genome.fa.s1286.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001286.1 Hibiscus syriacus cultivar Beakdansim tig00002520_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78628

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13588--13759	20	8.4	21	81	7	210	29	25	12	33	1.92
13588--13759	41	4.2	41	84	3	222	29	25	12	33	1.92
20783--20813	2	16.0	2	93	6	55	51	0	0	48	1.00
20808--20856	26	1.9	26	87	4	73	36	0	0	63	0.95
20831--20882	16	3.3	15	75	19	61	36	0	3	59	1.16
20810--20911	32	3.2	30	77	10	87	35	0	1	61	1.14
21656--21706	23	2.2	23	96	0	93	39	9	23	27	1.86
23520--23577	24	2.4	24	80	11	66	53	1	0	44	1.10
23543--23635	23	3.6	27	71	23	67	49	2	0	48	1.13
23713--23780	19	3.6	18	71	25	52	48	2	1	47	1.26
23775--23819	23	2.0	23	86	0	63	53	2	2	42	1.25
24133--24163	14	2.2	14	94	0	53	51	12	9	25	1.70
24175--24254	14	5.6	14	86	8	117	33	21	6	38	1.78
24173--24252	28	2.8	29	94	3	144	32	21	6	40	1.78
26613--26774	28	5.6	28	79	7	173	40	9	11	38	1.73
26630--26771	57	2.5	59	89	3	209	39	9	11	38	1.76
32842--32886	18	2.5	18	96	0	81	24	15	24	35	1.94
33839--33909	30	2.3	31	83	9	92	43	4	18	33	1.69
34752--34814	21	3.0	21	95	0	108	28	23	23	23	2.00
34814--34857	22	2.0	23	86	4	63	20	15	18	45	1.85
39079--39186	53	2.0	54	85	1	146	54	8	11	25	1.63
44230--44341	41	2.7	42	78	12	99	37	21	11	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44251--44349	41	2.4	41	84	1	117	33	20	13	33	1.91
44414--44516	41	2.5	41	82	1	125	32	24	16	27	1.96
44513--44543	15	2.1	15	100	0	62	6	35	0	58	1.24
44516--44548	15	2.3	15	89	5	50	9	36	0	54	1.32
47331--47392	21	3.0	21	87	0	79	24	6	16	53	1.66
47603--47701	44	2.2	44	85	3	128	37	23	15	24	1.93
60077--60324	131	1.9	131	91	1	410	40	8	13	37	1.76
61161--61185	2	12.5	2	100	0	50	48	0	0	52	1.00
66976--67029	21	2.6	21	96	0	99	38	9	29	22	1.85
69248--69349	34	3.0	34	100	0	204	26	8	29	35	1.87
69972--70049	16	4.9	16	67	6	59	44	24	15	15	1.85
69974--70118	32	4.5	32	73	6	114	43	25	14	16	1.86
70910--71019	32	3.4	32	72	7	89	43	26	9	20	1.82
71802--71954	64	2.4	64	91	0	234	19	25	26	28	1.99
72600--72630	12	2.6	12	100	0	62	19	0	12	67	1.22
75642--75701	22	2.6	23	84	10	77	41	5	6	46	1.52
75734--75811	33	2.4	30	78	17	84	43	1	8	46	1.43
75800--75833	8	4.5	8	85	14	54	41	0	8	50	1.34
75767--75833	22	3.2	22	81	12	79	41	0	10	47	1.38
75807--75834	14	2.0	14	100	0	56	42	0	7	50	1.30
75741--75871	55	2.3	59	81	10	150	43	1	9	45	1.46
75788--75928	25	5.8	25	64	22	61	44	2	10	42	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75843--75890	14	3.7	13	78	16	55	41	2	10	45	1.50
75788--75873	35	2.4	36	90	1	129	44	1	10	44	1.46
75800--75864	21	3.0	21	82	6	69	41	1	12	44	1.51
76042--76119	21	3.7	21	75	14	88	53	7	3	34	1.48
76047--76128	42	2.0	42	92	2	139	53	8	4	32	1.53
76522--76600	24	3.4	23	79	8	97	46	3	6	43	1.47
76440--76561	57	2.2	55	78	11	133	42	3	7	46	1.48
76522--76616	24	4.0	24	78	8	70	47	3	6	43	1.44

Tables:   1

The End!