Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000128.1 Hibiscus syriacus cultivar Beakdansim tig00000232_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62375
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Found at i:666 original size:18 final size:18
Alignment explanation
Indices: 632--670 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
622 TTTTATCTTA
632 TTTTTTTCATTGTATTTAT
1 TTTTTTTCATTGTATTT-T
*
651 TTTTTTTCTTTG-ATTTT
1 TTTTTTTCATTGTATTTT
668 TTT
1 TTT
671 ATTATTTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 4 0.21
19 11 0.58
ACGTcount: A:0.10, C:0.05, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTTTTTCATTGTATTTT
Found at i:4755 original size:106 final size:106
Alignment explanation
Indices: 4349--5733 Score: 2198
Period size: 105 Copynumber: 13.2 Consensus size: 106
4339 AACCATGAGC
* *
4349 ACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
* * *
4414 A-AAACAACTTCCCAATTTCAGAGCCAATTTCAAATTCCCA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
* * *
4454 GCGAATGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
*
4519 ATAACCAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
*
4560 ACGAAGGATA-TGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
*
4624 ATAACCAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
*
4665 ACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
* *
4730 ATAACCAACTTCTCAATTTCAGAGCCAATTTCAACTTCTCA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
* * * *
4771 ACGAAGGAT-CTAGACTCTAGACAACGCAAGTTCAACTTCACGACGAATGGACCGCTGGTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
* *
4835 ATAAA-TATTTCTCAATTTCAGAGCCAATTTCAACTTCACA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
4875 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
* *
4940 ATAAA-TATTTCTCAATTTCAGAGCCAATTTCAACTTCACA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
4980 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
*
5045 ATAAAC-ATTTCTCAATTTCAGAGCCAATTTCAACTTCACA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
*
5085 ACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
5150 ATAAAC-A-TTCTCAATTTCAGAGCCAATTTCAACTTCACA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
*
5189 ACGAAGG--ATTGGATTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
* * * * *
5252 ATCAA-TATTTCCCAATTTCAGAGCCAATTTCGACTTCACA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
* * *
5292 GCGAAGGATATTGGACTCCTGACAACGCAGGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
* * *
5357 ATAAACAACTTCCCAATTTCAGAGCCAATTTCAAATTCCCA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
* * * *
5398 GCGAATGATATTGGACTCAAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
* *
5463 ACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
5504 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
*
5569 ATAACCAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
* * *
5610 GCGAAGGATATTGGACTCCAGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCG
1 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
* * * * * * *
5675 ACAAATAATTTCCCAGTTCCAGAGCCAATTTCAACTTCACG
66 ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
* *
5716 GCGGAGGATATTGGACTC
1 ACGAAGGATATTGGACTC
5734 GGAATAATGC
Statistics
Matches: 1201, Mismatches: 70, Indels: 17
0.93 0.05 0.01
Matches are distributed among these distances:
102 59 0.05
103 36 0.03
104 80 0.07
105 541 0.45
106 485 0.40
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.24
Consensus pattern (106 bp):
ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
ATAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACA
Found at i:7730 original size:20 final size:19
Alignment explanation
Indices: 7707--7754 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
7697 TTTTATCTTA
7707 TTTTATTTCATTGTATTTAT
1 TTTTATTTCATTG-ATTTAT
* * *
7727 TTTTTTTTCTTTGATTTTT
1 TTTTATTTCATTGATTTAT
7746 TTATTATTT
1 TT-TTATTT
7755 AACATTTTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (19 bp):
TTTTATTTCATTGATTTAT
Found at i:11070 original size:2 final size:2
Alignment explanation
Indices: 11063--11102 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
11053 TGAATAAATA
11063 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11103 GATTAAGTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12491 original size:3 final size:3
Alignment explanation
Indices: 12485--12536 Score: 81
Period size: 3 Copynumber: 17.7 Consensus size: 3
12475 TAATATTTAT
12485 TAA TAA TAA -AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
12532 TAA TA
1 TAA TA
12537 TTCAAATGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.09
3 40 0.87
4 2 0.04
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:13126 original size:111 final size:113
Alignment explanation
Indices: 12895--13311 Score: 658
Period size: 113 Copynumber: 3.7 Consensus size: 113
12885 TCGACCAAGC
* *
12895 TCTTCTTATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
* *
12960 AAAAGTTGATCCATCGAGTGATGAATTCAAACAAAAAGTTGAACAAAT
66 AAAAGTTGATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAAT
* * *
13008 TCTTCTCATTATGAATTTCTTCTTTCTTCTTCAGACGAGTTCTTCTCATTATGAAC-TT-TCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
* * *
13071 TAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAAT
66 AAAAGTTGATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAAT
13119 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
* * * ** **
13184 AAAAGCTGATCCATCAAGTGATGGATTTAAGTAAAAGGTTGAACAAGC
66 AAAAGTTGATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAAT
13232 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
*
13297 AAAAGCTGATCCATC
66 AAAAGTTGATCCATC
13312 GTGATGGATT
Statistics
Matches: 279, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
111 101 0.36
112 4 0.01
113 174 0.62
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (113 bp):
TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
AAAAGTTGATCCATCAAGTGATGAATTCAAACAAAAGGTTGAACAAAT
Found at i:14493 original size:19 final size:17
Alignment explanation
Indices: 14469--14517 Score: 64
Period size: 16 Copynumber: 2.8 Consensus size: 17
14459 AAAATAAAAG
14469 AATAAATTGAATTTTCGAA
1 AATAAATTGAATTTTC--A
*
14488 AATAAATTGAA-TCTCA
1 AATAAATTGAATTTTCA
14504 AATAAATTGAATTT
1 AATAAATTGAATTT
14518 AGAGAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 12 0.44
17 1 0.04
18 3 0.11
19 11 0.41
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.37
Consensus pattern (17 bp):
AATAAATTGAATTTTCA
Found at i:18421 original size:9 final size:9
Alignment explanation
Indices: 18398--18428 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
18388 GAAAAATAAT
18398 GAATGTAAA
1 GAATGTAAA
18407 -AATGTAAA
1 GAATGTAAA
18415 GAATGTAAA
1 GAATGTAAA
18424 GAATG
1 GAATG
18429 ATTGCCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.55, C:0.00, G:0.23, T:0.23
Consensus pattern (9 bp):
GAATGTAAA
Found at i:27716 original size:3 final size:3
Alignment explanation
Indices: 27710--27780 Score: 83
Period size: 3 Copynumber: 23.7 Consensus size: 3
27700 TAATATTTAT
* * *
27710 TAA TAA T-A TAA TAA TAA TTA TAA TTA TAA TTA TAA TATA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
27755 TAA TAA TAA TAA TAA T-A TAAA TAA TA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TA
27781 TTCAAATGGA
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
2 4 0.07
3 49 0.84
4 5 0.09
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:27777 original size:12 final size:11
Alignment explanation
Indices: 27697--27780 Score: 86
Period size: 12 Copynumber: 7.7 Consensus size: 11
27687 ATTAGGCTTG
*
27697 TAATAAT-ATT
1 TAATAATAATA
*
27707 TATTAATAATA
1 TAATAATAATA
27718 TAATAATAATTA
1 TAATAATAA-TA
*
27730 TAATTATAAT-
1 TAATAATAATA
27740 T-ATAAT-ATA
1 TAATAATAATA
27749 TAATAATAATAA
1 TAATAATAAT-A
27761 TAATAATAATA
1 TAATAATAATA
27772 TAAATAATA
1 T-AATAATA
27781 TTCAAATGGA
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
8 2 0.03
9 5 0.08
10 12 0.19
11 15 0.24
12 28 0.45
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
TAATAATAATA
Found at i:29593 original size:29 final size:31
Alignment explanation
Indices: 29553--29626 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 31
29543 ATTGTATTGT
* *
29553 TTATAGCACTGAACTTTTAATTTTG-TT-AA
1 TTATAACACTGAACTTTGAATTTTGTTTCAA
*
29582 TTATAACACTGAACTTTGATTTTTGTTTCAA
1 TTATAACACTGAACTTTGAATTTTGTTTCAA
* *
29613 TTATACCATTGAAC
1 TTATAACACTGAAC
29627 CGTTAAATTG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 22 0.58
30 2 0.05
31 14 0.37
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (31 bp):
TTATAACACTGAACTTTGAATTTTGTTTCAA
Found at i:29789 original size:31 final size:29
Alignment explanation
Indices: 29749--29818 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
29739 TGAACAACCC
*
29749 AGTGATATAATTGAAACGAAAATCAAAGTTT
1 AGTGATATAATTGAAA--AAAATAAAAGTTT
* * *
29780 AGTGCTATAATTGGAAAAATTAAAAGTTT
1 AGTGATATAATTGAAAAAAATAAAAGTTT
29809 AGTGATATAA
1 AGTGATATAA
29819 ACGATACAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 20 0.59
31 14 0.41
ACGTcount: A:0.47, C:0.04, G:0.17, T:0.31
Consensus pattern (29 bp):
AGTGATATAATTGAAAAAAATAAAAGTTT
Found at i:30384 original size:11 final size:11
Alignment explanation
Indices: 30368--30393 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30358 TACAAGGATT
30368 AAATAAAAATA
1 AAATAAAAATA
30379 AAATAAAAATA
1 AAATAAAAATA
30390 AAAT
1 AAAT
30394 GATTGAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:33266 original size:28 final size:29
Alignment explanation
Indices: 33228--33286 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 29
33218 CATTGAATTC
33228 ATCAATGTTATATA-AATATTTTT-TTATT
1 ATCAATGTTATATAGAAT-TTTTTGTTATT
*
33256 ATCAATTTTATATATGAATTTTTTGTTATT
1 ATCAATGTTATATA-GAATTTTTTGTTATT
33286 A
1 A
33287 AGGAAATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 13 0.48
29 5 0.19
30 9 0.33
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (29 bp):
ATCAATGTTATATAGAATTTTTTGTTATT
Found at i:33686 original size:34 final size:34
Alignment explanation
Indices: 33648--33723 Score: 109
Period size: 34 Copynumber: 2.3 Consensus size: 34
33638 TTATTCCCGG
* * * *
33648 AAAATTGTTGTCGGTGACCACTGTTTATCATCGA
1 AAAATTATTGTCGATGACCACTATTTATCACCGA
33682 AAAATTATTGTCGATGACCACTATTTATCACCG-
1 AAAATTATTGTCGATGACCACTATTTATCACCGA
33715 AAAATTATT
1 AAAATTATT
33724 TTCTTGAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
33 9 0.24
34 29 0.76
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (34 bp):
AAAATTATTGTCGATGACCACTATTTATCACCGA
Found at i:34214 original size:185 final size:186
Alignment explanation
Indices: 33995--34385 Score: 615
Period size: 185 Copynumber: 2.1 Consensus size: 186
33985 TTTTCTAATT
* * * *
33995 TATATAA-AAATTAAATGTTTTTTAATTCAAAAAAAAAGTTTATAATTAATTTAAATAATATAGA
1 TATATAATATATTTAATATTTTTTAATTCAAAAAAAAAGTTTACAATTAATTTAAATAATATAGA
*
34059 ATTATAAAATAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTA
66 ATTATAAAATAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTA
* * * * *
34124 TTGGATCTTAAATTATTAATTGGGTTTTAAATTATTTGGGCTGAGCCCATATGTTA
131 TTAGATCTTAAATTATTAATTGAGTTGTAAATGATTTGGGCTGAGCCCATATGTAA
* *
34180 TATATAATATATTTAATATTTTTTAATT-AAAAAAACAGTTTACAATTAATTTAAATAATATATA
1 TATATAATATATTTAATATTTTTTAATTCAAAAAAAAAGTTTACAATTAATTTAAATAATATAGA
* *
34244 ATTATAAAATAAAAATTTTATATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTA
66 ATTATAAAATAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTA
* * *
34309 TTAGATCTTAAATTATTAATTGAGTTGTATATGGTTTGGGCTTAGCCCATATGTAA
131 TTAGATCTTAAATTATTAATTGAGTTGTAAATGATTTGGGCTGAGCCCATATGTAA
34365 TATATAATATATTTAATATTT
1 TATATAATATATTTAATATTT
34386 AAAAGTTAAT
Statistics
Matches: 188, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
185 171 0.91
186 17 0.09
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.45
Consensus pattern (186 bp):
TATATAATATATTTAATATTTTTTAATTCAAAAAAAAAGTTTACAATTAATTTAAATAATATAGA
ATTATAAAATAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTA
TTAGATCTTAAATTATTAATTGAGTTGTAAATGATTTGGGCTGAGCCCATATGTAA
Found at i:35793 original size:13 final size:13
Alignment explanation
Indices: 35775--35805 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
35765 CAATACAAAT
35775 ATATATATATTTA
1 ATATATATATTTA
35788 ATATATATATTTA
1 ATATATATATTTA
35801 ATATA
1 ATATA
35806 ATACAAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATATATATTTA
Found at i:35969 original size:126 final size:127
Alignment explanation
Indices: 35801--36029 Score: 356
Period size: 128 Copynumber: 1.8 Consensus size: 127
35791 TATATATTTA
* * * *
35801 ATATAATACAAAACATGCTTATCATATGTAACAAGTT-AAAAAATATATTGTACGTACATAATAT
1 ATATAATACAAAACATGCTTAACATATGTAACAAGTTAAAAAAAAATACTGTACATACATAATAT
*
35865 ATACATATTTAATGGAAGTGACTATTTATGAGGGATAAGTTTTCTATATATACATAATATAT
66 ATACATATTTAATGGAAGTGACTATTTATAAGGGATAAGTTTTCTATATATACATAATATAT
35927 ATATAATACAAAACATGCTTTAACA-ATGTAACGAA-TTGAAAAAAAAATACTGTACATACATAA
1 ATATAATACAAAACATGC-TTAACATATGTAAC-AAGTT-AAAAAAAAATACTGTACATACATAA
*
35990 TATATACATATTTAATGGGAGTGACTATTTATAAGGGATA
63 TATATACATATTTAATGGAAGTGACTATTTATAAGGGATA
36030 GTGTCGTAAC
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
126 27 0.29
127 7 0.08
128 59 0.63
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (127 bp):
ATATAATACAAAACATGCTTAACATATGTAACAAGTTAAAAAAAAATACTGTACATACATAATAT
ATACATATTTAATGGAAGTGACTATTTATAAGGGATAAGTTTTCTATATATACATAATATAT
Found at i:38060 original size:2 final size:2
Alignment explanation
Indices: 38048--38093 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
38038 AAACCTTCCT
38048 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
38089 TA TA T
1 TA TA T
38094 GCATAGTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:38812 original size:3 final size:3
Alignment explanation
Indices: 38778--38832 Score: 65
Period size: 3 Copynumber: 17.7 Consensus size: 3
38768 CCTGCAAATG
* * *
38778 TAA TAAA TAA TAT TAA TAA AAA TAA CAA TAA TAA TAA TAA TATA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
38825 TAA TAA TA
1 TAA TAA TA
38833 TTTTTTAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:42181 original size:33 final size:31
Alignment explanation
Indices: 42119--42185 Score: 73
Period size: 32 Copynumber: 2.1 Consensus size: 31
42109 GGCAGAAATC
*
42119 AAAATACTGAAATTTAAAGTGCGAGAAATTTA
1 AAAATACAGAAATTTAAAGTGCGAGAAA-TTA
* *
42151 AAAATAACAGAAATATTAAATTGC-ATAAATTA
1 AAAAT-ACAGAAAT-TTAAAGTGCGAGAAATTA
42183 AAA
1 AAA
42186 GTTAGGGGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
32 11 0.37
33 11 0.37
34 8 0.27
ACGTcount: A:0.57, C:0.06, G:0.10, T:0.27
Consensus pattern (31 bp):
AAAATACAGAAATTTAAAGTGCGAGAAATTA
Found at i:51506 original size:42 final size:43
Alignment explanation
Indices: 51439--51522 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 43
51429 TTAAGAATGT
* *
51439 TTTTAATATGTTAGTTTGATTTATTTGTGGATTGTTA-TTTTG
1 TTTTAATATGTTAGTTTGATGTATTTGTGAATTGTTACTTTTG
*
51481 TTTTAATATGTTAATTTTG-TGTATTTGTGAATTGTTACTTTT
1 TTTTAATATGTT-AGTTTGATGTATTTGTGAATTGTTACTTTT
51523 TGAGTTTAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 28 0.76
43 9 0.24
ACGTcount: A:0.20, C:0.01, G:0.17, T:0.62
Consensus pattern (43 bp):
TTTTAATATGTTAGTTTGATGTATTTGTGAATTGTTACTTTTG
Found at i:51953 original size:84 final size:84
Alignment explanation
Indices: 51836--52053 Score: 235
Period size: 84 Copynumber: 2.6 Consensus size: 84
51826 ACATTTTCTT
* * * *
51836 GTCATTGAAGCCACCGACATGAATCTCAGATGACACACAATTGTGTGTCATAAATCTATGACGCA
1 GTCATTGAAGCC-CCGTCATAAAT-TAAGATGACACACAATTGTGTGTCATAAATCTATGACACA
*
51901 CATTTATGACGTT-CATTGAGC
64 CATGTATGAC-TTACATTGAGC
* * * * *
51922 GTCATTGAAGCCCCGTCATAAATTAAGATGACACATATTTGTGTGTCATAAATTTATTATACACA
1 GTCATTGAAGCCCCGTCATAAATTAAGATGACACACAATTGTGTGTCATAAATCTATGACACACA
* *
51987 TGTATGACTTACATTGTGT
66 TGTATGACTTACATTGAGC
* *
52006 GTCATTGAAGCACACGTCATTAAA-AAAGATGACACAC-ATTCGTGTGTC
1 GTCATTGAAGC-CCCGTCA-TAAATTAAGATGACACACAATT-GTGTGTC
52054 GTGATTGTAT
Statistics
Matches: 112, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
83 2 0.02
84 61 0.54
85 33 0.29
86 16 0.14
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (84 bp):
GTCATTGAAGCCCCGTCATAAATTAAGATGACACACAATTGTGTGTCATAAATCTATGACACACA
TGTATGACTTACATTGAGC
Found at i:52086 original size:2 final size:2
Alignment explanation
Indices: 52079--52103 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
52069 TAATTATTGT
52079 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
52104 TGTAGATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:55540 original size:3 final size:3
Alignment explanation
Indices: 55525--55600 Score: 70
Period size: 3 Copynumber: 26.3 Consensus size: 3
55515 TATGTAACAT
* * * * *
55525 TAA TAA TAG TAA TAA TAA TAA TAA TGTA TTA TAA T-T TAA TAA TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
55570 TAA T-A TAA TAA TAA T-A TAA TAA TAA T-A TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
55601 TTTAATATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
2 7 0.12
3 51 0.85
4 2 0.03
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:55568 original size:8 final size:8
Alignment explanation
Indices: 55525--55593 Score: 59
Period size: 8 Copynumber: 8.0 Consensus size: 8
55515 TATGTAACAT
55525 TAATAATA
1 TAATAATA
55533 GTAATAATAA
1 -TAATAAT-A
55543 TAATAATGTA
1 TAATAA--TA
* *
55553 TTATAATT
1 TAATAATA
55561 TAATAATTA
1 TAATAA-TA
55570 TAAT-ATAA
1 TAATAAT-A
55578 TAATAATA
1 TAATAATA
55586 TAATAATA
1 TAATAATA
55594 ATATAATTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
7 1 0.02
8 21 0.42
9 20 0.40
10 7 0.14
11 1 0.02
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (8 bp):
TAATAATA
Found at i:55571 original size:14 final size:14
Alignment explanation
Indices: 55552--55607 Score: 55
Period size: 14 Copynumber: 4.0 Consensus size: 14
55542 ATAATAATGT
55552 ATTATAATTTAATA
1 ATTATAATTTAATA
*
55566 ATTATAATATAATA
1 ATTATAATTTAATA
55580 ATAATATAA--TAATA
1 AT--TATAATTTAATA
55594 A-TATAATTTTAATA
1 ATTATAA-TTTAATA
55608 TAATATTTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
11 5 0.14
14 26 0.72
16 5 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTATAATTTAATA
Found at i:55583 original size:11 final size:11
Alignment explanation
Indices: 55525--55612 Score: 76
Period size: 11 Copynumber: 8.2 Consensus size: 11
55515 TATGTAACAT
55525 TAATAATAGTAA
1 TAATAATA-TAA
55537 TAAT-A-ATAA
1 TAATAATATAA
* *
55546 TAAT-GTATTA
1 TAATAATATAA
*
55556 TAAT-TTAATAA
1 TAATAAT-ATAA
*
55567 TTATAATATAA
1 TAATAATATAA
55578 TAATAATATAA
1 TAATAATATAA
55589 TAATAATATAA
1 TAATAATATAA
**
55600 TTTTAATATAA
1 TAATAATATAA
55611 TA
1 TA
55613 TTTATAACTC
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
9 7 0.11
10 9 0.14
11 42 0.67
12 5 0.08
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (11 bp):
TAATAATATAA
Found at i:55962 original size:55 final size:55
Alignment explanation
Indices: 55792--56306 Score: 458
Period size: 55 Copynumber: 9.9 Consensus size: 55
55782 CAGCCGGTTC
* * * * * * * * *
55792 GCTCCCTCTTGCTTCTGAGAGTGTAAAACTCAAACAATCTTCATAAAATAG-GTAT
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCA-ACAATCGTGTCT
* ** * * *
55847 GTTCCCTATTTTTTCAGAGAGTATAGGACT----CAATCTTCAACAAACATGT-T
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCT
* * * * *
55897 CGCTCCCTATTCCTTCAGAGAGTATAGGACTTGAACAACCTTCAACAAACGTGTCC
1 -GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCT
* * *
55953 GCTCACTATTCCTTCAGAGAGTATATGACT----CAATCTTCAACAAACGTGTCT
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCT
* * *
56004 CCT-CCTATTCCTTCAAAGAGTATAAGACTCG---AA-----AACAATGGTGTCT
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCT
* * *
56050 GCTCCCTATTCCTTCAGAGAGTATAAGACTCAAACAATCTTGAACAATCGTGTAT
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCT
* * * *
56105 GCTCCTTATTCCTTCAGAGAGTATAAGACTCAAACAATTTTCAACAATCATGTCT
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCT
* *
56160 GCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATTTTCAACAATCGTGTCT
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCT
* *
56215 GCTCCCTATTTCTTCAGAGAGTTTAAGACTCGAACAA---T---C-A---TGTCT
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCT
* *
56260 GCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCCACAA
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAA
56307 ACGGGTTCGC
Statistics
Matches: 391, Mismatches: 44, Indels: 53
0.80 0.09 0.11
Matches are distributed among these distances:
45 41 0.10
46 13 0.03
47 26 0.07
48 2 0.01
49 1 0.00
50 29 0.07
51 62 0.16
52 2 0.01
55 215 0.55
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (55 bp):
GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCT
Found at i:56266 original size:45 final size:45
Alignment explanation
Indices: 56202--56298 Score: 176
Period size: 45 Copynumber: 2.2 Consensus size: 45
56192 AACAATTTTC
* *
56202 AACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTTTAAGACTCG
1 AACAATCATGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG
56247 AACAATCATGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG
1 AACAATCATGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG
56292 AACAATC
1 AACAATC
56299 TTCCACAAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (45 bp):
AACAATCATGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCG
Found at i:56278 original size:100 final size:100
Alignment explanation
Indices: 56147--56328 Score: 303
Period size: 100 Copynumber: 1.8 Consensus size: 100
56137 AACAATTTTC
* * *
56147 AACAATCATGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATTTTCAACAATCGTG
1 AACAATCATGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGGG
56212 -TCTGCTCCCTATTTCTTCAGAGAGTTTAAGACTCG
66 TTC-GCTCCCTATTTCTTCAGAGAGTTTAAGACTCG
*
56247 AACAATCATGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCCACAAACGGG
1 AACAATCATGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGGG
*
56312 TTCGCTCCCTCTTTCTT
66 TTCGCTCCCTATTTCTT
56329 TCATGAAGTA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 74 0.97
101 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (100 bp):
AACAATCATGTCTGCTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAAACGGG
TTCGCTCCCTATTTCTTCAGAGAGTTTAAGACTCG
Found at i:56369 original size:56 final size:56
Alignment explanation
Indices: 56260--56971 Score: 1114
Period size: 56 Copynumber: 12.8 Consensus size: 56
56250 AATCATGTCT
* * **
56260 GCTCCCTATTTC-TTCA-GAGAGTATA-AGACTCGAACAATCTTCCACAAACGGGTTC
1 GCTCCCTCTTTCTTTCAGGA-AGTATAGA-ACTCGAATAATCTTCTGCAAACGGGTTC
* * * *
56315 GCTCCCTCTTTCTTTCATGAAGTATAGAATTCGAATAATGTTCTGCAAATGGGTTC
1 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
56371 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
1 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
56427 GCTCCCTCTTTCTTTCAGGAA-TATAGAACTCGAATAATCTTCTGCAAACGGGTTC
1 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
*
56482 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTTGAATAATCTTCTGCAAACGGGTTC
1 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
* *
56538 GCTCCTTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTACAAACGGGTTC
1 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
* *
56594 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTTTGCAAACGGGTTT
1 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
*
56650 GCTCCCTCTTTCTTTC-GAGAAGTATAAAACTCGAATAATCTTCTGCAAACGGGTTC
1 GCTCCCTCTTTCTTTCAG-GAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
* * *
56706 GCTCCCTCTTTCTTTCAGAAAGTATAGAATTCGAATAATCTTCTGCAAATGGGTTC
1 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
* * *
56762 GCTCCCTCATTCTTTCATGAAGTATAAAACTCGAATAATCTTCTGCAAACGGGTTC
1 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
*
56818 GCCCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
1 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
*
56874 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTATGCAAACGGGTTC
1 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
* * * *
56930 GCTCCCTCTTTCTCT-AGGGAGTATGGAACTCGAA-CATCTTCT
1 GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCT
56972 CTTGCTTCAC
Statistics
Matches: 608, Mismatches: 43, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
54 6 0.01
55 84 0.14
56 514 0.85
57 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (56 bp):
GCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTC
Found at i:57033 original size:37 final size:37
Alignment explanation
Indices: 56973--57052 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
56963 ACATCTTCTC
56973 TTGCTTCACTACTTCTTTATGAAGGCTTATAG-ATGAT
1 TTGCTTCACTACTTCTTTATGAAGGCTTA-AGTATGAT
* *
57010 TTGCTTCACTAC-TCTTTCGTGAAGGCTTAAGTTTGAT
1 TTGCTTCACTACTTCTTT-ATGAAGGCTTAAGTATGAT
57047 TTGCTT
1 TTGCTT
57053 AATGTCGAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
36 7 0.18
37 32 0.82
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.45
Consensus pattern (37 bp):
TTGCTTCACTACTTCTTTATGAAGGCTTAAGTATGAT
Found at i:57422 original size:37 final size:37
Alignment explanation
Indices: 57366--57498 Score: 141
Period size: 37 Copynumber: 3.6 Consensus size: 37
57356 TTGCTCCAAC
* * * *
57366 ACTCTTCTGAGAAGG-CTTAAAATGGATTTACTTCCCT
1 ACTCTTCAGTGAAGGACTTAAGATGG-TTTACTTCACT
*
57403 ACTCTTCAGTGAA-TACTTAAGATGGTTTACTTCACT
1 ACTCTTCAGTGAAGGACTTAAGATGGTTTACTTCACT
**
57439 ACTCTTTGGTGAAGGA-TTAAGATGGTTTTGA-TTCACT
1 ACTCTTCAGTGAAGGACTTAAGATGG-TTT-ACTTCACT
57476 ACTCTTCAGTGAAGG-CTTAAGAT
1 ACTCTTCAGTGAAGGACTTAAGAT
57499 TGACTTTGCT
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
36 30 0.37
37 50 0.62
38 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (37 bp):
ACTCTTCAGTGAAGGACTTAAGATGGTTTACTTCACT
Found at i:59034 original size:125 final size:123
Alignment explanation
Indices: 58791--59140 Score: 447
Period size: 125 Copynumber: 2.8 Consensus size: 123
58781 CCGTAACGTC
* * *
58791 AACTTATACTGGTACGGCCTTCAAAATGCCACAACACCTCTAATTGTAAGGCTCATTC-TCAAGG
1 AACTTATACTGGTACGGCCTTCAAAATGCC-CATCACCTCAAATTGTAAGGCTCATTCTTC-ATG
* * * * *
58855 CCTTCTTGGTCTGTATCTTGTCATCTCAACATGATGTGGGTTTAGTCACGCCCCAATATT
64 CCTACTTGGTCTGAATCTTATCATCTCAACATGATGTGGGTTCAGTCACGCCCCAACATT
* * * *
58915 ACCTTATACTGATATGTGCCTTCAAAATGCCCTATCACCTCAAATTGTAAGGCTCGTTCTTCATG
1 AACTTATACTGGTACG-GCCTTCAAAATGCCC-ATCACCTCAAATTGTAAGGCTCATTCTTCATG
* *
58980 CCTCCTTGGTCTGAATCTTTTCATCTCAACATGATGTGGGTTCAG-C-CGTTCCCCAACATT
64 CCTACTTGGTCTGAATCTTATCATCTCAACATGATGTGGGTTCAGTCACG--CCCCAACATT
* *
59040 AACTTATA-TCGGTACGAGCCTTTAAAATGTCCCATCACTTCAAATTGTAAGGCTCATTCTTCAT
1 AACTTATACT-GGTACG-GCCTTCAAAATG-CCCATCACCTCAAATTGTAAGGCTCATTCTTCAT
59104 GCCTACTTGGTCTGAATCTTATCATCTCAACATGATG
63 GCCTACTTGGTCTGAATCTTATCATCTCAACATGATG
59141 GGCTCAATCG
Statistics
Matches: 198, Mismatches: 21, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
123 2 0.01
124 16 0.08
125 175 0.88
126 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (123 bp):
AACTTATACTGGTACGGCCTTCAAAATGCCCATCACCTCAAATTGTAAGGCTCATTCTTCATGCC
TACTTGGTCTGAATCTTATCATCTCAACATGATGTGGGTTCAGTCACGCCCCAACATT
Done.