGATAA
1 CTGAACATTAATACACGAATGTACCAAAGATGAACTGATAA
* *
5039368 CTGAATATTAATACACGAATGTACCAAAGTTGAACTGATAA
1 CTGAACATTAATACACGAATGTACCAAAGATGAACTGATAA
5039409 GTACTCACTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.26
Consensus pattern (41 bp):
CTGAACATTAATACACGAATGTACCAAAGATGAACTGATAA
Found at i:5039562 original size:18 final size:17
Alignment explanation
Indices: 5039503--5039575 Score: 83
Period size: 18 Copynumber: 4.2 Consensus size: 17
5039493 TATTAATCTG
*
5039503 TATCTGATAACTATAAAA
1 TATCTGATAACTGT-AAA
** *
5039521 TATCTGATATTTGTAAT
1 TATCTGATAACTGTAAA
*
5039538 TATCTGATAGCTGTAAA
1 TATCTGATAACTGTAAA
5039555 TCATCTGATAACTGTAAA
1 T-ATCTGATAACTGTAAA
5039573 TAT
1 TAT
5039576 TTAGAATTCA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
17 19 0.41
18 27 0.59
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (17 bp):
TATCTGATAACTGTAAA
Found at i:5039571 original size:35 final size:35
Alignment explanation
Indices: 5039503--5039571 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
5039493 TATTAATCTG
**
5039503 TATCTGATAACTATAAAATATCTGATATTTGTAAT
1 TATCTGATAACTATAAAATATCTGATAACTGTAAT
* *
5039538 TATCTGATAGCTGT-AAATCATCTGATAACTGTAA
1 TATCTGATAACTATAAAAT-ATCTGATAACTGTAA
5039572 ATATTTAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 4 0.14
35 25 0.86
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.39
Consensus pattern (35 bp):
TATCTGATAACTATAAAATATCTGATAACTGTAAT
Found at i:5039781 original size:3 final size:3
Alignment explanation
Indices: 5039773--5039877 Score: 210
Period size: 3 Copynumber: 35.0 Consensus size: 3
5039763 CTTTAACACT
5039773 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
5039821 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
5039869 TTA TTA TTA
1 TTA TTA TTA
5039878 AATCAAAATA
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 102 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:5042320 original size:24 final size:23
Alignment explanation
Indices: 5042287--5042333 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
5042277 TAATTTAATT
5042287 AAATTTAAAAT-TCAATTAATGAA
1 AAATTTAAAATATC-ATTAATGAA
5042310 AAATTCTAAAATATCATTAATGAA
1 AAATT-TAAAATATCATTAATGAA
5042334 CCTTAATAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.23
24 15 0.68
25 2 0.09
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.34
Consensus pattern (23 bp):
AAATTTAAAATATCATTAATGAA
Found at i:5055507 original size:29 final size:28
Alignment explanation
Indices: 5055422--5055513 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 28
5055412 TTTCTTTCAA
* * *
5055422 GTACCTAAAGTATTTTTTTATCAAAATAA
1 GTACCTAAAATA-TTTTTTATTAAAATAG
* *
5055451 GTACTTAAACTTATATTTTTATTCAAAATAG
1 GTACCTAAA-ATAT-TTTTTATT-AAAATAG
*
5055482 GTACCTAAAATATTTTTTGGTTAAAATAG
1 GTACCTAAAATATTTTTT-ATTAAAATAG
5055511 GTA
1 GTA
5055514 AAGTATTCAA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
29 24 0.46
30 14 0.27
31 14 0.27
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (28 bp):
GTACCTAAAATATTTTTTATTAAAATAG
Found at i:5055642 original size:31 final size:32
Alignment explanation
Indices: 5055607--5055691 Score: 106
Period size: 31 Copynumber: 2.8 Consensus size: 32
5055597 AGTTGATTAC
5055607 TTTAGGTACCTATTTTGACCAAAAA-A-AATAT
1 TTTAGGTACCTATTTTGACCAAAAAGATAA-AT
*
5055638 TTTAGGTACCTA-TTTGACCAAAAAGATAACT
1 TTTAGGTACCTATTTTGACCAAAAAGATAAAT
* *
5055669 TTT-GGAACTTATTTTGACCAAAA
1 TTTAGGTACCTATTTTGACCAAAA
5055692 TATACTTTAG
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
30 18 0.38
31 28 0.58
32 2 0.04
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (32 bp):
TTTAGGTACCTATTTTGACCAAAAAGATAAAT
Found at i:5056280 original size:61 final size:61
Alignment explanation
Indices: 5056213--5056333 Score: 190
Period size: 61 Copynumber: 2.0 Consensus size: 61
5056203 TCATTCTACA
* **
5056213 ATGTTCGGTACGTAATACATCATGTTGACGA-TGTTTCCATGTGGGACACCATTAGGAAAAC
1 ATGTTCGGTACGTAATACACCATGTCAAC-ACTGTTTCCATGTGGGACACCATTAGGAAAAC
*
5056274 ATGTTCGGTGCGTAATACACCATGTCAACACTGTTTCCATGTGGGACACCATTAGGAAAA
1 ATGTTCGGTACGTAATACACCATGTCAACACTGTTTCCATGTGGGACACCATTAGGAAAA
5056334 GTGGAAAACA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 1 0.02
61 54 0.98
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (61 bp):
ATGTTCGGTACGTAATACACCATGTCAACACTGTTTCCATGTGGGACACCATTAGGAAAAC
Found at i:5057021 original size:39 final size:40
Alignment explanation
Indices: 5056967--5057048 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 40
5056957 AATAAGTCTC
5056967 TCATAAACATCTGCGCCAACACAATTT-AGTTAAAAAATT
1 TCATAAACATCTGCGCCAACACAATTTAAGTTAAAAAATT
*
5057006 TCATAAACATCTGCGCCAACACAATTTAAGTTAAAAATTT
1 TCATAAACATCTGCGCCAACACAATTTAAGTTAAAAAATT
5057046 TCA
1 TCA
5057049 CTGATCTTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 27 0.66
40 14 0.34
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (40 bp):
TCATAAACATCTGCGCCAACACAATTTAAGTTAAAAAATT
Found at i:5057230 original size:26 final size:25
Alignment explanation
Indices: 5057190--5057244 Score: 92
Period size: 26 Copynumber: 2.2 Consensus size: 25
5057180 AATTGATTGA
*
5057190 TTTTCATTCTTAAATATAAAATAAT
1 TTTTCACTCTTAAATATAAAATAAT
5057215 TTTTCACTCATTAAATATAAAATAAT
1 TTTTCACTC-TTAAATATAAAATAAT
5057241 TTTT
1 TTTT
5057245 GGAGACAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 8 0.29
26 20 0.71
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (25 bp):
TTTTCACTCTTAAATATAAAATAAT
Found at i:5058933 original size:113 final size:113
Alignment explanation
Indices: 5058735--5058961 Score: 454
Period size: 113 Copynumber: 2.0 Consensus size: 113
5058725 ATTAATCAAA
5058735 TAAAATTAAAATTTTAACAATCTCCTTATCCTAACTCTCATCCATATAAATTCTCATTCATGGAA
1 TAAAATTAAAATTTTAACAATCTCCTTATCCTAACTCTCATCCATATAAATTCTCATTCATGGAA
5058800 GGGGAATGCACTCCCAAAATAAATAAATAAAAAACCATTCTATAAACC
66 GGGGAATGCACTCCCAAAATAAATAAATAAAAAACCATTCTATAAACC
5058848 TAAAATTAAAATTTTAACAATCTCCTTATCCTAACTCTCATCCATATAAATTCTCATTCATGGAA
1 TAAAATTAAAATTTTAACAATCTCCTTATCCTAACTCTCATCCATATAAATTCTCATTCATGGAA
5058913 GGGGAATGCACTCCCAAAATAAATAAATAAAAAACCATTCTATAAACC
66 GGGGAATGCACTCCCAAAATAAATAAATAAAAAACCATTCTATAAACC
5058961 T
1 T
5058962 TTACTTTGGT
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 114 1.00
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (113 bp):
TAAAATTAAAATTTTAACAATCTCCTTATCCTAACTCTCATCCATATAAATTCTCATTCATGGAA
GGGGAATGCACTCCCAAAATAAATAAATAAAAAACCATTCTATAAACC
Found at i:5059571 original size:15 final size:16
Alignment explanation
Indices: 5059551--5059580 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
5059541 CCTTCCAAGT
5059551 TAGTTATAAA-AAATG
1 TAGTTATAAATAAATG
5059566 TAGTTATAAATAAAT
1 TAGTTATAAATAAAT
5059581 ATTATAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.37
Consensus pattern (16 bp):
TAGTTATAAATAAATG
Done.