Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001279.1 Hibiscus syriacus cultivar Beakdansim tig00002511_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6984689
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 29
Found at i:1444693 original size:23 final size:23
Alignment explanation
Indices: 1444667--1444727 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 23
1444657 TATGGCACTT
1444667 CGGTGCATTTCTACGTGGAACTA
1 CGGTGCATTTCTACGTGGAACTA
* * * * *
1444690 CGGTGTAATTCTACTTGGCACTT
1 CGGTGCATTTCTACGTGGAACTA
* *
1444713 CAGTGCATTTATACG
1 CGGTGCATTTCTACG
1444728 AGGAGTGGTG
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.34
Consensus pattern (23 bp):
CGGTGCATTTCTACGTGGAACTA
Found at i:1444778 original size:16 final size:17
Alignment explanation
Indices: 1444757--1444790 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
1444747 GTGCAAAACC
1444757 TCTATAG-ACTCACATA
1 TCTATAGTACTCACATA
*
1444773 TCTATAGTTCTCACATA
1 TCTATAGTACTCACATA
1444790 T
1 T
1444791 GTACATGGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (17 bp):
TCTATAGTACTCACATA
Found at i:1446961 original size:47 final size:47
Alignment explanation
Indices: 1446789--1447147 Score: 515
Period size: 47 Copynumber: 7.6 Consensus size: 47
1446779 CGTATTAACA
* *
1446789 CATCTATTT-ATGCATTTT-AATATACATGGAATCCTTTCATGCCTTAATG
1 CATC-ATTTCATGCATTTTCAAT-T--ATGGCATCCGTTCATGCCTTAATG
* *
1446838 CATCCTTTTCTTGCATTTTCAATTATGGCATCCGTTCATGCCTTAATG
1 CAT-CATTTCATGCATTTTCAATTATGGCATCCGTTCATGCCTTAATG
*
1446886 CATCATTTTCATGCATTTTCAATTATGGCATCCGCTCATGCCTTAATG
1 CATCA-TTTCATGCATTTTCAATTATGGCATCCGTTCATGCCTTAATG
* *
1446934 CATCATTTCATGCATTTTCAACTATGGCATCCGTTCATGCCTTAAAG
1 CATCATTTCATGCATTTTCAATTATGGCATCCGTTCATGCCTTAATG
*
1446981 CATCATTTCATGCATTTTCAATTATGGCATCCGTTCATGCCTTAATC
1 CATCATTTCATGCATTTTCAATTATGGCATCCGTTCATGCCTTAATG
* * *
1447028 CATCCTTTCATGCATTTTTAATTATGGCATCCGTTCTTGCCTTAATG
1 CATCATTTCATGCATTTTCAATTATGGCATCCGTTCATGCCTTAATG
* * *
1447075 CACCCTTTCATGCATTTTCAAATATGGCATCCGTTCATGCCTTAATG
1 CATCATTTCATGCATTTTCAATTATGGCATCCGTTCATGCCTTAATG
*
1447122 CATCCTTTCATGCATTTTCAATTATG
1 CATCATTTCATGCATTTTCAATTATG
1447148 AATTTGATTT
Statistics
Matches: 283, Mismatches: 23, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 194 0.69
48 70 0.25
49 6 0.02
50 10 0.04
51 3 0.01
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (47 bp):
CATCATTTCATGCATTTTCAATTATGGCATCCGTTCATGCCTTAATG
Found at i:1446971 original size:27 final size:25
Alignment explanation
Indices: 1446893--1447114 Score: 88
Period size: 27 Copynumber: 9.3 Consensus size: 25
1446883 ATGCATCATT
1446893 TTCATGCATTTTCAATTATGGCATCCG
1 TTCATGCATTTT-AA-TATGGCATCCG
* * **
1446920 CTCATGC--CTT-A-AT-GCATCAT
1 TTCATGCATTTTAATATGGCATCCG
1446940 TTCATGCATTTTCAACTATGGCATCCG
1 TTCATGCATTTT-AA-TATGGCATCCG
* **
1446967 TTCATGC--CTTAA-A--GCATCAT
1 TTCATGCATTTTAATATGGCATCCG
1446987 TTCATGCATTTTCAATTATGGCATCCG
1 TTCATGCATTTT-AA-TATGGCATCCG
* * *
1447014 TTCATGC--CTT-A-AT-CCATCCT
1 TTCATGCATTTTAATATGGCATCCG
1447034 TTCATGCATTTTTAATTATGGCATCCG
1 TTCATGCA-TTTTAA-TATGGCATCCG
* * * *
1447061 TTCTTGC--CTT-A-AT-GCACCCT
1 TTCATGCATTTTAATATGGCATCCG
1447081 TTCATGCATTTTCAAATATGGCATCCG
1 TTCATGCATTTT--AATATGGCATCCG
1447108 TTCATGC
1 TTCATGC
1447115 CTTAATGCAT
Statistics
Matches: 139, Mismatches: 28, Indels: 56
0.62 0.13 0.25
Matches are distributed among these distances:
20 46 0.33
21 6 0.04
22 7 0.05
23 7 0.05
24 6 0.04
25 8 0.06
26 6 0.04
27 53 0.38
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.39
Consensus pattern (25 bp):
TTCATGCATTTTAATATGGCATCCG
Found at i:1447698 original size:95 final size:96
Alignment explanation
Indices: 1447556--1447752 Score: 263
Period size: 95 Copynumber: 2.1 Consensus size: 96
1447546 ATCCTAGTAC
* * * ** * * *
1447556 CGATACTTCTATACTATGGTGCTGATACCCCCTTCCGGTATCGATACCAAAATTAGCTTTGATGT
1 CGATACTACTAAACTATGGTACTGATACCCCCTTAAGGTATCAATACCAAAATTAGATTCGATGT
*
1447621 CT-CATGGTATCGATACCCTTACCACGGTAT
66 CTGCATGGTATCGATACCCTTACAACGGTAT
1447651 CGATACTACTAAACTATGGTAAC-GATACCCCCTTAAGGTATCAATACCAAAATTAGATTCGATG
1 CGATACTACTAAACTATGGT-ACTGATACCCCCTTAAGGTATCAATACCAAAATTAGATTCGATG
* * *
1447715 TTTGCATGGTATTGATACCCTTACAATGGTAT
65 TCTGCATGGTATCGATACCCTTACAACGGTAT
1447747 CGATAC
1 CGATAC
1447753 GGCATCAACA
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
95 56 0.64
96 32 0.36
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (96 bp):
CGATACTACTAAACTATGGTACTGATACCCCCTTAAGGTATCAATACCAAAATTAGATTCGATGT
CTGCATGGTATCGATACCCTTACAACGGTAT
Found at i:1460545 original size:82 final size:82
Alignment explanation
Indices: 1460095--1460533 Score: 655
Period size: 82 Copynumber: 5.4 Consensus size: 82
1460085 AATAATGGTT
* * *
1460095 GTGCATTATCATCTTCTGCAATTTTTCAGAGGTCATTTAATGCATAATTTAAACAACTTTTTAGA
1 GTGCATTATCATCTTCTGCAACTTTTCAGAGGTCATTCAATGCATAATTTAAACAACTTTTCAGA
*
1460160 CAATTGGTGAAATAGTG
66 CAATGGGTGAAATAGTG
* * * *
1460177 GTGAATTATCATCTTCTACAACTTTTCAGAGGTCATTCAATGTATAATTTAAATAACTTTTCAGA
1 GTGCATTATCATCTTCTGCAACTTTTCAGAGGTCATTCAATGCATAATTTAAACAACTTTTCAGA
* *
1460242 CAACT-GATGAAATAGCG
66 CAA-TGGGTGAAATAGTG
* *
1460259 ATGCATTATCATCTTCTGCAACTTTTCAGAGGTCATTCAATGCATAATTTAAACAACTTTTCAGG
1 GTGCATTATCATCTTCTGCAACTTTTCAGAGGTCATTCAATGCATAATTTAAACAACTTTTCAGA
*
1460324 CAATGGGTGAAATATTG
66 CAATGGGTGAAATAGTG
* * * * *
1460341 GTGCATTATCATCTTCTGCAAATTTTCAAAGGTTATTCAATGCATAATTTAAACAACTTCTCACA
1 GTGCATTATCATCTTCTGCAACTTTTCAGAGGTCATTCAATGCATAATTTAAACAACTTTTCAGA
1460406 CAATGGGTGAAATAGTG
66 CAATGGGTGAAATAGTG
** * *
1460423 GTGCATTATCATCTTCTATAACTTTTTAGAGGTCATTCAATGCATAATTTAAACAACTTATCAGA
1 GTGCATTATCATCTTCTGCAACTTTTCAGAGGTCATTCAATGCATAATTTAAACAACTTTTCAGA
*
1460488 AAATGGGTGAAATAGTG
66 CAATGGGTGAAATAGTG
1460505 GTGCATTATCATCTTCTGCAACTTTTCAG
1 GTGCATTATCATCTTCTGCAACTTTTCAG
1460534 TGATGTATCA
Statistics
Matches: 317, Mismatches: 38, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
81 1 0.00
82 315 0.99
83 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (82 bp):
GTGCATTATCATCTTCTGCAACTTTTCAGAGGTCATTCAATGCATAATTTAAACAACTTTTCAGA
CAATGGGTGAAATAGTG
Found at i:1460591 original size:68 final size:68
Alignment explanation
Indices: 1460482--1460626 Score: 272
Period size: 68 Copynumber: 2.1 Consensus size: 68
1460472 TAAACAACTT
* *
1460482 ATCAGAAAATGGGTGAAATAGTGGTGCATTATCATCTTCTGCAACTTTTCAGTGATGTATCAATT
1 ATCAGAAAATAGGTGAAATAGTGGTGCATTATCATCTTCTGCAACTTTTCAGTGATGTATCAACT
1460547 GAA
66 GAA
1460550 ATCAGAAAATAGGTGAAATAGTGGTGCATTATCATCTTCTGCAACTTTTCAGTGATGTATCAACT
1 ATCAGAAAATAGGTGAAATAGTGGTGCATTATCATCTTCTGCAACTTTTCAGTGATGTATCAACT
1460615 GAA
66 GAA
1460618 ATCAGAAAA
1 ATCAGAAAA
1460627 AAATGTGTGC
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 75 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (68 bp):
ATCAGAAAATAGGTGAAATAGTGGTGCATTATCATCTTCTGCAACTTTTCAGTGATGTATCAACT
GAA
Found at i:1462035 original size:3 final size:3
Alignment explanation
Indices: 1461982--1462016 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
1461972 GATACTAAGA
1461982 AAT AAT AAT AAT AAT AAT AAT AAT AAT GAAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT A
1462017 TGTGTCAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:1462735 original size:28 final size:28
Alignment explanation
Indices: 1462702--1462759 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
1462692 AAAAGTCAAT
1462702 TTGTTTCATTAATACACCACCTTTTAGG
1 TTGTTTCATTAATACACCACCTTTTAGG
* *
1462730 TTGTTTCATTAATAGACCACCTTTTTGG
1 TTGTTTCATTAATACACCACCTTTTAGG
1462758 TT
1 TT
1462760 ATCACCTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (28 bp):
TTGTTTCATTAATACACCACCTTTTAGG
Found at i:1464079 original size:24 final size:25
Alignment explanation
Indices: 1464037--1464083 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
1464027 AACTCAAAAA
*
1464037 AAAATTAGAAGCTCGATTGAAGCCT
1 AAAATTAGAAGCTCAATTGAAGCCT
*
1464062 AAAATTTG-AGCTCAATTGAAGC
1 AAAATTAGAAGCTCAATTGAAGC
1464084 GAAAGAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (25 bp):
AAAATTAGAAGCTCAATTGAAGCCT
Found at i:1466218 original size:22 final size:20
Alignment explanation
Indices: 1466193--1466239 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
1466183 TACTCGGGAA
*
1466193 AGTATCGATATCACAAGAGGGG
1 AGTATCGATATC-CAA-AGAGG
*
1466215 AGTATTGATATCCAAAGAGG
1 AGTATCGATATCCAAAGAGG
1466235 AGTAT
1 AGTAT
1466240 TGGTACCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 9 0.39
21 3 0.13
22 11 0.48
ACGTcount: A:0.38, C:0.11, G:0.28, T:0.23
Consensus pattern (20 bp):
AGTATCGATATCCAAAGAGG
Found at i:1466238 original size:20 final size:22
Alignment explanation
Indices: 1466193--1466241 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
1466183 TACTCGGGAA
* *
1466193 AGTATCGATATCACAAGAGGGG
1 AGTATTGATATCACAAGAGAGG
1466215 AGTATTGATATC-CAA-AGAGG
1 AGTATTGATATCACAAGAGAGG
1466235 AGTATTG
1 AGTATTG
1466242 GTACCATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 11 0.44
21 3 0.12
22 11 0.44
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.24
Consensus pattern (22 bp):
AGTATTGATATCACAAGAGAGG
Found at i:1480069 original size:8 final size:8
Alignment explanation
Indices: 1480056--1480082 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
1480046 TTTGAATTCC
1480056 CATATTTG
1 CATATTTG
1480064 CATATTTG
1 CATATTTG
1480072 CATATTTG
1 CATATTTG
1480080 CAT
1 CAT
1480083 TTGCATGAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (8 bp):
CATATTTG
Found at i:1480099 original size:28 final size:28
Alignment explanation
Indices: 1480063--1480116 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
1480053 TCCCATATTT
1480063 GCATATTTGCATATTTGCATTT-GCATGA
1 GCATATTTGCATATTTGC-TTTAGCATGA
* *
1480091 GCATCTTTGCATCTTTGCTTTAGCAT
1 GCATATTTGCATATTTGCTTTAGCAT
1480117 CTATACATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 3 0.13
28 20 0.87
ACGTcount: A:0.20, C:0.19, G:0.17, T:0.44
Consensus pattern (28 bp):
GCATATTTGCATATTTGCTTTAGCATGA
Found at i:1481467 original size:10 final size:10
Alignment explanation
Indices: 1481450--1481520 Score: 65
Period size: 10 Copynumber: 7.3 Consensus size: 10
1481440 AAAAAGGGGG
*
1481450 AAAGAAAAAT
1 AAAGAAAAAA
*
1481460 ATAGAAAAAA
1 AAAGAAAAAA
1481470 AAAG-AAAAA
1 AAAGAAAAAA
*
1481479 AAAGAAGAAA
1 AAAGAAAAAA
* * *
1481489 AAAGATAGAG
1 AAAGAAAAAA
*
1481499 AAAG-GAAAA
1 AAAGAAAAAA
1481508 AAAGAAAAAA
1 AAAGAAAAAA
1481518 AAA
1 AAA
1481521 TGATCAAAAC
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
9 15 0.32
10 32 0.68
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.04
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:1481482 original size:29 final size:28
Alignment explanation
Indices: 1481450--1481519 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
1481440 AAAAAGGGGG
*
1481450 AAAGAAAAATATAGAAAAAAAAAGAAAAA
1 AAAGAAAAA-AAAGAAAAAAAAAGAAAAA
* * * *
1481479 AAAGAAGAAAAAAGATAGAGAAAGGAAAA
1 AAAGAA-AAAAAAGAAAAAAAAAGAAAAA
1481508 AAAGAAAAAAAA
1 AAAGAAAAAAAA
1481520 ATGATCAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 6 0.17
29 26 0.74
30 3 0.09
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (28 bp):
AAAGAAAAAAAAGAAAAAAAAAGAAAAA
Found at i:1483688 original size:22 final size:22
Alignment explanation
Indices: 1483624--1483688 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 22
1483614 TTTTCATCAA
1483624 TATATTATTT-AT-TTATT-TAT
1 TATATT-TTTAATATTATTATAT
* * **
1483644 TCATATTTATAATAATACAATAT
1 T-ATATTTTTAATATTATTATAT
1483667 TATATTTTTAATATTATTATAT
1 TATATTTTTAATATTATTATAT
1483689 AAAATAATCA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.09
21 7 0.21
22 19 0.58
23 4 0.12
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (22 bp):
TATATTTTTAATATTATTATAT
Found at i:1483771 original size:30 final size:31
Alignment explanation
Indices: 1483735--1483813 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 31
1483725 ATATTTTTAG
1483735 TTTAATAATATATAATAAAAAATTTATATA-
1 TTTAATAATATATAATAAAAAATTTATATAT
**
1483765 TTTAATAATGA-ATAAT--ATTATTTATATAT
1 TTTAATAAT-ATATAATAAAAAATTTATATAT
*
1483794 TTTAATAATATTTTAATAAA
1 TTTAATAATA-TATAATAAA
1483814 GATTTTTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
28 11 0.28
29 9 0.22
30 18 0.45
31 1 0.03
32 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (31 bp):
TTTAATAATATATAATAAAAAATTTATATAT
Found at i:1483783 original size:59 final size:58
Alignment explanation
Indices: 1483646--1483813 Score: 150
Period size: 57 Copynumber: 2.9 Consensus size: 58
1483636 TTATTTATTC
* * **
1483646 ATATTT-ATAATAATACAATATTATATTTTTAATATT-ATTATATAAAATAATCAATTAT
1 ATATTTAATAATAATA-AATATTATATTTTTAAT-TTAATAATATATAATAAAAAATTAT
* *
1483704 AT-TATAATAAT-ATAAGATATTATATTTTTAGTTTAATAATATATAATAAAAAATTTAT
1 ATATTTAATAATAATAA-ATATTATATTTTTAATTTAATAATATATAATAAAAAA-TTAT
* * *
1483762 ATATTTAATAATGAAT-AATATTAT-TTATATATTTTAATAATATTTTAATAAA
1 ATATTTAATAAT-AATAAATATTATATT-TTTAATTTAATAATA-TATAATAAA
1483814 GATTTTTAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 16
0.78 0.09 0.14
Matches are distributed among these distances:
56 3 0.03
57 34 0.37
58 15 0.16
59 28 0.31
60 9 0.10
61 2 0.02
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (58 bp):
ATATTTAATAATAATAAATATTATATTTTTAATTTAATAATATATAATAAAAAATTAT
Found at i:1483804 original size:11 final size:11
Alignment explanation
Indices: 1483775--1483812 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
1483765 TTTAATAATG
1483775 AATAATATTATT
1 AATAATATT-TT
*
1483787 TAT-ATATTTT
1 AATAATATTTT
1483797 AATAATATTTT
1 AATAATATTTT
1483808 AATAA
1 AATAA
1483813 AGATTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 4 0.17
11 17 0.74
12 2 0.09
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
AATAATATTTT
Found at i:1483826 original size:23 final size:23
Alignment explanation
Indices: 1483793--1483851 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
1483783 TATTTATATA
**
1483793 TTTTAATAATATTTTAATAAAGAT
1 TTTTAA-AATATACTAATAAAGAT
* *
1483817 TTTTAAAATATACTAATTAATAT
1 TTTTAAAATATACTAATAAAGAT
1483840 TTTTAAAATATA
1 TTTTAAAATATA
1483852 ATATAACACT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 25 0.81
24 6 0.19
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
TTTTAAAATATACTAATAAAGAT
Found at i:1483965 original size:13 final size:14
Alignment explanation
Indices: 1483937--1483969 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
1483927 TATTTTTATT
1483937 AATAAAATTATAAA
1 AATAAAATTATAAA
*
1483951 AATAATATT-TAAA
1 AATAAAATTATAAA
1483964 AATAAA
1 AATAAA
1483970 TAAATAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAAATTATAAA
Found at i:1483997 original size:22 final size:22
Alignment explanation
Indices: 1483967--1484025 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
1483957 ATTTAAAAAT
*
1483967 AAATAAATAATTTTAATATTTTA
1 AAATAAATAATATTAA-ATTTTA
1483990 AAAT-AATAATATTAAATTTTA
1 AAATAAATAATATTAAATTTTA
**
1484011 TGATAAATAATATTA
1 AAATAAATAATATTA
1484026 TTTATTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.25
22 20 0.62
23 4 0.12
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
AAATAAATAATATTAAATTTTA
Found at i:1484256 original size:36 final size:35
Alignment explanation
Indices: 1484205--1484273 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 35
1484195 GTAATTCATT
1484205 TTCCATAATTCAAATTCCAGTAATTCATTTTCCAG
1 TTCCATAATTCAAATTCCAGTAATTCATTTTCCAG
*
1484240 TTCCAGTAATTGAAATTCCAGTAATTCATTTTCC
1 TTCCA-TAATTCAAATTCCAGTAATTCATTTTCC
1484274 GGAAAACCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 5 0.16
36 27 0.84
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (35 bp):
TTCCATAATTCAAATTCCAGTAATTCATTTTCCAG
Found at i:1484258 original size:21 final size:21
Alignment explanation
Indices: 1484219--1484261 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1484209 ATAATTCAAA
**
1484219 TTCCAGTAATTCATTTTCCAG
1 TTCCAGTAATTCAAATTCCAG
*
1484240 TTCCAGTAATTGAAATTCCAG
1 TTCCAGTAATTCAAATTCCAG
1484261 T
1 T
1484262 AATTCATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.40
Consensus pattern (21 bp):
TTCCAGTAATTCAAATTCCAG
Found at i:1484273 original size:15 final size:15
Alignment explanation
Indices: 1484195--1484240 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
1484185 TTCCAGAAAT
1484195 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
**
1484210 -TAATTCAAATTCCA
1 GTAATTCATTTTCCA
1484224 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
1484239 GT
1 GT
1484241 TCCAGTAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (15 bp):
GTAATTCATTTTCCA
Found at i:1485347 original size:139 final size:139
Alignment explanation
Indices: 1485047--1485721 Score: 884
Period size: 139 Copynumber: 4.9 Consensus size: 139
1485037 GTAAACCAAC
* * *
1485047 CAACATTTCCAATGGATAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG-AGTTCATA
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGA-TGAAGGAGAAGAAGTTCATA
* * * ***
1485111 ATGAGAAGACCTTGTTCGACCTATCA-CTCGATTCA-CGACAT-T----TCGAATCAATGACACC
65 ATGAGAAGAACTTGTTCAACCT-T-AGCTCGATTCATC-ACATATGGAGTTGAATCAGCAACACC
1485169 TCACTCGAGGGAT
127 TCACTCGAGGGAT
* * *
1485182 CAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCTGATGAAGGAGAAGAAGTTTATAA
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCATAA
* * *
1485247 TGAGAATAACTTGTTCAATCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAATACCTCAC
66 TGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCAC
* *
1485312 TTGAGGAAT
131 TCGAGGGAT
* *
1485321 CAATATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCATAT
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCATAA
* **
1485386 TGAGAAAAAACTTGTTCAACCTTAGCTCGATTTGTCACATATGGAGTTGAATCAGCAACACCTCA
66 TGAG-AAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
*
1485451 CTCAAGGGAT
130 CTCGAGGGAT
* *
1485461 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTTATCCAATGAAGGAGAAGAAGTTCATAA
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCATAA
* *
1485526 TGAGAAGAACTTGTTCAACCTTAGCTCGATTCATGACATATGGAGTTGAATCATCAACACCTCAC
66 TGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCAC
**
1485591 TCGAATGAT
131 TCGAGGGAT
* * * * *
1485600 CAACCTATCCAGTGGAGAGTTCATAATGAGAACAACTCATCCGATAAAGGAGAAGAAGTTCATAA
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCATAA
* *
1485665 TGAGAAGAACTTGTTCAACCTTAGCAT-GTTTCCATCACATAAGGAGTTGGAA-CAGCA
66 TGAGAAGAACTTGTTCAACCTTAGC-TCGATT-CATCACATATGGAGTT-GAATCAGCA
1485722 TCGACTTTTG
Statistics
Matches: 475, Mismatches: 53, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
133 1 0.00
134 23 0.05
135 68 0.14
139 234 0.49
140 146 0.31
141 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (139 bp):
CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCATAA
TGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCAC
TCGAGGGAT
Found at i:1485541 original size:20 final size:20
Alignment explanation
Indices: 1485479--1485542 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 20
1485469 CCAATGGAGA
1485479 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
* * *
1485499 ATCCAATGAAGGAGAAGAA---
1 GTTC-AT-AATGAGAAGAACTT
1485518 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
1485538 GTTCA
1 GTTCA
1485543 ACCTTAGCTC
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
17 10 0.30
18 2 0.06
19 2 0.06
20 7 0.21
21 2 0.06
22 10 0.30
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACTT
Found at i:1485551 original size:279 final size:273
Alignment explanation
Indices: 1485047--1485689 Score: 873
Period size: 279 Copynumber: 2.3 Consensus size: 273
1485037 GTAAACCAAC
* * *
1485047 CAACATTTCCAATGGATAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAG-AGTTCATA
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGA-TGAAGGAGAAGAAGTTCATA
* * **
1485111 ATGAGAAGACCTTGTTCGACCTATCA-CTCGATTCACGACATTTCGAATCAATGACACCTCACTC
65 ATGAGAAGAACTTGTTCAACCT-T-AGCTCGATTCACGACATTTCGAATCAACAACACCTCACTC
* * **
1485175 GAGGGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCTGATGAAGGAGAAGAAG
128 AAGGGATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCAATGAAGGAGAAGAAG
* * * *
1485240 TTTATAATGAGAATAACTTGTTCAATCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAAT
193 TTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAAC
*
1485305 ACCTCACTTG-AGGAAT
258 ACCTCACTCGAAGG-AT
* *
1485321 CAATATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCATAT
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCATAA
* * *
1485386 TGAGAAAAAACTTGTTCAACCTTAGCTCGATTTGTCAC-ATATGGAGTT-GAATCAGCAACACCT
66 TGAG-AAGAACTTGTTCAACCTTAGCTCGA--T-TCACGACAT----TTCGAATCAACAACACCT
*
1485449 CACTCAAGGGATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTTATCCAATGAAGGAGA
123 CACTCAAGGGATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCAATGAAGGAGA
*
1485514 AGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATGACATATGGAGTTGAATCA
188 AGAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCA
* *
1485579 TCAACACCTCACTCGAATGAT
253 GCAACACCTCACTCGAAGGAT
* * * * *
1485600 CAACCTATCCAGTGGAGAGTTCATAATGAGAACAACTCATCCGATAAAGGAGAAGAAGTTCATAA
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCATAA
1485665 TGAGAAGAACTTGTTCAACCTTAGC
66 TGAGAAGAACTTGTTCAACCTTAGC
1485690 ATGTTTCCAT
Statistics
Matches: 325, Mismatches: 33, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
273 10 0.03
274 60 0.18
275 14 0.04
276 4 0.01
277 4 0.01
278 20 0.06
279 209 0.64
280 4 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (273 bp):
CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCATAA
TGAGAAGAACTTGTTCAACCTTAGCTCGATTCACGACATTTCGAATCAACAACACCTCACTCAAG
GGATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCAATGAAGGAGAAGAAGTTC
ATAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACC
TCACTCGAAGGAT
Found at i:1485973 original size:12 final size:11
Alignment explanation
Indices: 1485956--1486010 Score: 56
Period size: 12 Copynumber: 4.7 Consensus size: 11
1485946 ATTTTTAAAA
1485956 TATTATTGTAAT
1 TATTATT-TAAT
*
1485968 TATTATTAATAT
1 TATTATTTA-AT
*
1485980 TATTATTATTAT
1 TATTATT-TAAT
*
1485992 TATTATTTAAG
1 TATTATTTAAT
1486003 TATTATTT
1 TATTATTT
1486011 TATTTTCTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
11 11 0.31
12 25 0.69
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (11 bp):
TATTATTTAAT
Found at i:1486009 original size:3 final size:3
Alignment explanation
Indices: 1485956--1485998 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
1485946 ATTTTTAAAA
* * *
1485956 TAT TAT TGT AAT TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1485999 TAAGTATTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:1486012 original size:12 final size:12
Alignment explanation
Indices: 1485966--1486009 Score: 61
Period size: 12 Copynumber: 3.5 Consensus size: 12
1485956 TATTATTGTA
1485966 ATTATTATTAAT
1 ATTATTATTAAT
*
1485978 ATTATTATTATT
1 ATTATTATTAAT
1485990 ATTATTATTTAAGT
1 ATTATTA-TTAA-T
1486004 ATTATT
1 ATTATT
1486010 TTATTTTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 18 0.64
13 3 0.11
14 7 0.25
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (12 bp):
ATTATTATTAAT
Found at i:1497385 original size:24 final size:24
Alignment explanation
Indices: 1497358--1497405 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
1497348 TGTGACACAC
* *
1497358 TTTTCTCTGCTCTTGTGGCACGTT
1 TTTTCTATGCTCTTATGGCACGTT
1497382 TTTTCTATGCTCTTATGGCACGTT
1 TTTTCTATGCTCTTATGGCACGTT
1497406 CCTTATGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.08, C:0.23, G:0.19, T:0.50
Consensus pattern (24 bp):
TTTTCTATGCTCTTATGGCACGTT
Found at i:1504207 original size:333 final size:333
Alignment explanation
Indices: 1503601--1504271 Score: 1333
Period size: 333 Copynumber: 2.0 Consensus size: 333
1503591 TTGAGTATTG
1503601 TAATTATAAGGTAATATATGTTCTAAAGATTTTCAACGATTTGACAATGAAAATTCATCATCCTT
1 TAATTATAAGGTAATATATGTTCTAAAGATTTTCAACGATTTGACAATGAAAATTCATCATCCTT
1503666 ACTGTTTTTGATACTCGAACATAAAACCTCTAGAGATAACAATAATTCATTTAATCATTGAAATA
66 ACTGTTTTTGATACTCGAACATAAAACCTCTAGAGATAACAATAATTCATTTAATCATTGAAATA
1503731 ATTTGATTCGTACGAGTGTCACCTTAACTAGAACATTGGCATGAGATTTTTTTTATTTGCCAATA
131 ATTTGATTCGTACGAGTGTCACCTTAACTAGAACATTGGCATGAGATTTTTTTTATTTGCCAATA
1503796 AATTGTACTATATATGAATTTAAAAAGTGTTGTTCTCCCTTGAAATCTTGAGTTTAAATAGTTAT
196 AATTGTACTATATATGAATTTAAAAAGTGTTGTTCTCCCTTGAAATCTTGAGTTTAAATAGTTAT
1503861 GTCTGTACGATAAATGCATTGTCAGTGTTGTATTTGGGTCTGGACCAGGGCCCATAATTATAAAA
261 GTCTGTACGATAAATGCATTGTCAGTGTTGTATTTGGGTCTGGACCAGGGCCCATAATTATAAAA
1503926 TTAAAATA
326 TTAAAATA
1503934 TAATTATAAGGTAATATATGTTCTAAAGATTTTCAACGATTTGACAATGAAAATTCATCATCCTT
1 TAATTATAAGGTAATATATGTTCTAAAGATTTTCAACGATTTGACAATGAAAATTCATCATCCTT
1503999 ACTGTTTTTGATACTCGAACATAAAACCTCTAGAGATAACAATAATTCATTTAATCATTGAAATA
66 ACTGTTTTTGATACTCGAACATAAAACCTCTAGAGATAACAATAATTCATTTAATCATTGAAATA
1504064 ATTTGATTCGTACGAGTGTCACCTTAACTAGAACATTGGCATGAGATTTTTTTTATTTGCCAATA
131 ATTTGATTCGTACGAGTGTCACCTTAACTAGAACATTGGCATGAGATTTTTTTTATTTGCCAATA
*
1504129 AATTGTACTATATATGAATTTAAAAATTGTTGTTCTCCCTTGAAATCTTGAGTTTAAATAGTTAT
196 AATTGTACTATATATGAATTTAAAAAGTGTTGTTCTCCCTTGAAATCTTGAGTTTAAATAGTTAT
1504194 GTCTGTACGATAAATGCATTGTCAGTGTTGTATTTGGGTCTGGACCAGGGCCCATAATTATAAAA
261 GTCTGTACGATAAATGCATTGTCAGTGTTGTATTTGGGTCTGGACCAGGGCCCATAATTATAAAA
1504259 TTAAAATA
326 TTAAAATA
1504267 TAATT
1 TAATT
1504272 TTTAGAAATT
Statistics
Matches: 337, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
333 337 1.00
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (333 bp):
TAATTATAAGGTAATATATGTTCTAAAGATTTTCAACGATTTGACAATGAAAATTCATCATCCTT
ACTGTTTTTGATACTCGAACATAAAACCTCTAGAGATAACAATAATTCATTTAATCATTGAAATA
ATTTGATTCGTACGAGTGTCACCTTAACTAGAACATTGGCATGAGATTTTTTTTATTTGCCAATA
AATTGTACTATATATGAATTTAAAAAGTGTTGTTCTCCCTTGAAATCTTGAGTTTAAATAGTTAT
GTCTGTACGATAAATGCATTGTCAGTGTTGTATTTGGGTCTGGACCAGGGCCCATAATTATAAAA
TTAAAATA
Found at i:1508304 original size:31 final size:31
Alignment explanation
Indices: 1508266--1508331 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
1508256 ACAATCCACA
* *
1508266 ACAATGGATAATTAGATATAAATCTGTACAT
1 ACAATGGATAATTAGATACAAATCTGTAAAT
*
1508297 ACAATGGATGATTAGATACAAATCTGTAAAT
1 ACAATGGATAATTAGATACAAATCTGTAAAT
1508328 ACAA
1 ACAA
1508332 GAAAACTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.29
Consensus pattern (31 bp):
ACAATGGATAATTAGATACAAATCTGTAAAT
Found at i:1514772 original size:78 final size:79
Alignment explanation
Indices: 1514618--1514772 Score: 201
Period size: 79 Copynumber: 2.0 Consensus size: 79
1514608 ATGCATTTCA
* * *
1514618 TGCATCGATGCACATACCATGCACCAATGCACTGAGGATTTTATGAAGACATCGAATGCATTTGA
1 TGCATCGATGCACATACCATGCACCAATGCACTCAGGATTTTATGAAGACATCAAATGCACTTGA
1514683 TGCATCGATGCATG
66 TGCATCGATGCATG
* * *
1514697 TGCATCGATGCAC-TAGCCATGCATCGATGCACTCTGGCTATTTT-T-AA-ACATCAAATGCACT
1 TGCATCGATGCACATA-CCATGCACCAATGCACTCAGG--ATTTTATGAAGACATCAAATGCACT
1514758 TGATGCATCGATGCA
63 TGATGCATCGATGCA
1514773 CTCTTAGTGC
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
78 29 0.43
79 32 0.48
80 1 0.01
81 5 0.07
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (79 bp):
TGCATCGATGCACATACCATGCACCAATGCACTCAGGATTTTATGAAGACATCAAATGCACTTGA
TGCATCGATGCATG
Found at i:1514773 original size:17 final size:19
Alignment explanation
Indices: 1514751--1514793 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
1514741 TAAACATCAA
*
1514751 ATGCACT-TGA-TGCATCG
1 ATGCACTCTGAGTGCACCG
*
1514768 ATGCACTCTTAGTGCACCG
1 ATGCACTCTGAGTGCACCG
1514787 ATGCACT
1 ATGCACT
1514794 AAGGGTCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 2 0.09
19 13 0.59
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (19 bp):
ATGCACTCTGAGTGCACCG
Found at i:1518219 original size:137 final size:138
Alignment explanation
Indices: 1517967--1518215 Score: 369
Period size: 137 Copynumber: 1.8 Consensus size: 138
1517957 GAAATTTTAT
* * * * *
1517967 AAAATGGAGGCTCTAATATCGATTCAAATTGATTTTAACCAATTATTGAATCGAATAATTGAAAT
1 AAAATGGAGGCTCTAATATCAATCCAAATCGATTTTAACCAATTATTGAATCAAATAATCGAAAT
*
1518032 GGATCCTCGGACACTAAGGCGAGAGCCAAATCGAATATTTCCTAAATTAAAGGATTAAAGTGAAA
66 GGACCCTCGGACACTAAGGCGAGAGCCAAATCGAATATTTCCTAAATTAAAGGATTAAAGTGAAA
1518097 TTAAGCCC
131 TTAAGCCC
* *
1518105 AAAA-GGAGGCTCTAATTTCAATCCTAATCGATTTTAACCAATTATTGAATCAAATAATCGAAAT
1 AAAATGGAGGCTCTAATATCAATCCAAATCGATTTTAACCAATTATTGAATCAAATAATCGAAAT
* * *
1518169 -GACCCTCGGACATTAAGGTGA-AGGCCAAATTGAATATTTCCTAAATT
66 GGACCCTCGGACACTAAGGCGAGA-GCCAAATCGAATATTTCCTAAATT
1518216 TAAAAGTTTA
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
135 1 0.01
136 41 0.41
137 53 0.54
138 4 0.04
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (138 bp):
AAAATGGAGGCTCTAATATCAATCCAAATCGATTTTAACCAATTATTGAATCAAATAATCGAAAT
GGACCCTCGGACACTAAGGCGAGAGCCAAATCGAATATTTCCTAAATTAAAGGATTAAAGTGAAA
TTAAGCCC
Found at i:1519619 original size:17 final size:17
Alignment explanation
Indices: 1519594--1519632 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
1519584 GAATAAGTTC
* **
1519594 TTCTAATTAGGACGTTA
1 TTCTCATTAGGAAATTA
1519611 TTCTCATTAGGAAATTA
1 TTCTCATTAGGAAATTA
1519628 TTCTC
1 TTCTC
1519633 CCTCATCGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (17 bp):
TTCTCATTAGGAAATTA
Found at i:1519822 original size:117 final size:117
Alignment explanation
Indices: 1519611--1520035 Score: 460
Period size: 117 Copynumber: 3.6 Consensus size: 117
1519601 TAGGACGTTA
* * * *
1519611 TTCTCATTAGGAAATTATTCTCCCTCATCGGACAAGTTATTCTCATTAGGAACTCTTCAACTGGA
1 TTCTCATTAGGAATTTCTTCTCCCTCATCGGACAAGTTATTCTCATTAGGAACCCTTCCACTGGA
* * *
1519676 AAATGCTGATTCAACTCCTTATGTGATGGATGAGCCAAGGTTGAACAAGTTC
66 AAATGCTGATCCAACTACTTATGTGATGGATAAGCCAAGGTTGAACAAGTTC
* * * * *
1519728 TTTTCATTAGGAACTTCTTCTCCCTCATTGGACGAGTTATTCTCATTAGGAACCCTTCCACTCGA
1 TTCTCATTAGGAATTTCTTCTCCCTCATCGGACAAGTTATTCTCATTAGGAACCCTTCCACTGGA
* * *
1519793 AAATGTTGATCCAACTACTTATGTTATGGATAAGCCAAGATTGAACAAGTTC
66 AAATGCTGATCCAACTACTTATGTGATGGATAAGCCAAGGTTGAACAAGTTC
* * * * * ** * * * *
1519845 CTCTCATTAGGATTTTTTTCTCCCTCATCAGATAAACTCTTCTCATCCA-AAACCCTTCTACTGG
1 TTCTCATTAGGAATTTCTTCTCCCTCATCGGACAAGTTATTCTCAT-TAGGAACCCTTCCACTGG
* * * * * *
1519909 AAAACGCTGATTCAACTTCTTATGTGATGGGTCAGCCAAGGATGAACAAGTTC
65 AAAATGCTGATCCAACTACTTATGTGATGGATAAGCCAAGGTTGAACAAGTTC
* ** * * * *
1519962 TTCTC-TTATGAATTTCTTCTCCCTCATCGGATGAGTTCTTCTCATTAAGAACTCTTCCATTGG-
1 TTCTCATTAGGAATTTCTTCTCCCTCATCGGACAAGTTATTCTCATTAGGAACCCTTCCACTGGA
*
1520025 AAATGTTGATC
66 AAATGCTGATC
1520036 TATCTTCACT
Statistics
Matches: 251, Mismatches: 55, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
115 9 0.04
116 44 0.18
117 197 0.78
118 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (117 bp):
TTCTCATTAGGAATTTCTTCTCCCTCATCGGACAAGTTATTCTCATTAGGAACCCTTCCACTGGA
AAATGCTGATCCAACTACTTATGTGATGGATAAGCCAAGGTTGAACAAGTTC
Found at i:1523066 original size:21 final size:21
Alignment explanation
Indices: 1523016--1523076 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
1523006 GGTAGTTAGT
* * *
1523016 TAGTGTAGTTAGCTATCTAGG
1 TAGTGTAGGTAGCTAGCTAAG
*
1523037 TAGCT-TAGGTAACTAGCTAAG
1 TAG-TGTAGGTAGCTAGCTAAG
1523058 TAGTGTAGGTAGCTAGCTA
1 TAGTGTAGGTAGCTAGCTA
1523077 CGTACCTAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.94
22 1 0.03
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (21 bp):
TAGTGTAGGTAGCTAGCTAAG
Found at i:1529003 original size:20 final size:20
Alignment explanation
Indices: 1528967--1529004 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1528957 TTATAATTTA
*
1528967 TGATTTTGATTTATTTGGCT
1 TGATTTTGAATTATTTGGCT
1528987 TGATTATTGAATT-TTTGG
1 TGATT-TTGAATTATTTGG
1529005 GTTTTAATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.18, C:0.03, G:0.21, T:0.58
Consensus pattern (20 bp):
TGATTTTGAATTATTTGGCT
Found at i:1538941 original size:18 final size:18
Alignment explanation
Indices: 1538914--1538967 Score: 72
Period size: 21 Copynumber: 2.8 Consensus size: 18
1538904 ATTTTCCAAT
1538914 AATTGGTATCTTTTTAAC
1 AATTGGTATCTTTTTAAC
*
1538932 AATTGATATCATTTTGTTAAC
1 AATTGGTATC--TTT-TTAAC
1538953 AATTGGTATCTTTTT
1 AATTGGTATCTTTTT
1538968 CATTAAACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
18 11 0.35
19 3 0.10
20 3 0.10
21 14 0.45
ACGTcount: A:0.28, C:0.09, G:0.11, T:0.52
Consensus pattern (18 bp):
AATTGGTATCTTTTTAAC
Found at i:1539316 original size:32 final size:34
Alignment explanation
Indices: 1539256--1539354 Score: 148
Period size: 32 Copynumber: 2.9 Consensus size: 34
1539246 AATGCAAATA
*
1539256 GGGTACCGATACCCCCCAGGGGTATCCATACTCC
1 GGGTACCGATACCCCCTAGGGGTATCCATACTCC
*
1539290 GGGTACCGAT-GCCCCTA-GGGTATCCATACTCC
1 GGGTACCGATACCCCCTAGGGGTATCCATACTCC
1539322 GGGTACCGATACCCCCTGTAGGGGTATCCATAC
1 GGGTACCGATACCCCC--TAGGGGTATCCATAC
1539355 CCCCTAGCTG
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
32 25 0.43
33 9 0.16
34 10 0.17
35 2 0.03
36 12 0.21
ACGTcount: A:0.20, C:0.34, G:0.25, T:0.20
Consensus pattern (34 bp):
GGGTACCGATACCCCCTAGGGGTATCCATACTCC
Found at i:1539333 original size:15 final size:15
Alignment explanation
Indices: 1539283--1539333 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
1539273 AGGGGTATCC
1539283 ATACTCCGGGTACCG
1 ATACTCCGGGTACCG
* *
1539298 ATGCCCCTAGGGTATCC-
1 ATACTCC--GGGTA-CCG
1539315 ATACTCCGGGTACCG
1 ATACTCCGGGTACCG
1539330 ATAC
1 ATAC
1539334 CCCCTGTAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
14 2 0.07
15 14 0.50
17 10 0.36
18 2 0.07
ACGTcount: A:0.22, C:0.33, G:0.24, T:0.22
Consensus pattern (15 bp):
ATACTCCGGGTACCG
Found at i:1540680 original size:12 final size:12
Alignment explanation
Indices: 1540659--1540688 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1540649 TTGTAAATCG
1540659 ATCTCAATCTCT
1 ATCTCAATCTCT
*
1540671 ATCTCTATCTCT
1 ATCTCAATCTCT
1540683 ATCTCA
1 ATCTCA
1540689 GTTTCTCCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.23, C:0.33, G:0.00, T:0.43
Consensus pattern (12 bp):
ATCTCAATCTCT
Found at i:1543491 original size:20 final size:20
Alignment explanation
Indices: 1543466--1543538 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
1543456 AAAGGTTCAT
*
1543466 AGGTCCTTCGAGACATACAA
1 AGGTCCTTCGGGACATACAA
1543486 AGGTCCTTCGGGACATACAA
1 AGGTCCTTCGGGACATACAA
* *
1543506 AGGTCCTTTGGGACATACAG
1 AGGTCCTTCGGGACATACAA
*
1543526 AGGTCCTGCGGGA
1 AGGTCCTTCGGGA
1543539 TAATTTCACA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (20 bp):
AGGTCCTTCGGGACATACAA
Found at i:1544596 original size:16 final size:16
Alignment explanation
Indices: 1544575--1544608 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
1544565 GGATGAAAAG
1544575 AGTAAAATAAAA-TAAA
1 AGTAAAA-AAAATTAAA
1544591 AGTAAAAAAAATTAAA
1 AGTAAAAAAAATTAAA
1544607 AG
1 AG
1544609 ATTATAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.18
Consensus pattern (16 bp):
AGTAAAAAAAATTAAA
Found at i:1545526 original size:23 final size:22
Alignment explanation
Indices: 1545488--1545535 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
1545478 TTGTTTATTG
1545488 GACCTTCTACAAGCTACTGACTA
1 GACCTTCTACAAGCTACTGAC-A
* * *
1545511 GACCTTCTAGATGCTATTGACA
1 GACCTTCTACAAGCTACTGACA
1545533 GAC
1 GAC
1545536 TGCACATCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (22 bp):
GACCTTCTACAAGCTACTGACA
Found at i:1547117 original size:175 final size:175
Alignment explanation
Indices: 1546826--1547176 Score: 702
Period size: 175 Copynumber: 2.0 Consensus size: 175
1546816 CCAAACACTG
1546826 ATAATAAGAACATGTCAAGCAAAAAATCTTCCTTTGGGTTGATTTATTACTCACACATAAAACCT
1 ATAATAAGAACATGTCAAGCAAAAAATCTTCCTTTGGGTTGATTTATTACTCACACATAAAACCT
1546891 AATAATTATCACATGCTTATTACTAAAGTTGTACATGCAGAAAAATTTAGGTTCAAAATAACAAT
66 AATAATTATCACATGCTTATTACTAAAGTTGTACATGCAGAAAAATTTAGGTTCAAAATAACAAT
1546956 AGAGAGTAAGTAGATATTTCAACATCAAATCATTTGAAAAATTTA
131 AGAGAGTAAGTAGATATTTCAACATCAAATCATTTGAAAAATTTA
1547001 ATAATAAGAACATGTCAAGCAAAAAATCTTCCTTTGGGTTGATTTATTACTCACACATAAAACCT
1 ATAATAAGAACATGTCAAGCAAAAAATCTTCCTTTGGGTTGATTTATTACTCACACATAAAACCT
1547066 AATAATTATCACATGCTTATTACTAAAGTTGTACATGCAGAAAAATTTAGGTTCAAAATAACAAT
66 AATAATTATCACATGCTTATTACTAAAGTTGTACATGCAGAAAAATTTAGGTTCAAAATAACAAT
1547131 AGAGAGTAAGTAGATATTTCAACATCAAATCATTTGAAAAATTTA
131 AGAGAGTAAGTAGATATTTCAACATCAAATCATTTGAAAAATTTA
1547176 A
1 A
1547177 GGCTCCCCCT
Statistics
Matches: 176, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
175 176 1.00
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (175 bp):
ATAATAAGAACATGTCAAGCAAAAAATCTTCCTTTGGGTTGATTTATTACTCACACATAAAACCT
AATAATTATCACATGCTTATTACTAAAGTTGTACATGCAGAAAAATTTAGGTTCAAAATAACAAT
AGAGAGTAAGTAGATATTTCAACATCAAATCATTTGAAAAATTTA
Found at i:1548075 original size:21 final size:20
Alignment explanation
Indices: 1548038--1548082 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1548028 TCAAAATAAA
* * *
1548038 TTTTCAAAATTTCATTTTGT
1 TTTTCAAAAATCCATTTTGC
1548058 TTTTCAAAAATCCAATTTTGC
1 TTTTCAAAAATCC-ATTTTGC
1548079 TTTT
1 TTTT
1548083 AAATCCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56
Consensus pattern (20 bp):
TTTTCAAAAATCCATTTTGC
Found at i:1549361 original size:21 final size:21
Alignment explanation
Indices: 1549331--1549371 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1549321 CATATATAAG
*
1549331 GTAAACATAGTTTAA-AATTA
1 GTAAACATAGTCTAATAATTA
1549351 GTAAATCATAGTCTAATAATT
1 GTAAA-CATAGTCTAATAATT
1549372 CTTTCATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (21 bp):
GTAAACATAGTCTAATAATTA
Found at i:1550177 original size:28 final size:27
Alignment explanation
Indices: 1550133--1550193 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 27
1550123 CCTAAGCCAT
*
1550133 AAGGGTATTTAGGTCATTTTGGAGCTC
1 AAGGGTATTTAGGTCATTTTAGAGCTC
*
1550160 AAGGGTAATTT-GGATCATTTTATAGCTC
1 AAGGGT-ATTTAGG-TCATTTTAGAGCTC
1550188 AAGGGT
1 AAGGGT
1550194 TATTGTAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 8 0.27
28 22 0.73
ACGTcount: A:0.26, C:0.10, G:0.28, T:0.36
Consensus pattern (27 bp):
AAGGGTATTTAGGTCATTTTAGAGCTC
Found at i:1551813 original size:19 final size:19
Alignment explanation
Indices: 1551791--1551842 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
1551781 AAGTTGTTTT
1551791 TTAAAATAAAAAATAAGAA
1 TTAAAATAAAAAATAAGAA
* *
1551810 TTAAATATAAGAAA-AATAA
1 TTAAA-ATAAAAAATAAGAA
1551829 TT-AAATAAACAAAT
1 TTAAAATAAA-AAAT
1551843 TAAAGAGATC
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
17 4 0.15
18 5 0.19
19 11 0.41
20 7 0.26
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (19 bp):
TTAAAATAAAAAATAAGAA
Found at i:1552587 original size:19 final size:19
Alignment explanation
Indices: 1552563--1552600 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1552553 AAATAACATC
*
1552563 CTAAAACTTAATTAAAATA
1 CTAAAACCTAATTAAAATA
*
1552582 CTAAAACCTATTTAAAATA
1 CTAAAACCTAATTAAAATA
1552601 AAATACAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (19 bp):
CTAAAACCTAATTAAAATA
Found at i:1554332 original size:12 final size:12
Alignment explanation
Indices: 1554310--1554338 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1554300 AAGTTTGCTG
1554310 AAAAT-AAAACA
1 AAAATAAAAACA
1554321 AAAATAAAAACA
1 AAAATAAAAACA
1554333 AAAATA
1 AAAATA
1554339 TAACGAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.10
Consensus pattern (12 bp):
AAAATAAAAACA
Found at i:1560485 original size:24 final size:24
Alignment explanation
Indices: 1560439--1560485 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
1560429 AAATCCTAAT
** **
1560439 TAAAATACTAAAACCTATTTAAAC
1 TAAAATACTAAAACAAAGATAAAC
1560463 TAAAATACTAAAACAAAGATAAA
1 TAAAATACTAAAACAAAGATAAA
1560486 ATATAAAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.62, C:0.13, G:0.02, T:0.23
Consensus pattern (24 bp):
TAAAATACTAAAACAAAGATAAAC
Found at i:1562920 original size:29 final size:29
Alignment explanation
Indices: 1562871--1562927 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
1562861 CATTATTGTT
1562871 CACTTTGATGTTCTTGCTTTTGCTTTTTA
1 CACTTTGATGTTCTTGCTTTTGCTTTTTA
* * * *
1562900 CACTTTGTTGTTGTTGTTTTTGTTTTTT
1 CACTTTGATGTTCTTGCTTTTGCTTTTT
1562928 TTTTTGTCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.07, C:0.12, G:0.16, T:0.65
Consensus pattern (29 bp):
CACTTTGATGTTCTTGCTTTTGCTTTTTA
Found at i:1566774 original size:124 final size:124
Alignment explanation
Indices: 1566635--1566893 Score: 464
Period size: 124 Copynumber: 2.1 Consensus size: 124
1566625 TCAATAAATG
*
1566635 AACATTGCCTTAAATTAAAAAACATGATACAAGAATTAAAAAGAATATCAATTTTATTTTGGGGA
1 AACATTTCCTTAAATTAAAAAACATGATACAAGAATTAAAAAGAATATCAATTTTATTTTGGGGA
*
1566700 TTAATAGTGGTCAACCCCAAGCAATTGAAGAGGATACACTATTAATAACCTAACTAATT
66 TTAATAGTGGTCAACCCCAAGCAATGGAAGAGGATACACTATTAATAACCTAACTAATT
* * *
1566759 AACATTTCCTTAAATTAAAAAACATTATATAAGATTTAAAAAGAATATCAATTTTATTTTGGGGA
1 AACATTTCCTTAAATTAAAAAACATGATACAAGAATTAAAAAGAATATCAATTTTATTTTGGGGA
*
1566824 TTAATAGTGGTCACCCCCAAGCAATGGAAGAGGATACACTATTAATAACCTAACTAATT
66 TTAATAGTGGTCAACCCCAAGCAATGGAAGAGGATACACTATTAATAACCTAACTAATT
1566883 AACATTTCCTT
1 AACATTTCCTT
1566894 GGTTTTGAAA
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
124 129 1.00
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (124 bp):
AACATTTCCTTAAATTAAAAAACATGATACAAGAATTAAAAAGAATATCAATTTTATTTTGGGGA
TTAATAGTGGTCAACCCCAAGCAATGGAAGAGGATACACTATTAATAACCTAACTAATT
Found at i:1568165 original size:23 final size:23
Alignment explanation
Indices: 1568130--1568177 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
1568120 ATCAAGTACA
*
1568130 ATAATATATTAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
*
1568153 ATAATGTAATAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
1568176 AT
1 AT
1568178 TGACCTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (23 bp):
ATAATATAATAGGTAGCGCTTAT
Found at i:1569010 original size:181 final size:182
Alignment explanation
Indices: 1568567--1569198 Score: 982
Period size: 182 Copynumber: 3.5 Consensus size: 182
1568557 TTTTTACTAT
* * * * *
1568567 CGGTTTTGTCATTTCGAGATCGATTTTGTTATATTTTTACCTGTTATATTGTTATGGATAGATAC
1 CGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGAATCGATAC
* * *
1568632 ATTTTTATAAAGTATCGACA-TTCTATTAGCGCTATAACTTTTTTTCTTTTAAATTCTAAAAGTG
66 ATTTTTATAAAGTATCGACACTT-TATTAGCGCTATAACTTATTATCTTTTAAATTCCAAAAGTG
*
1568696 TCGATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAACTCTTTAC
130 TCGATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAGCTCTTTAC
*
1568749 CGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACATGTTATATTGTTATGAATCGATAC
1 CGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGAATCGATAC
* *
1568814 ATTTTTATAAAGTATCAACACTTTATTAGCGCTATAACTTATTATCTTTCAAATTCCAAAAGTGT
66 ATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTATTATCTTTTAAATTCCAAAAGTGT
*
1568879 CGATACTTATAATAAAGTATCGACACTATCAATATATCCGG-AGCTCTTTAC
131 CGATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAGCTCTTTAC
* *
1568930 CGGTTTTGTCATTTCGATACCGATTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATAC
1 CGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGAATCGATAC
* *
1568995 ATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGT
66 ATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTATTATCTTTTAAATTCCAAAAGTGT
1569060 CGATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAG-TGCTTTAC
131 CGATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAGCT-CTTTAC
* ** * * * * * * *
1569112 CTGTTTTGTCATTTATAAACCGGTTTTGTCATTTTTTTACCTGTTTTATTGTTATAAATCGATGC
1 CGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGAATCGATAC
1569177 ATTTTTATAAAGTATCGACACT
66 ATTTTTATAAAGTATCGACACT
1569199 ATCAACATAT
Statistics
Matches: 415, Mismatches: 32, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
181 173 0.42
182 240 0.58
183 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (182 bp):
CGGTTTTGTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATGAATCGATAC
ATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTATTATCTTTTAAATTCCAAAAGTGT
CGATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAGCTCTTTAC
Found at i:1569157 original size:20 final size:20
Alignment explanation
Indices: 1569107--1569158 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
1569097 CCGGTAGTGC
1569107 TTTACCTGTTTTGTCATTTA
1 TTTACCTGTTTTGTCATTTA
** * *
1569127 TAAACCGGTTTTGTCATTTT
1 TTTACCTGTTTTGTCATTTA
1569147 TTTACCTGTTTT
1 TTTACCTGTTTT
1569159 ATTGTTATAA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.15, C:0.15, G:0.12, T:0.58
Consensus pattern (20 bp):
TTTACCTGTTTTGTCATTTA
Found at i:1569426 original size:112 final size:112
Alignment explanation
Indices: 1569071--1569645 Score: 882
Period size: 112 Copynumber: 5.1 Consensus size: 112
1569061 GATACTTATA
* * * *
1569071 ATAAAGTATCGACACTATCAACATATCCGGTAGTGCTTTACCTGTTTTGTCATTTATAAACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* ** *
1569136 TTTGTCATTTTTTTACCTGTTTTATTGTTATAAATCGATGCATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
* * *
1569183 ATAAAGTATCGACACTATCAACATATCCGGTAGCGCTTTACCTATTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* * *
1569248 TTTGTCA-TTTTTTACCTATTTTATTGTTATGGATCGATATATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
* * *
1569294 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGTTTTACCTGCTTTGTCATTTATAGACCGAT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
*
1569359 TTTGTCATTTTTTTACATGTTATATTGTTATGGATCGATACATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
* * *
1569406 ATAAAGTATTGACACTTTCAATATATTCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGAT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* *
1569471 TTGGTCATTTTTTTTACCTGTTATATTGTTATGGATAGATACATTTTT
66 TTTGTCA-TTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
* *
1569519 ATAAAGTATCGACACTTTCAATATATCCAGTAGCGCTTTACCTGTTTTGTCATTTATAAACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* * *
1569584 TTTGTCATTTTTTTACTTGTTATATTGTTATGGATCAATATATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
1569631 ATAAAGTATCGACAC
1 ATAAAGTATCGACAC
1569646 AAACCGATAA
Statistics
Matches: 426, Mismatches: 35, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
111 100 0.23
112 222 0.52
113 104 0.24
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.45
Consensus pattern (112 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
Found at i:1569459 original size:223 final size:224
Alignment explanation
Indices: 1569071--1569645 Score: 891
Period size: 223 Copynumber: 2.6 Consensus size: 224
1569061 GATACTTATA
* * *
1569071 ATAAAGTATCGACACTATCAACATATCCGGTAGTGCTTTACCTGTTTTGTCATTTATAAACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAAACCGGT
* * ** *
1569136 TTTGTCATTTTTTTACCTGTTTTATTGTTATAAATCGATGCATTTTTATAAAGTATCGACACTAT
66 TTTGTCATTTTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTAT
* *
1569201 CAACATATCCGGTAGCGCTTTACCTATTTTGTCATTTATAGACCGGTTTTGTCA-TTTTTTACCT
131 CAACATATCCGGTAGCGCTTTACCTATTTTGTCATTTATAGACCGATTTGGTCATTTTTTTACCT
* * *
1569265 ATTTTATTGTTATGGATCGATATATTTTT
196 ATTATATTGTTATGGATAGATACATTTTT
* * * *
1569294 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGTTTTACCTGCTTTGTCATTTATAGACCGAT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAAACCGGT
* *
1569359 TTTGTCATTTTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATTGACACTTT
66 TTTGTCATTTTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTAT
* * *
1569424 CAATATATTCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGATTTGGTCATTTTTTTTACC
131 CAACATATCCGGTAGCGCTTTACCTATTTTGTCATTTATAGACCGATTTGGTCA-TTTTTTTACC
*
1569489 TGTTATATTGTTATGGATAGATACATTTTT
195 TATTATATTGTTATGGATAGATACATTTTT
*
1569519 ATAAAGTATCGACACTTTCAATATATCCAGTAGCGCTTTACCTGTTTTGTCATTTATAAACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAAACCGGT
* * *
1569584 TTTGTCATTTTTTTACTTGTTATATTGTTATGGATCAATATATTTTTATAAAGTATCGACAC
66 TTTGTCATTTTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACAC
1569646 AAACCGATAA
Statistics
Matches: 318, Mismatches: 32, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
223 165 0.52
225 153 0.48
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.45
Consensus pattern (224 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAAACCGGT
TTTGTCATTTTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTAT
CAACATATCCGGTAGCGCTTTACCTATTTTGTCATTTATAGACCGATTTGGTCATTTTTTTACCT
ATTATATTGTTATGGATAGATACATTTTT
Found at i:1575684 original size:14 final size:14
Alignment explanation
Indices: 1575645--1575686 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
1575635 ACCTTCTCAA
1575645 TCTTCTTCTCTTCATT
1 TCTTCTT-TC-TCATT
1575661 TCTT-TATTCTCATT
1 TCTTCT-TTCTCATT
1575675 TCTTCTTTCTCA
1 TCTTCTTTCTCA
1575687 AGCTCCATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 15 0.62
15 4 0.17
16 5 0.21
ACGTcount: A:0.10, C:0.29, G:0.00, T:0.62
Consensus pattern (14 bp):
TCTTCTTTCTCATT
Found at i:1576189 original size:20 final size:20
Alignment explanation
Indices: 1576161--1576199 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1576151 ATATGCAATA
*
1576161 ATGGTTTCGAAACCCCCTAG
1 ATGGCTTCGAAACCCCCTAG
* *
1576181 ATGGCTTCGGAACCTCCTA
1 ATGGCTTCGAAACCCCCTA
1576200 AAAATAGCCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.26
Consensus pattern (20 bp):
ATGGCTTCGAAACCCCCTAG
Found at i:1585728 original size:56 final size:57
Alignment explanation
Indices: 1585650--1585802 Score: 191
Period size: 56 Copynumber: 2.7 Consensus size: 57
1585640 AAATTTTAAC
* * * *
1585650 TAGTTCATATGGTGGGCACGACCTTATGTGTCATACTCAGGATTGCACTAAAGTAT-
1 TAGTGCATATAGTGGGCACGACCTTATGTGTCATACTCAGGACTACACTAAAGTATA
* * **
1585706 TAGTGCATATAGTGGGCGCGACCTTATGTGTCATATTTGGGACTACACTAAAGTATAA
1 TAGTGCATATAGTGGGCACGACCTTATGTGTCATACTCAGGACTACACTAAAGTAT-A
* *
1585764 CTAGTGTAGATAGTGGGCACGACCTTATGTGTCATACTC
1 -TAGTGCATATAGTGGGCACGACCTTATGTGTCATACTC
1585803 GGGTTAGCAC
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
56 48 0.59
59 33 0.41
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (57 bp):
TAGTGCATATAGTGGGCACGACCTTATGTGTCATACTCAGGACTACACTAAAGTATA
Found at i:1585796 original size:59 final size:59
Alignment explanation
Indices: 1585622--1585799 Score: 220
Period size: 59 Copynumber: 3.1 Consensus size: 59
1585612 CAGCAGGTTG
* * *
1585622 CATATTTGGGATTGCACTAAATTTTAACTAGT-TCATATGGTGGGCACGACCTTATGTGT
1 CATATTTGGGATTGCACTAAAGTATAACTAGTGT-ATATAGTGGGCACGACCTTATGTGT
* ** * *
1585681 CATACTCAGGATTGCACTAAAGTAT---TAGTGCATATAGTGGGCGCGACCTTATGTGT
1 CATATTTGGGATTGCACTAAAGTATAACTAGTGTATATAGTGGGCACGACCTTATGTGT
* * *
1585737 CATATTTGGGACTACACTAAAGTATAACTAGTGTAGATAGTGGGCACGACCTTATGTGT
1 CATATTTGGGATTGCACTAAAGTATAACTAGTGTATATAGTGGGCACGACCTTATGTGT
1585796 CATA
1 CATA
1585800 CTCGGGTTAG
Statistics
Matches: 99, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
56 47 0.47
59 52 0.53
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (59 bp):
CATATTTGGGATTGCACTAAAGTATAACTAGTGTATATAGTGGGCACGACCTTATGTGT
Found at i:1593484 original size:22 final size:23
Alignment explanation
Indices: 1593445--1593488 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
1593435 TTAATAACCA
*
1593445 TTGGGTTTGACCAGTATCAATAC
1 TTGGGTTTCACCAGTATCAATAC
1593468 TTGGGTTTCA-CAGTATCAATA
1 TTGGGTTTCACCAGTATCAATA
1593489 TTGTAACACC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (23 bp):
TTGGGTTTCACCAGTATCAATAC
Found at i:1593838 original size:12 final size:12
Alignment explanation
Indices: 1593821--1593862 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
1593811 CTATTCACTT
1593821 CTACAGTAACTG
1 CTACAGTAACTG
1593833 CTACAGTAA--G
1 CTACAGTAACTG
*
1593843 CTACAGTAACTT
1 CTACAGTAACTG
1593855 CTACAGTA
1 CTACAGTA
1593863 CTTTCGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 10 0.37
12 17 0.63
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (12 bp):
CTACAGTAACTG
Found at i:1593849 original size:22 final size:22
Alignment explanation
Indices: 1593821--1593862 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
1593811 CTATTCACTT
1593821 CTACAGTAACTGCTACAGTAAG
1 CTACAGTAACTGCTACAGTAAG
*
1593843 CTACAGTAACTTCTACAGTA
1 CTACAGTAACTGCTACAGTA
1593863 CTTTCGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (22 bp):
CTACAGTAACTGCTACAGTAAG
Found at i:1594291 original size:45 final size:45
Alignment explanation
Indices: 1594242--1594348 Score: 162
Period size: 45 Copynumber: 2.4 Consensus size: 45
1594232 ATAAAATCGT
* * *
1594242 TTACCATTTATCCCATAAGCTCGTTAGCTTATTTTACCAATATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATACAC
*
1594287 TTACCATTTGTTCCATAAGCTCGTAAGCTTATTTTACCAATACAC
1 TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATACAC
*
1594332 TTGCCA-TTATTCCATAA
1 TTACCATTTATTCCATAA
1594349 CCATATACCA
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
44 10 0.18
45 46 0.82
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (45 bp):
TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATACAC
Found at i:1594370 original size:20 final size:20
Alignment explanation
Indices: 1594345--1594387 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
1594335 CCATTATTCC
* *
1594345 ATAACCATATACCATAGACA
1 ATAACCATAAACAATAGACA
1594365 ATAACCATAAACAATAGACA
1 ATAACCATAAACAATAGACA
1594385 ATA
1 ATA
1594388 GCCCAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.21, G:0.05, T:0.19
Consensus pattern (20 bp):
ATAACCATAAACAATAGACA
Found at i:1594550 original size:59 final size:59
Alignment explanation
Indices: 1594456--1594577 Score: 163
Period size: 59 Copynumber: 2.1 Consensus size: 59
1594446 CTATCCCAAG
* * * ** *
1594456 TATGACACATAAGGTTGTGTCCACCATCTGTACTAGGTATTCTTTAGTACAGTCCCGAA
1 TATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTTAGTACAGTCCCGAA
** *
1594515 TATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTTAGTGTATTCCCGAA
1 TATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTTAGTACAGTCCCGAA
1594574 TATG
1 TATG
1594578 CAGCCTGCTG
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (59 bp):
TATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTTAGTACAGTCCCGAA
Found at i:1599237 original size:11 final size:11
Alignment explanation
Indices: 1599221--1599281 Score: 56
Period size: 11 Copynumber: 5.6 Consensus size: 11
1599211 CCCTAAAAAA
1599221 GTCAACGGTCG
1 GTCAACGGTCG
1599232 GTCAACGG-CTG
1 GTCAACGGTC-G
1599243 GTCAACGGTCTG
1 GTCAACGGTC-G
*
1599255 ATCAACGGT-G
1 GTCAACGGTCG
* *
1599265 ATCAAC-GCCG
1 GTCAACGGTCG
1599275 GTCAACG
1 GTCAACG
1599282 ATTAACTGCT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
9 1 0.02
10 14 0.33
11 17 0.40
12 11 0.26
ACGTcount: A:0.23, C:0.28, G:0.31, T:0.18
Consensus pattern (11 bp):
GTCAACGGTCG
Found at i:1599246 original size:22 final size:21
Alignment explanation
Indices: 1599221--1599281 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
1599211 CCCTAAAAAA
1599221 GTCAACGGTCGGTCAACGGCTG
1 GTCAACGGTCGGTCAACGG-TG
*
1599243 GTCAACGGTCTGATCAACGGTG
1 GTCAACGGTC-GGTCAACGGTG
* *
1599265 ATCAAC-GCCGGTCAACG
1 GTCAACGGTCGGTCAACG
1599282 ATTAACTGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
20 7 0.21
21 2 0.06
22 17 0.50
23 8 0.24
ACGTcount: A:0.23, C:0.28, G:0.31, T:0.18
Consensus pattern (21 bp):
GTCAACGGTCGGTCAACGGTG
Found at i:1599261 original size:12 final size:11
Alignment explanation
Indices: 1599233--1599271 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
1599223 CAACGGTCGG
*
1599233 TCAACGGCTGG
1 TCAACGGCTGA
1599244 TCAACGGTCTGA
1 TCAACGG-CTGA
1599256 TCAACGG-TGA
1 TCAACGGCTGA
1599266 TCAACG
1 TCAACG
1599272 CCGGTCAACG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 9 0.35
11 7 0.27
12 10 0.38
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.21
Consensus pattern (11 bp):
TCAACGGCTGA
Found at i:1603932 original size:19 final size:19
Alignment explanation
Indices: 1603908--1603947 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
1603898 TAAATATTAT
*
1603908 TTTAAAATATTTTATGATA
1 TTTAAAATATTTGATGATA
1603927 TTTAAAATATTTGATGATA
1 TTTAAAATATTTGATGATA
1603946 TT
1 TT
1603948 CAAATTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (19 bp):
TTTAAAATATTTGATGATA
Found at i:1605081 original size:130 final size:130
Alignment explanation
Indices: 1604719--1605111 Score: 680
Period size: 130 Copynumber: 3.0 Consensus size: 130
1604709 TCGCTCAAGT
*
1604719 CTGATTTGCTAGTCTTTCAATAGTTTGATCCCTTATTCATCGGGGGAATGATAACTACGAGTTAA
1 CTGATTTGCTAGTCTTTCAATAGTTTGATCCCTTATTCACCGGGGGAATGATAACTACGAGTTAA
* *
1604784 TCATATTATTCTCGAGTCATCATATTCTCATGCCTTAGCATAAGATCCTGCCTCCACAAAGGAGT
66 TCATATTATTCTCGAGTCATCATATTCTCATGCCTTAGCATAAGATCATGCCTCCACAAAGGAGC
* *
1604849 TTGATTTGCTTGTCTTTCAATAGTTTGATCCCTTATTCACCGAGGGGAATGATAACTACGAGTTA
1 CTGATTTGCTAGTCTTTCAATAGTTTGATCCCTTATTCACCG-GGGGAATGATAACTACGAGTTA
* *
1604914 ATCATATTATTCTCGAGTCATCAGATTCTCATGCCTTAGCATAAGATCTTGCCTCCACAAAAGGA
65 ATCATATTATTCTCGAGTCATCATATTCTCATGCCTTAGCATAAGATCATGCCTCCAC-AAAGGA
1604979 GC
129 GC
1604981 CTGATTTGCTAGTCTTTCAATAGTTTGATCCCTTATTCACCGGGGG-ATGATAACTACGAGTTAA
1 CTGATTTGCTAGTCTTTCAATAGTTTGATCCCTTATTCACCGGGGGAATGATAACTACGAGTTAA
* *
1605045 TCATATTATTCTCGAGTCATGATATTCTCATACCTTAGCATAAGATCATGCCTCCACAAAGGAGC
66 TCATATTATTCTCGAGTCATCATATTCTCATGCCTTAGCATAAGATCATGCCTCCACAAAGGAGC
1605110 CT
1 CT
1605112 TTAAAGCCCT
Statistics
Matches: 249, Mismatches: 12, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
129 10 0.04
130 110 0.44
131 82 0.33
132 47 0.19
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (130 bp):
CTGATTTGCTAGTCTTTCAATAGTTTGATCCCTTATTCACCGGGGGAATGATAACTACGAGTTAA
TCATATTATTCTCGAGTCATCATATTCTCATGCCTTAGCATAAGATCATGCCTCCACAAAGGAGC
Found at i:1606494 original size:124 final size:124
Alignment explanation
Indices: 1606274--1606521 Score: 469
Period size: 124 Copynumber: 2.0 Consensus size: 124
1606264 AAAACACAAT
*
1606274 CTACATGCCCCCTAATCAAATGTATCATACTCTTCAAGCAACACCGAAAGAACACCCTTATTGAT
1 CTACATGCCCCCTAATCAAATGTATCATACTCTTCAAGCAACACCGAAAGAACACCCTTACTGAT
*
1606339 GTCGATAGTTTTACTGGTTTAAACCTTTTAACCTGAAAAGGGTGAGTAACAAAGTAAGC
66 GTCGATAGTTGTACTGGTTTAAACCTTTTAACCTGAAAAGGGTGAGTAACAAAGTAAGC
*
1606398 CTACATGCCCCCTAATCAAATGTATCATACTCTTCAAGCAACGCCGAAAGAACACCCTTACTGAT
1 CTACATGCCCCCTAATCAAATGTATCATACTCTTCAAGCAACACCGAAAGAACACCCTTACTGAT
1606463 GTCGATAGTTGTACTGGTTTAAACCTTTTAACCTGAAAAGGGTGAGTAACAAAGTAAGC
66 GTCGATAGTTGTACTGGTTTAAACCTTTTAACCTGAAAAGGGTGAGTAACAAAGTAAGC
1606522 TTTGGGAGGC
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 121 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (124 bp):
CTACATGCCCCCTAATCAAATGTATCATACTCTTCAAGCAACACCGAAAGAACACCCTTACTGAT
GTCGATAGTTGTACTGGTTTAAACCTTTTAACCTGAAAAGGGTGAGTAACAAAGTAAGC
Found at i:1612533 original size:20 final size:20
Alignment explanation
Indices: 1612496--1612534 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1612486 AGATCGAGTG
* * *
1612496 GATTTTGATGTTGTTTGCAC
1 GATTTTAATGATGATTGCAC
1612516 GATTTTAATGATGATTGCA
1 GATTTTAATGATGATTGCA
1612535 AGTTTAGGAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (20 bp):
GATTTTAATGATGATTGCAC
Found at i:1612762 original size:21 final size:23
Alignment explanation
Indices: 1612714--1612764 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
1612704 ATTCCCCTGT
*
1612714 GGGGGGAATCGGTTCCCCTTCAA
1 GGGGGGAATCAGTTCCCCTTCAA
* *
1612737 AGGGGGAATTAGTT-CCC-TCAA
1 GGGGGGAATCAGTTCCCCTTCAA
1612758 GGGGGGA
1 GGGGGGA
1612765 TCGATTCCCT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 10 0.42
22 3 0.12
23 11 0.46
ACGTcount: A:0.22, C:0.20, G:0.39, T:0.20
Consensus pattern (23 bp):
GGGGGGAATCAGTTCCCCTTCAA
Found at i:1616452 original size:21 final size:20
Alignment explanation
Indices: 1616410--1616453 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
1616400 TCAAAAGAAG
*
1616410 TTTTAAGATCATCAATTTTC
1 TTTTAAGATCATCAATTATC
1616430 TTTTAATGATCATC-ATTGATC
1 TTTTAA-GATCATCAATT-ATC
1616451 TTT
1 TTT
1616454 GAAAGTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.27, C:0.14, G:0.07, T:0.52
Consensus pattern (20 bp):
TTTTAAGATCATCAATTATC
Found at i:1619118 original size:17 final size:17
Alignment explanation
Indices: 1619057--1619118 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 17
1619047 TTTTGTCAAC
1619057 GTCAAC-GTCAACGGT-
1 GTCAACAGTCAACGGTG
1619072 -T-AACAGTCAACGGTG
1 GTCAACAGTCAACGGTG
** *
1619087 GTCAATGGTCCACGGTG
1 GTCAACAGTCAACGGTG
*
1619104 GTCAACAATCAACGG
1 GTCAACAGTCAACGG
1619119 CTCGGTCCAG
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
13 3 0.08
14 10 0.28
16 1 0.03
17 22 0.61
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.19
Consensus pattern (17 bp):
GTCAACAGTCAACGGTG
Found at i:1621678 original size:17 final size:17
Alignment explanation
Indices: 1621648--1621681 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1621638 AGGATGATTG
*
1621648 TTATCCTTAGAAGTCTC
1 TTATCCTTAAAAGTCTC
*
1621665 TTATCTTTAAAAGTCTC
1 TTATCCTTAAAAGTCTC
1621682 GGGTTTGAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.44
Consensus pattern (17 bp):
TTATCCTTAAAAGTCTC
Found at i:1622124 original size:42 final size:42
Alignment explanation
Indices: 1622065--1622153 Score: 101
Period size: 42 Copynumber: 2.1 Consensus size: 42
1622055 AACAATTCTC
* *
1622065 TTCATGAAAAGATTAAATCCTTTT-ATAAAAAGGTTAAGCCCT
1 TTCATAAAAAGATTAAAT-ATTTTAATAAAAAGGTTAAGCCCT
* * *
1622107 TTCATAAAAAGGA-TAAATATTTTAATCAAAAGGTTAAGTCTT
1 TTCATAAAAA-GATTAAATATTTTAATAAAAAGGTTAAGCCCT
1622149 TTCAT
1 TTCAT
1622154 CGAAAGATCT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
41 4 0.10
42 34 0.85
43 2 0.05
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (42 bp):
TTCATAAAAAGATTAAATATTTTAATAAAAAGGTTAAGCCCT
Found at i:1622150 original size:21 final size:21
Alignment explanation
Indices: 1622065--1622153 Score: 72
Period size: 21 Copynumber: 4.2 Consensus size: 21
1622055 AACAATTCTC
* * *
1622065 TTCATGAAAAGATTAAATCCTT
1 TTCATAAAAAGGTTAAGT-CTT
* *
1622087 TT-ATAAAAAGGTTAAGCCCT
1 TTCATAAAAAGGTTAAGTCTT
* * *
1622107 TTCATAAAAAGGATAAATATT
1 TTCATAAAAAGGTTAAGTCTT
* *
1622128 TTAATCAAAAGGTTAAGTCTT
1 TTCATAAAAAGGTTAAGTCTT
1622149 TTCAT
1 TTCAT
1622154 CGAAAGATCT
Statistics
Matches: 50, Mismatches: 16, Indels: 3
0.72 0.23 0.04
Matches are distributed among these distances:
20 4 0.08
21 44 0.88
22 2 0.04
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (21 bp):
TTCATAAAAAGGTTAAGTCTT
Found at i:1624556 original size:30 final size:30
Alignment explanation
Indices: 1624456--1624562 Score: 144
Period size: 30 Copynumber: 3.5 Consensus size: 30
1624446 ATGTCACCAC
*
1624456 TTTCGACATATGTCATATGTCACATCATCAC-
1 TTTCGAC--ATGTCATATGCCACATCATCACT
* *
1624487 TTTCGACATATCATATGCCACATCATCATT
1 TTTCGACATGTCATATGCCACATCATCACT
*
1624517 TTTCGACATGTCATATGCCACATCATTACT
1 TTTCGACATGTCATATGCCACATCATCACT
*
1624547 TTTCGACATGTGATAT
1 TTTCGACATGTCATAT
1624563 ACTCACATTC
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
29 19 0.28
30 42 0.62
31 7 0.10
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.37
Consensus pattern (30 bp):
TTTCGACATGTCATATGCCACATCATCACT
Found at i:1624579 original size:61 final size:60
Alignment explanation
Indices: 1624456--1624579 Score: 144
Period size: 59 Copynumber: 2.0 Consensus size: 60
1624446 ATGTCACCAC
* * *
1624456 TTTCGACATATGTCATATGTCACATCATCACTTTCGACATATCATATGCCACATCATCATT
1 TTTCGACA-ATGTCATATGCCACATCATCACTTTCGACATATCATATACCACATCACCATT
* * *
1624517 TTTCGAC-ATGTCATATGCCACATCATTACTTTTCGACATGTGATATACTCACATTC-CCATT
1 TTTCGACAATGTCATATGCCACATCATCAC-TTTCGACATATCATATAC-CACA-TCACCATT
1624578 TT
1 TT
1624580 CGATACATGA
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
59 20 0.37
60 15 0.28
61 17 0.31
62 2 0.04
ACGTcount: A:0.27, C:0.26, G:0.09, T:0.38
Consensus pattern (60 bp):
TTTCGACAATGTCATATGCCACATCATCACTTTCGACATATCATATACCACATCACCATT
Found at i:1626528 original size:34 final size:34
Alignment explanation
Indices: 1626469--1626535 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 34
1626459 ATTTAGAGAG
*
1626469 TTGTTTTCTCCTTTTTATCAAGAGAGAA-TTGTCA
1 TTGTTTTCTCCTTTTGATC-AGAGAGAAGTTGTCA
1626503 TTGTTTTCTCCTTGTTAGATC-GAGAGAAGTTGT
1 TTGTTTTCTCCTT-TT-GATCAGAGAGAAGTTGT
1626536 AATTCCTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 20 0.69
35 6 0.21
36 3 0.10
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.46
Consensus pattern (34 bp):
TTGTTTTCTCCTTTTGATCAGAGAGAAGTTGTCA
Found at i:1628675 original size:103 final size:100
Alignment explanation
Indices: 1628474--1628685 Score: 352
Period size: 103 Copynumber: 2.1 Consensus size: 100
1628464 GTCGAGGGTC
*
1628474 TATGTGGTCCTTTGGGACATATTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTG
1 TATGTGGTCCTTCGGGACATATTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTG
* *
1628539 ATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 ATCCCTAGCATATGTATATGATTCTTAAGGAATGA
*
1628574 TATGTGGTCCTTCGGGAAATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGG--ACATAT-TATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
1628639 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
63 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
1628677 TATGTGGTC
1 TATGTGGTC
1628686 TTTATGGACA
Statistics
Matches: 104, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
100 15 0.14
102 5 0.05
103 84 0.81
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (100 bp):
TATGTGGTCCTTCGGGACATATTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTG
ATCCCTAGCATATGTATATGATTCTTAAGGAATGA
Found at i:1628744 original size:23 final size:23
Alignment explanation
Indices: 1628718--1628767 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
1628708 ACTACGATGA
1628718 AATTCTACGCGGCACTCCGGTGC
1 AATTCTACGCGGCACTCCGGTGC
* *
1628741 AATTCTACGTGGCACTTCGGTGC
1 AATTCTACGCGGCACTCCGGTGC
1628764 AATT
1 AATT
1628768 ATATGAGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (23 bp):
AATTCTACGCGGCACTCCGGTGC
Found at i:1633373 original size:21 final size:21
Alignment explanation
Indices: 1633347--1633398 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
1633337 GGGCAGAGTA
1633347 CATCGATGCACATTCATAGTG
1 CATCGATGCACATTCATAGTG
1633368 CATCGATGCACATTCATAGTG
1 CATCGATGCACATTCATAGTG
1633389 CATCGATGCA
1 CATCGATGCA
1633399 TCAAGGTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (21 bp):
CATCGATGCACATTCATAGTG
Found at i:1634354 original size:21 final size:21
Alignment explanation
Indices: 1634328--1634374 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
1634318 GTCGATGGTC
1634328 TATGTGGTCCTTCAGGACATA
1 TATGTGGTCCTTCAGGACATA
1634349 TATGTGGTCCTTCAGGACATA
1 TATGTGGTCCTTCAGGACATA
1634370 TATGT
1 TATGT
1634375 ATTCTTTAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (21 bp):
TATGTGGTCCTTCAGGACATA
Found at i:1634533 original size:103 final size:103
Alignment explanation
Indices: 1634348--1634563 Score: 378
Period size: 103 Copynumber: 2.1 Consensus size: 103
1634338 TTCAGGACAT
1634348 ATATGTGGTCCTTCAGGACATATATGTATTCTTTAGAACATGTGTGAAGTCTAGTGAGACACATA
1 ATATGTGGTCCTTCAGGACATATATGTATTCTTTAGAACATGTGTGAAGTCTAGTGAGACACATA
* *
1634413 CTTGATCCTTGGCATATGTATATGATTCTTAAGGAATG
66 CTTGATCCCTAGCATATGTATATGATTCTTAAGGAATG
* * *
1634451 ATATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATA
1 ATATGTGGTCCTTCAGGACATATATGTATTCTTTAGAACATGTGTGAAGTCTAGTGAGACACATA
*
1634516 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATG
66 CTTGATCCCTAGCATATGTATATGATTCTTAAGGAATG
1634554 ATATGTGGTC
1 ATATGTGGTC
1634564 TTTATGGACA
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 107 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (103 bp):
ATATGTGGTCCTTCAGGACATATATGTATTCTTTAGAACATGTGTGAAGTCTAGTGAGACACATA
CTTGATCCCTAGCATATGTATATGATTCTTAAGGAATG
Found at i:1634616 original size:23 final size:23
Alignment explanation
Indices: 1634583--1634645 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
1634573 ATTATTATAT
* *
1634583 GGCACTACGGTGAAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
*
1634606 GGCACTTCGGTGCAATTCTACGT
1 GGCACTTCGGTGCAATTCTACGC
1634629 GGCACTTCGGTGCAATT
1 GGCACTTCGGTGCAATT
1634646 TTATGAGCTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Found at i:1640706 original size:66 final size:66
Alignment explanation
Indices: 1640624--1640759 Score: 263
Period size: 66 Copynumber: 2.1 Consensus size: 66
1640614 TGATCCTCCC
1640624 AACCCAACTACAATCATTTTCCCATAACCAAATTAATCAACCACTTCCAAGCTTCATCTCATACA
1 AACCCAACTACAATCATTTTCCCATAACCAAATTAATCAACCACTTCCAAGCTTCATCTCATACA
1640689 A
66 A
*
1640690 AACCCAACTACAATCATTTTCCCATAACCAAATTAATCCACCACTTCCAAGCTTCATCTCATACA
1 AACCCAACTACAATCATTTTCCCATAACCAAATTAATCAACCACTTCCAAGCTTCATCTCATACA
1640755 A
66 A
1640756 AACC
1 AACC
1640760 TGACCAAAAA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.39, C:0.35, G:0.01, T:0.25
Consensus pattern (66 bp):
AACCCAACTACAATCATTTTCCCATAACCAAATTAATCAACCACTTCCAAGCTTCATCTCATACA
A
Found at i:1644274 original size:20 final size:20
Alignment explanation
Indices: 1644251--1644303 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
1644241 CACGGAATGT
*
1644251 AAGATTACCAGTTGGAATAA
1 AAGATTACCAGTGGGAATAA
1644271 AAGATTACCAGTGGGAATAA
1 AAGATTACCAGTGGGAATAA
1644291 AAGATTACCAGTG
1 AAGATTACCAGTG
1644304 AATAGAATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.23
Consensus pattern (20 bp):
AAGATTACCAGTGGGAATAA
Found at i:1644475 original size:15 final size:15
Alignment explanation
Indices: 1644457--1644487 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1644447 AAATTCTAAA
1644457 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
1644472 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
1644487 T
1 T
1644488 CTATTTGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:1644615 original size:35 final size:31
Alignment explanation
Indices: 1644552--1644615 Score: 74
Period size: 32 Copynumber: 1.9 Consensus size: 31
1644542 ATTTTAATTA
**
1644552 ATATTAAATTTTACATAATTTATGTAAAAAT
1 ATATTAAATTTTACATAATTTAACTAAAAAT
1644583 ATATTAAAATTTTACATCAACATTTAACTAAAA
1 ATATT-AAATTTTACAT--A-ATTTAACTAAAA
1644616 TATTCATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 5 0.19
32 11 0.41
34 1 0.04
35 10 0.37
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.41
Consensus pattern (31 bp):
ATATTAAATTTTACATAATTTAACTAAAAAT
Found at i:1647653 original size:40 final size:40
Alignment explanation
Indices: 1647598--1647679 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
1647588 ACTGTAGTGC
1647598 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1647638 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1647678 TA
1 TA
1647680 TAAACCTACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:1658985 original size:28 final size:28
Alignment explanation
Indices: 1658949--1659002 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 28
1658939 TTTTTTTCAT
* *
1658949 TATTAT-AAAGTATAGAAAATATTAAAAA
1 TATTATAAAAATATAAAAAAT-TTAAAAA
*
1658977 TATTTTAAAAATATAAAAAATTTAAA
1 TATTATAAAAATATAAAAAATTTAAA
1659003 CTCATTTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 10 0.45
29 12 0.55
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (28 bp):
TATTATAAAAATATAAAAAATTTAAAAA
Found at i:1674906 original size:12 final size:13
Alignment explanation
Indices: 1674884--1674912 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
1674874 CTAAGTTTGG
1674884 TAAACCCTAAACC
1 TAAACCCTAAACC
1674897 TAAA-CCTAAACC
1 TAAACCCTAAACC
1674909 TAAA
1 TAAA
1674913 GTTCAAGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.17
Consensus pattern (13 bp):
TAAACCCTAAACC
Found at i:1677902 original size:21 final size:21
Alignment explanation
Indices: 1677871--1677928 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
1677861 ATTCTGACTA
*
1677871 TCGCATTGCGATTTTCCAAAT
1 TCGCGTTGCGATTTTCCAAAT
* **
1677892 TTGCGTTGCGATTTTTTAAAT
1 TCGCGTTGCGATTTTCCAAAT
1677913 TCGCGTTGCGATTTTC
1 TCGCGTTGCGATTTTC
1677929 TGACTATCGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.45
Consensus pattern (21 bp):
TCGCGTTGCGATTTTCCAAAT
Found at i:1677977 original size:20 final size:20
Alignment explanation
Indices: 1677929--1678000 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
1677919 TGCGATTTTC
* *
1677929 TGACTATCGCAATGTGAATA
1 TGACTATCGCAATGCGATTA
*
1677949 TGTA-AATCGCAATGCGATTA
1 TG-ACTATCGCAATGCGATTA
* *
1677969 TGACTATCGCAACGCGATTC
1 TGACTATCGCAATGCGATTA
*
1677989 TGACTGTCGCAA
1 TGACTATCGCAA
1678001 CGCTGAATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 1 0.02
20 41 0.95
21 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (20 bp):
TGACTATCGCAATGCGATTA
Found at i:1678854 original size:24 final size:24
Alignment explanation
Indices: 1678822--1678875 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
1678812 GTATTCAAAA
1678822 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
1678846 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
1678870 TTTGAT
1 TTTGAT
1678876 GTTGTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:1679094 original size:14 final size:14
Alignment explanation
Indices: 1679065--1679101 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
1679055 AGAAAAAGAA
1679065 GAAGAAGAAATCCCC
1 GAAGAA-AAATCCCC
*
1679080 GAAGAAAAGTCCCC
1 GAAGAAAAATCCCC
1679094 GAAGAAAA
1 GAAGAAAA
1679102 TGCCACGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.51, C:0.22, G:0.22, T:0.05
Consensus pattern (14 bp):
GAAGAAAAATCCCC
Found at i:1680159 original size:140 final size:140
Alignment explanation
Indices: 1679907--1680176 Score: 486
Period size: 140 Copynumber: 1.9 Consensus size: 140
1679897 AAACGTTGTA
1679907 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
* *
1679972 TGATCTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACACGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACACAAATTTGACTAT
1680037 TATGTGTATT
131 TATGTGTATT
*
1680047 TTATGTGTAAACTTTTAACATTTTTAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
* * *
1680112 TGATATGTTTAGTTGTTATCACTTATTTCACATTCATTTGAATATCGCAACGCAAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACACAAATTTGACTAT
1680177 CGCAACGCAA
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
140 124 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACACAAATTTGACTAT
TATGTGTATT
Found at i:1680172 original size:20 final size:20
Alignment explanation
Indices: 1680147--1680480 Score: 285
Period size: 20 Copynumber: 17.6 Consensus size: 20
1680137 TTTCACATTC
* *
1680147 ATTTGAATATCGCAACGCAA
1 ATTTGACTATCGCAACGCGA
*
1680167 ATTTGACTATCGCAACGCAA
1 ATTTGACTATCGCAACGCGA
* *
1680187 ATTTGATTATCGCAATGCGA
1 ATTTGACTATCGCAACGCGA
*
1680207 ATTTGACTATCGCAACACGA
1 ATTTGACTATCGCAACGCGA
*
1680227 ATATGACTATCGCAACGC-A
1 ATTTGACTATCGCAACGCGA
* *
1680246 A----A-AATCGTAACGCGA
1 ATTTGACTATCGCAACGCGA
*
1680261 ATTTGTCTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
1680281 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
1680301 ATTTGATTATCGCAACGAC-T
1 ATTTGACTATCGCAACG-CGA
*
1680321 ATTTGACTATCGCAACGAGA
1 ATTTGACTATCGCAACGCGA
*
1680341 A----A--ATCGCAACGCAA
1 ATTTGACTATCGCAACGCGA
*
1680355 ATTTAACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
1680375 ATTTGAGTATCGCAACGCAA
1 ATTTGACTATCGCAACGCGA
* * * *
1680395 ATTTGATTATTGCAACGGGT
1 ATTTGACTATCGCAACGCGA
*
1680415 ATTTGACTATCGCAACGAGA
1 ATTTGACTATCGCAACGCGA
* *
1680435 A----A--ATCGCAAAGCGT
1 ATTTGACTATCGCAACGCGA
*
1680449 ATTAGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
1680469 A-TTGACTTTCGC
1 ATTTGACTATCGC
1680481 GTTGCAATTT
Statistics
Matches: 252, Mismatches: 42, Indels: 41
0.75 0.13 0.12
Matches are distributed among these distances:
14 30 0.12
15 3 0.01
16 2 0.01
18 2 0.01
19 11 0.04
20 203 0.81
21 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:1680272 original size:74 final size:74
Alignment explanation
Indices: 1680175--1680317 Score: 216
Period size: 74 Copynumber: 1.9 Consensus size: 74
1680165 AAATTTGACT
*
1680175 ATCGCAACGCAAATTTGATTATCGCAATGCGAATTTGACTATCGCAACACGAATATGACTATCGC
1 ATCGCAACGCAAATTTGATTATCGCAACGCGAATTTGACTATCGCAACACGAATATGACTATCGC
1680240 AACGCAAAA
66 AACGCAAAA
* * * * *
1680249 ATCGTAACGCGAATTTG-TCTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCG
1 ATCGCAACGCAAATTTGAT-TATCGCAACGCGAATTTGACTATCGCAACACGAATATGACTATCG
1680313 CAACG
65 CAACG
1680318 ACTATTTGAC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
73 1 0.02
74 61 0.98
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (74 bp):
ATCGCAACGCAAATTTGATTATCGCAACGCGAATTTGACTATCGCAACACGAATATGACTATCGC
AACGCAAAA
Found at i:1680328 original size:94 final size:94
Alignment explanation
Indices: 1680155--1680480 Score: 433
Period size: 94 Copynumber: 3.5 Consensus size: 94
1680145 TCATTTGAAT
* * * *
1680155 ATCGCAACGCAAATTTGACTATCGCAACGCAAATTTGATTATCGCAATGCGAATTTGACTATCGC
1 ATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGC
* *
1680220 AAC-ACGAATATGACTATCGCAACGCA-AAA
66 AACGAC-TATTTGACTATCGCAACG-AGAAA
* * *
1680249 ATCGTAACGCGAATTTGTCTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGC
1 ATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGC
1680314 AACGACTATTTGACTATCGCAACGAGAAA
66 AACGACTATTTGACTATCGCAACGAGAAA
* * * *
1680343 ATCGCAACGCAAATTTAACTATCGCAACGCGAATTTGAGTATCGCAACGCAAATTTGATTATTGC
1 ATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGC
**
1680408 AACGGGTATTTGACTATCGCAACGAGAAA
66 AACGACTATTTGACTATCGCAACGAGAAA
* ** * *
1680437 ATCGCAAAGCGTATTAGACTATCGCAACGCGAA-TTGACTTTCGC
1 ATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGACTATCGC
1680481 GTTGCAATTT
Statistics
Matches: 205, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
93 10 0.05
94 193 0.94
95 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (94 bp):
ATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGC
AACGACTATTTGACTATCGCAACGAGAAA
Found at i:1680347 original size:54 final size:54
Alignment explanation
Indices: 1680175--1680391 Score: 154
Period size: 54 Copynumber: 3.9 Consensus size: 54
1680165 AAATTTGACT
* * * *
1680175 ATCGCAACGCAAATTTGATTATCGCAATGCGAATTTGACTATCGCAAC-ACGAAT
1 ATCGCAACGCAAATTTAACTATCGCAACGCGAATTTGACTATCGCAACGA-GAAA
* *** ** * * *
1680229 AT-GACTATCGC-AACGCAAAAATCGTAACGCGAATTTGTCTATCGCAACGCGAATTTGA
1 ATCG-C-AACGCAAATTTAACTATCGCAACGCGAATTTGACTATCGCAACGAGAA----A
* * * *
1680287 CTATCGCAACGCGAATTTGATTATCGCAACGAC-TATTTGACTATCGCAACGAGAAA
1 --ATCGCAACGCAAATTTAACTATCGCAACG-CGAATTTGACTATCGCAACGAGAAA
*
1680343 ATCGCAACGCAAATTTAACTATCGCAACGCGAATTTGAGTATCGCAACG
1 ATCGCAACGCAAATTTAACTATCGCAACGCGAATTTGACTATCGCAACG
1680392 CAAATTTGAT
Statistics
Matches: 122, Mismatches: 28, Indels: 26
0.69 0.16 0.15
Matches are distributed among these distances:
53 2 0.02
54 76 0.62
55 4 0.03
56 1 0.01
59 4 0.03
60 33 0.27
61 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (54 bp):
ATCGCAACGCAAATTTAACTATCGCAACGCGAATTTGACTATCGCAACGAGAAA
Found at i:1680372 original size:114 final size:112
Alignment explanation
Indices: 1680147--1680432 Score: 326
Period size: 114 Copynumber: 2.5 Consensus size: 112
1680137 TTTCACATTC
* *
1680147 ATTTGAATATCGCAACGCAAATTTGACTATCGCAACGCAAATTTGATTATCGCAATGCGAATTTG
1 ATTTGACTATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGATTATCGCAA--CGAATTTG
* * *
1680212 ACTATCGCAACACGAATATGACTATCGCAACGCAAAAATCGTAACGCGA
64 ACTATCGCAACACGAAAATGACTAACGCAACGCAAAAATCGCAACGCGA
* *
1680261 ATTTGTCTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACGACTATTTG
1 ATTTGACTATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGATTATCGCAACGA--ATTTG
*** **
1680326 ACTATCGCAACGA-GAAAATCG-C-AACGCAAATTTAACTATCGCAACGCGA
64 ACTATCGCAAC-ACGAAAAT-GACTAACGC-AACGCAAAAATCGCAACGCGA
* * * * * *
1680375 ATTTGAGTATCGCAACGCAAATTTGATTATTGCAACGGGTATTTGACTATCGCAACGA
1 ATTTGACTATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGATTATCGCAACGA
1680433 GAAAATCGCA
Statistics
Matches: 147, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
112 3 0.02
113 4 0.03
114 138 0.94
115 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (112 bp):
ATTTGACTATCGCAACGCAAATTTGACTATCGCAACGCGAATTTGATTATCGCAACGAATTTGAC
TATCGCAACACGAAAATGACTAACGCAACGCAAAAATCGCAACGCGA
Found at i:1680399 original size:74 final size:74
Alignment explanation
Indices: 1680269--1680411 Score: 216
Period size: 74 Copynumber: 1.9 Consensus size: 74
1680259 GAATTTGTCT
* * * *
1680269 ATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACGACTATTTGACTATCGC
1 ATCGCAACGCAAATTTAACTATCGCAACGCGAATTTGAGTATCGCAACGACAATTTGACTATCGC
1680334 AACGAGAAA
66 AACGAGAAA
* *
1680343 ATCGCAACGCAAATTTAACTATCGCAACGCGAATTTGAGTATCGCAACG-CAAATTTGATTATTG
1 ATCGCAACGCAAATTTAACTATCGCAACGCGAATTTGAGTATCGCAACGAC-AATTTGACTATCG
1680407 CAACG
65 CAACG
1680412 GGTATTTGAC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
73 1 0.02
74 61 0.98
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (74 bp):
ATCGCAACGCAAATTTAACTATCGCAACGCGAATTTGAGTATCGCAACGACAATTTGACTATCGC
AACGAGAAA
Found at i:1680525 original size:20 final size:20
Alignment explanation
Indices: 1680470--1680527 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
1680460 GCAACGCGAA
* *
1680470 TTGACTTTCGCGTTGCAATT
1 TTGACTTTAGCGTTGCGATT
* * *
1680490 TTGTCTTTTGCATTGCGATT
1 TTGACTTTAGCGTTGCGATT
*
1680510 TTGAGTTTAGCGTTGCGA
1 TTGACTTTAGCGTTGCGA
1680528 AAGTGTACCT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.14, C:0.16, G:0.24, T:0.47
Consensus pattern (20 bp):
TTGACTTTAGCGTTGCGATT
Found at i:1680668 original size:14 final size:14
Alignment explanation
Indices: 1680626--1680701 Score: 80
Period size: 14 Copynumber: 5.3 Consensus size: 14
1680616 AACAAATAAG
*
1680626 AATTATTTACACATC
1 AATT-TTTACAAATC
**
1680641 AATATTAAACAAATC
1 AAT-TTTTACAAATC
*
1680656 AACTTTTACAAATC
1 AATTTTTACAAATC
*
1680670 AATTTTTATAAATC
1 AATTTTTACAAATC
*
1680684 AATTTTTATAAATC
1 AATTTTTACAAATC
1680698 AATT
1 AATT
1680702 AAACAAGCAA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
14 39 0.75
15 12 0.23
16 1 0.02
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTTTACAAATC
Found at i:1682725 original size:18 final size:19
Alignment explanation
Indices: 1682702--1682768 Score: 91
Period size: 20 Copynumber: 3.5 Consensus size: 19
1682692 GAAACTTAAA
*
1682702 ATCGCAACAC-AAATGACT
1 ATCGCAACGCGAAATGACT
1682720 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCG-AAATGACT
*
1682740 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAA-ATGACT
1682760 ATCGCAACG
1 ATCGCAACG
1682769 AGAGAATCGC
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.20
19 2 0.05
20 33 0.75
ACGTcount: A:0.37, C:0.27, G:0.18, T:0.18
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:1682737 original size:20 final size:20
Alignment explanation
Indices: 1682712--1682768 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
1682702 ATCGCAACAC
1682712 AAATGACTATCGCAACGCGA
1 AAATGACTATCGCAACGCGA
1682732 AAATGACTATCGCAACGCGA
1 AAATGACTATCGCAACGCGA
**
1682752 ATTTGACTATCGCAACG
1 AAATGACTATCGCAACG
1682769 AGAGAATCGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (20 bp):
AAATGACTATCGCAACGCGA
Found at i:1682838 original size:20 final size:20
Alignment explanation
Indices: 1682813--1682918 Score: 113
Period size: 20 Copynumber: 5.3 Consensus size: 20
1682803 GATTCTTTCA
**
1682813 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCATTTTCGCG
* **
1682833 TTGCGATAGTTAAATTCGCG
1 TTGCGATAGTCATTTTCGCG
* * * *
1682853 TTGTGATAGTTATTTTTGTG
1 TTGCGATAGTCATTTTCGCG
*
1682873 TTGCGATAGTCATTTTCACG
1 TTGCGATAGTCATTTTCGCG
*
1682893 TTGCGATAGTCATTTTCGAG
1 TTGCGATAGTCATTTTCGCG
1682913 TTGCGA
1 TTGCGA
1682919 AAGTAAACTA
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 73 1.00
ACGTcount: A:0.21, C:0.14, G:0.25, T:0.41
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCG
Found at i:1683089 original size:18 final size:18
Alignment explanation
Indices: 1683066--1683133 Score: 127
Period size: 18 Copynumber: 3.8 Consensus size: 18
1683056 TTTACTAAGC
1683066 AATCTAAGTGAAATGGTT
1 AATCTAAGTGAAATGGTT
1683084 AATCTAAGTGAAATGGTT
1 AATCTAAGTGAAATGGTT
*
1683102 AATATAAGTGAAATGGTT
1 AATCTAAGTGAAATGGTT
1683120 AATCTAAGTGAAAT
1 AATCTAAGTGAAAT
1683134 TACGAGTAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.43, C:0.04, G:0.21, T:0.32
Consensus pattern (18 bp):
AATCTAAGTGAAATGGTT
Done.