genome.fa.s1287.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001287.1 Hibiscus syriacus cultivar Beakdansim tig00002521_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66730

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3564--3678	60	1.9	60	85	3	160	25	21	26	26	2.00
7307--7360	15	3.6	15	94	0	90	38	7	33	20	1.80
9052--9098	18	2.6	18	86	0	67	0	63	0	36	0.94
9050--9094	24	2.0	22	91	8	72	0	62	0	37	0.96
11423--12022	312	1.9	312	81	4	728	20	24	18	37	1.94
13973--14322	129	2.7	126	82	6	418	27	16	30	25	1.97
14314--14776	44	11.1	43	68	16	262	26	19	24	29	1.98
13891--14812	125	7.3	125	80	9	833	26	18	27	27	1.98
15074--15162	32	2.8	32	84	0	106	29	24	15	30	1.96
22293--22335	20	2.2	20	86	0	59	34	20	13	30	1.92
31210--31259	27	1.9	25	88	8	73	56	10	18	16	1.67
32919--33124	76	2.7	76	87	3	292	20	24	31	23	1.98
33729--33772	17	2.6	17	85	7	63	56	29	0	13	1.38
33724--33774	9	6.2	8	78	17	52	58	27	0	13	1.36
35734--35773	21	1.9	21	89	0	62	10	25	40	25	1.86
35732--35816	20	4.1	20	76	7	62	16	24	36	22	1.94
41576--41783	75	2.8	75	87	3	276	21	23	32	23	1.98
42980--43020	21	2.0	21	85	0	55	68	12	7	12	1.39
43950--43989	3	13.0	3	89	5	62	62	0	2	35	1.09
45976--46023	12	4.2	11	87	10	69	72	0	0	27	0.84
45976--46023	23	2.1	24	88	7	73	72	0	0	27	0.84
46147--46177	13	2.3	14	94	5	55	38	6	0	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46160--46345	37	5.4	33	82	8	178	42	8	3	45	1.53
46197--46369	34	4.9	36	83	9	191	43	10	4	41	1.57
48111--48148	15	2.7	15	88	8	53	7	10	2	78	1.04
48135--48228	47	2.0	48	82	2	118	20	22	12	44	1.85
58510--58557	23	2.0	24	88	4	71	62	2	2	33	1.18
58684--58877	38	5.4	38	73	15	146	46	9	2	41	1.48
59579--59641	14	4.9	13	76	18	53	77	3	0	19	0.90
59578--59637	24	2.5	24	85	15	81	76	3	0	20	0.92
59597--59641	7	6.0	7	85	14	63	80	0	0	20	0.72
61071--61275	85	2.4	87	82	7	242	23	18	24	33	1.97
61741--62401	106	6.5	106	86	8	893	23	18	24	33	1.97
61784--62386	200	3.0	198	85	8	805	23	18	24	33	1.96
61741--62401	306	2.2	306	91	0	1072	23	18	24	33	1.97

Tables:   1

The End!