genome.fa.s1284.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001284.1 Hibiscus syriacus cultivar Beakdansim tig00002518_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86703

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3797--3847	22	2.3	22	100	0	102	52	23	0	23	1.47
4233--4267	18	1.9	18	94	0	61	25	34	20	20	1.96
4896--4946	19	2.7	19	96	0	93	21	15	41	21	1.90
5935--6012	38	2.0	40	87	5	115	34	6	12	46	1.68
6656--6721	23	3.0	22	84	6	82	25	27	25	21	1.99
6683--6720	20	1.9	20	100	0	76	21	28	28	21	1.98
7376--7481	56	1.9	55	82	1	131	24	16	21	37	1.93
13459--13523	23	2.8	23	75	9	78	29	24	24	21	1.99
13746--13834	30	3.0	30	89	0	133	30	24	4	40	1.75
14197--14319	63	1.9	64	81	4	151	26	17	20	34	1.95
15864--15910	16	3.1	16	78	9	62	63	0	0	36	0.94
25619--25649	2	15.5	2	100	0	62	51	0	0	48	1.00
27397--27881	226	2.1	226	94	1	866	44	7	8	39	1.63
27917--27977	20	3.1	19	84	13	79	55	11	14	18	1.68
28119--28161	20	2.3	19	88	11	63	51	11	16	20	1.75
30373--30416	21	2.1	21	91	0	70	40	11	31	15	1.83
30449--30514	33	2.0	33	90	0	105	28	0	48	22	1.51
32303--32351	19	2.6	19	93	0	80	30	2	10	57	1.43
32470--34008	198	7.9	197	93	4	2543	35	14	18	31	1.91
35469--35584	6	19.3	6	82	0	97	37	8	33	19	1.83
35472--35588	24	4.9	24	87	0	126	36	8	33	21	1.84
35472--35575	12	8.4	12	86	6	136	36	9	33	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37090--37579	183	2.7	182	95	1	854	34	14	16	34	1.90
40047--40111	25	2.6	25	80	0	85	35	9	13	41	1.77
40393--40439	22	2.2	21	78	17	53	40	12	8	38	1.74
40457--40529	23	3.2	23	88	0	101	34	4	21	39	1.73
40533--40572	21	1.9	21	84	0	53	30	10	7	52	1.62
40957--40993	18	2.1	18	89	0	56	32	5	10	51	1.60
40949--40995	24	2.0	24	86	0	67	34	4	14	46	1.64
41252--41338	39	2.2	39	87	0	138	47	19	13	19	1.83
41757--41829	23	3.2	23	84	0	92	35	4	20	39	1.72
42185--42257	23	3.2	23	82	0	83	32	5	20	41	1.75
41554--43891	427	5.5	431	96	0	4272	41	7	12	39	1.71
42616--42688	23	3.2	23	86	0	92	34	4	20	41	1.72
43043--43115	23	3.2	23	84	0	92	32	4	21	41	1.72
43469--43541	23	3.2	23	84	0	92	34	4	21	39	1.73
45063--45096	16	2.1	17	88	5	52	32	23	2	41	1.69
49893--50049	82	1.9	84	85	4	219	36	13	3	46	1.61
51457--51535	21	3.8	21	73	9	72	48	8	12	30	1.72
52991--53031	18	2.3	18	84	12	50	34	14	17	34	1.90
54734--54822	21	4.2	21	77	0	88	37	14	14	33	1.87
55510--55565	17	3.1	17	87	10	76	39	8	26	25	1.85
56064--56110	23	2.0	23	84	8	60	42	14	8	34	1.77
57184--57239	19	2.8	20	89	5	87	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57774--57836	29	2.2	29	82	5	74	34	9	14	41	1.78
58456--58530	31	2.4	31	79	2	87	46	2	8	42	1.47
71304--71384	29	2.8	29	73	16	85	44	4	6	44	1.50
82627--82674	25	1.9	25	82	0	60	41	2	0	56	1.11
83065--83130	34	1.9	35	87	3	98	56	10	10	22	1.64
83319--83375	14	4.1	14	84	8	80	63	17	10	8	1.51
84085--84254	84	2.0	84	97	2	324	32	3	14	49	1.60
84357--84443	34	2.5	35	79	7	97	35	14	22	26	1.94
85489--85525	16	2.4	16	90	4	58	35	5	10	48	1.61

Tables:   1

The End!