genome.fa.s1285.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001285.1 Hibiscus syriacus cultivar Beakdansim tig00002519_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107047

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3554--3611	2	32.5	2	77	22	67	46	0	0	53	1.00
3554--3611	9	6.6	9	81	18	77	46	0	0	53	1.00
3551--3613	20	3.3	19	84	15	85	47	0	0	52	1.00
3557--3613	13	4.5	13	77	18	57	45	0	0	54	0.99
3551--3611	11	5.7	11	79	14	65	47	0	0	52	1.00
22080--22114	11	3.2	11	88	11	54	71	0	11	17	1.14
22233--22301	18	3.7	19	79	12	72	73	2	1	21	1.04
22233--22299	28	2.4	27	78	7	71	74	2	1	20	1.03
22235--22301	23	3.0	22	77	18	66	73	2	1	22	1.06
22248--22299	15	3.3	15	77	15	59	71	1	1	25	1.07
24619--24670	26	2.0	26	100	0	104	19	11	23	46	1.82
24675--25415	378	2.0	378	97	0	1392	22	19	25	33	1.97
26106--26159	21	2.6	20	88	8	81	5	14	0	79	0.90
36495--36557	5	13.0	5	75	12	51	73	1	1	23	1.01
36480--36547	28	2.4	27	81	13	75	76	4	1	17	1.03
36500--36559	23	2.6	22	80	15	59	71	1	1	25	1.04
36505--36539	18	1.9	18	94	0	61	77	2	0	20	0.90
36495--36557	20	3.2	20	82	8	76	73	1	1	23	1.01
36480--36559	18	4.3	18	72	17	56	73	3	1	21	1.06
36495--36564	10	7.1	10	77	8	63	71	1	2	24	1.08
36701--36733	2	16.5	2	100	0	66	51	0	0	48	1.00
42036--42099	35	1.9	34	84	15	89	39	3	14	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42091--42122	15	2.1	15	100	0	64	37	6	6	50	1.53
42036--42119	33	2.5	34	78	18	86	39	4	11	44	1.63
42091--42133	14	3.0	14	89	3	59	46	6	4	41	1.51
42225--42382	21	7.8	20	72	7	86	38	25	17	18	1.92
42349--42542	20	9.6	20	81	5	221	35	25	19	19	1.95
42349--42542	60	3.2	60	83	0	253	35	25	19	19	1.95
42925--42995	33	2.2	33	92	0	115	11	22	18	47	1.80
43075--43184	21	5.8	20	74	17	108	45	18	24	11	1.83
43068--43184	41	3.1	38	81	14	145	46	17	25	11	1.81
43135--43191	14	3.7	14	75	20	60	43	22	24	8	1.81
43127--43207	33	2.5	33	95	0	144	46	22	22	8	1.78
43203--43330	19	7.1	19	71	19	87	10	25	18	45	1.82
43225--43281	14	3.7	14	75	20	60	8	24	22	43	1.81
43208--43330	33	3.5	33	88	10	165	10	24	18	46	1.81
43266--43330	21	3.1	21	82	4	96	10	26	15	47	1.78
45023--45490	93	5.1	93	98	0	904	22	12	19	46	1.83
45023--45490	185	2.5	186	98	0	904	22	12	19	46	1.83
45538--45666	19	7.3	19	75	17	125	45	28	17	8	1.77
45574--45666	33	2.8	32	91	4	150	46	27	18	7	1.76
45538--45666	52	2.5	52	74	14	140	45	28	17	8	1.77
45662--45819	19	8.6	19	81	6	173	11	18	24	45	1.82
45667--45804	52	2.5	54	88	5	190	10	18	23	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47736--47771	14	2.6	14	95	0	63	33	0	22	44	1.53
47878--47975	19	5.4	19	84	13	143	45	17	22	14	1.84
47878--47994	53	2.2	53	98	1	227	44	17	23	13	1.85
47984--48185	19	11.7	19	73	21	194	14	21	18	45	1.85
47990--48199	33	6.2	33	76	15	223	13	21	18	45	1.84
47984--48154	52	3.3	52	97	0	315	14	22	17	45	1.85
50478--50502	12	2.1	12	100	0	50	0	28	0	72	0.86
50676--50722	24	2.0	24	87	8	69	38	21	14	25	1.92
51401--51630	20	11.5	20	85	1	237	19	18	24	36	1.94
51617--51699	21	4.0	21	71	6	69	25	14	24	36	1.93
51883--51917	17	2.1	17	94	0	61	42	5	5	45	1.51
53164--53223	4	14.0	4	80	13	50	26	1	0	71	0.95
53164--53223	9	6.4	9	81	14	68	26	1	0	71	0.95
54284--54323	15	2.6	16	84	4	55	55	0	0	45	0.99
55553--55605	20	2.7	20	80	8	63	32	5	11	50	1.61
62142--62201	21	2.8	22	82	5	86	23	31	26	18	1.97
66206--66245	16	2.6	16	84	4	55	62	5	7	25	1.42
66269--66338	31	2.3	30	80	5	77	41	2	22	32	1.69
66445--66725	127	2.2	129	84	6	367	46	14	15	22	1.83
68637--68768	58	2.3	57	78	8	135	37	15	15	31	1.89
70331--70406	33	2.3	33	90	0	125	22	17	14	46	1.84
87624--87654	13	2.4	13	94	0	53	38	35	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92209--92283	30	2.5	30	82	4	89	40	8	20	32	1.81
92657--92688	16	2.0	16	100	0	64	12	37	6	43	1.68
94567--94781	31	6.9	31	90	4	335	23	17	22	36	1.94
94851--94911	30	2.0	30	87	0	86	39	11	18	31	1.86
94860--94927	30	2.3	30	81	0	82	41	10	19	29	1.84
95054--95154	6	16.8	6	73	8	62	38	2	21	36	1.69
95055--95154	18	5.6	18	78	0	119	38	3	22	37	1.69
95053--95154	36	2.8	36	98	0	195	38	3	21	36	1.72
97523--97732	65	3.2	65	78	8	223	25	18	25	30	1.98
97633--97671	19	2.1	19	90	0	60	25	15	33	25	1.95
104176--104215	21	1.9	21	85	10	55	35	10	2	52	1.48
106217--106256	19	2.1	19	90	0	62	25	15	32	27	1.95
106151--106316	65	2.6	64	81	9	187	25	18	25	31	1.97

Tables:   1

The End!