Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001288.1 Hibiscus syriacus cultivar Beakdansim tig00002522_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65557
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Found at i:211 original size:20 final size:19
Alignment explanation
Indices: 180--218 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
170 TTATCATACC
*
180 AAATTTTCTCAAATTCTCT
1 AAATTTTCTCAAATACTCT
199 AAATTTCTCTCAAATACTCT
1 AAATTT-TCTCAAATACTCT
219 CTTTTTAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.44
Consensus pattern (19 bp):
AAATTTTCTCAAATACTCT
Found at i:482 original size:110 final size:107
Alignment explanation
Indices: 340--556 Score: 339
Period size: 110 Copynumber: 2.0 Consensus size: 107
330 TGGAAATCAT
*
340 ATATCTCTACACTTTGCTGATACGGTAACATTTTAAACGTTTTAATTTAATTTAAATTATTAGTA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTT-AACGTTTTAATTTAATTTAAATTATTA-T-
* * *
405 ATATTTAGTT-ATTTATTT-ATGCATGATTATTATATTAATAATTAA
63 A-A-TTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
450 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTATAAT
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTATAAT
515 TAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
557 TTTTTGTAAT
Statistics
Matches: 101, Mismatches: 4, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
105 6 0.06
106 8 0.08
107 26 0.26
108 1 0.01
109 27 0.27
110 33 0.33
ACGTcount: A:0.35, C:0.09, G:0.10, T:0.46
Consensus pattern (107 bp):
ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTATAAT
TAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:6144 original size:49 final size:51
Alignment explanation
Indices: 6022--6144 Score: 180
Period size: 49 Copynumber: 2.5 Consensus size: 51
6012 TTATACAAAA
*
6022 CGCGGTACCTGCCCCGCACTATATAAAATTATGTCAGGTGTAAAGGTATGT
1 CGCGGTACCTGCCCCGCACTATATAAAATTATGTCAGGAGTAAAGGTATGT
*
6073 CGCGGTACCTGCCCCGCGCTATATAAAATTAT-T-AGGAGTAAAGGTATAG-
1 CGCGGTACCTGCCCCGCACTATATAAAATTATGTCAGGAGTAAAGGTAT-GT
**
6122 CGCGGTACCTGATCCGCACTATA
1 CGCGGTACCTGCCCCGCACTATA
6145 CCCCTGCGTG
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
49 33 0.50
50 2 0.03
51 31 0.47
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (51 bp):
CGCGGTACCTGCCCCGCACTATATAAAATTATGTCAGGAGTAAAGGTATGT
Found at i:6235 original size:50 final size:51
Alignment explanation
Indices: 6156--6283 Score: 186
Period size: 51 Copynumber: 2.5 Consensus size: 51
6146 CCCTGCGTGG
* * * **
6156 CGTATAGCGCGCTGCAGGGGCCGCACTATA-CCCACGTGGCGCCATCTCAC
1 CGTATAGCGCGGTGCAGGGGGCGCGCTATACCCCACGTGGCGCCAAATCAC
*
6206 CGTATAGCGCGGTGCAGGGGGCGCGCTATACCCCACGTGGCGCCAAATCAT
1 CGTATAGCGCGGTGCAGGGGGCGCGCTATACCCCACGTGGCGCCAAATCAC
*
6257 CATATAGCGCGGTGCAGGGGGCGCGCT
1 CGTATAGCGCGGTGCAGGGGGCGCGCT
6284 TTACTGCTAA
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 27 0.39
51 43 0.61
ACGTcount: A:0.18, C:0.33, G:0.34, T:0.16
Consensus pattern (51 bp):
CGTATAGCGCGGTGCAGGGGGCGCGCTATACCCCACGTGGCGCCAAATCAC
Found at i:8180 original size:23 final size:23
Alignment explanation
Indices: 8153--8216 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
8143 ATATATTTTT
8153 ATATTAGTATGTTTATAACATAA
1 ATATTAGTATGTTTATAACATAA
* *
8176 ATATTA--ATGTACTATTGACATAA
1 ATATTAGTATGT-TTA-TAACATAA
* *
8199 TTATTAGTATATTTATAA
1 ATATTAGTATGTTTATAA
8217 AATAGATGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
21 4 0.13
22 2 0.06
23 20 0.65
24 2 0.06
25 3 0.10
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (23 bp):
ATATTAGTATGTTTATAACATAA
Found at i:11055 original size:41 final size:41
Alignment explanation
Indices: 11010--11093 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
11000 ATGTAACGAA
11010 CATATTCTTGAGATGCTTCGTTAAGTGTTGTAATCATCGAG
1 CATATTCTTGAGATGCTTCGTTAAGTGTTGTAATCATCGAG
11051 CATATTCTTGAGATGCTTCGTTAAGTGTTGTAATCATCGAG
1 CATATTCTTGAGATGCTTCGTTAAGTGTTGTAATCATCGAG
11092 CA
1 CA
11094 AGGTGGAATG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.38
Consensus pattern (41 bp):
CATATTCTTGAGATGCTTCGTTAAGTGTTGTAATCATCGAG
Found at i:12297 original size:45 final size:45
Alignment explanation
Indices: 12201--12409 Score: 310
Period size: 45 Copynumber: 4.6 Consensus size: 45
12191 AATGCATCTA
** ** * *
12201 TTCATGCTTATAATGCACTATTATGCATTTTTATTTATGGCATACT
1 TTCATGCCGATAATGCACCGTTATGCA-TTTCATTTATGGCATCCT
*
12247 TTCATGTCGATAATGCACCGTTATGCATTTCATTTATGGCATCCT
1 TTCATGCCGATAATGCACCGTTATGCATTTCATTTATGGCATCCT
12292 TTCATGCCGATAATGCACCGTTATGCATTTCATTTATGGCATCCT
1 TTCATGCCGATAATGCACCGTTATGCATTTCATTTATGGCATCCT
* * *
12337 TTCATACCGATAATGCACCGTTATGTATTTCATTTATGGCACCCT
1 TTCATGCCGATAATGCACCGTTATGCATTTCATTTATGGCATCCT
*
12382 TTCATGCCTATAATGCACCGTTATGCAT
1 TTCATGCCGATAATGCACCGTTATGCAT
12410 GGAAAAGGGG
Statistics
Matches: 149, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
45 127 0.85
46 22 0.15
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (45 bp):
TTCATGCCGATAATGCACCGTTATGCATTTCATTTATGGCATCCT
Found at i:12504 original size:54 final size:55
Alignment explanation
Indices: 12420--12706 Score: 330
Period size: 55 Copynumber: 5.3 Consensus size: 55
12410 GGAAAAGGGG
** ** * * * * *
12420 TTGCACACTTAGTGCCTATAC-GATCGTTCATCAACATATGATGAATTTCGT-GGG
1 TTGCACACAAAGTGCCTATACGGA-AATTCATAAACTTATTATGAATTTCTTAGGT
* * *
12474 TTGTACACATAGTGCCTATACGGAAATTCATAAACTTATTATGAATTTCTTAGAT
1 TTGCACACAAAGTGCCTATACGGAAATTCATAAACTTATTATGAATTTCTTAGGT
* * * *** *
12529 TTGCACGCAAAGTGTCAATAAAAAAATTCATAAACTTATTATGAATTTCTTAGTT
1 TTGCACACAAAGTGCCTATACGGAAATTCATAAACTTATTATGAATTTCTTAGGT
*
12584 TTGCACACAAAGTG-CTCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTT
1 TTGCACACAAAGTGCCT-ATACGGAAATTCATAAACTTATTATGAATTTCTTAGGT
*
12639 TTGCACACAAAGTGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTA-GT
1 TTGCACACAAAGTGCCTATACGGAAATTCATAAACTTATTATGAATTTCTTAGGT
*
12693 TTGCACACATAGTG
1 TTGCACACAAAGTG
12707 TCATTTGGTA
Statistics
Matches: 202, Mismatches: 27, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
54 55 0.27
55 146 0.72
56 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (55 bp):
TTGCACACAAAGTGCCTATACGGAAATTCATAAACTTATTATGAATTTCTTAGGT
Found at i:12734 original size:55 final size:55
Alignment explanation
Indices: 12478--12710 Score: 348
Period size: 55 Copynumber: 4.3 Consensus size: 55
12468 CGTGGGTTGT
* *
12478 ACACATAGTGC-CTATACGGAAATTCATAAACTTATTATGAATTTCTTAGATTTGC
1 ACACAAAGTGCTC-ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGC
* ***
12533 ACGCAAAGTG-TCAATAAAAAAATTCATAAACTTATTATGAATTTCTTAGTTTTGC
1 ACACAAAGTGCTC-ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGC
12588 ACACAAAGTGCTCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGC
1 ACACAAAGTGCTCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGC
*
12643 ACACAAAGTGCCCATACGGAAATTCATAAACTTATTATGAATTTCTTAG-TTTGC
1 ACACAAAGTGCTCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGC
*
12697 ACACATAGTG-TCAT
1 ACACAAAGTGCTCAT
12711 TTGGTAATCA
Statistics
Matches: 162, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
53 3 0.02
54 14 0.09
55 143 0.88
56 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35
Consensus pattern (55 bp):
ACACAAAGTGCTCATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGC
Found at i:14272 original size:20 final size:20
Alignment explanation
Indices: 14243--14305 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
14233 TTATTGAAAA
*
14243 TTTTAAGAAAAAAAAATTAT
1 TTTTATGAAAAAAAAATTAT
14263 TTTTATGAAAAAAAAAATTAT
1 TTTTATG-AAAAAAAAATTAT
*
14284 TTTTATGAAAAAAAAAATAT
1 TTTTATGAAAAAAAAATTAT
14304 TT
1 TT
14306 GCTTCAAAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
20 20 0.50
21 20 0.50
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (20 bp):
TTTTATGAAAAAAAAATTAT
Found at i:14276 original size:21 final size:21
Alignment explanation
Indices: 14250--14305 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
14240 AAATTTTAAG
14250 AAAAAAAAATTATTTTTATGA
1 AAAAAAAAATTATTTTTATGA
14271 AAAAAAAAATTATTTTTATGA
1 AAAAAAAAATTATTTTTATGA
14292 AAAAAAAAA-TATTT
1 AAAAAAAAATTATTT
14306 GCTTCAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 5 0.14
21 30 0.86
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
AAAAAAAAATTATTTTTATGA
Found at i:17808 original size:2 final size:2
Alignment explanation
Indices: 17801--17825 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
17791 CATTCAACAC
17801 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
17826 CAATAGTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18756 original size:24 final size:24
Alignment explanation
Indices: 18729--18775 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
18719 TGAAATCAAC
*
18729 AAATTATATGTTATGTTTCAAAAA
1 AAATTATATGTTATATTTCAAAAA
*
18753 AAATTATATGTTATATTTTAAAA
1 AAATTATATGTTATATTTCAAAA
18776 TTTGTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (24 bp):
AAATTATATGTTATATTTCAAAAA
Found at i:26227 original size:31 final size:32
Alignment explanation
Indices: 26170--26239 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 32
26160 AATTGAAAAA
26170 ATTATAATATATATATATATAATATAAGTTTAT
1 ATTATAATATATATATATATAATATAAG-TTAT
*
26203 ATTATAA-ACTATATA-AT-TATTATAAGTTAT
1 ATTATAATA-TATATATATATAATATAAGTTAT
26233 ATGTATA
1 AT-TATA
26240 TAATTATGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
30 6 0.18
31 12 0.35
32 3 0.09
33 13 0.38
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (32 bp):
ATTATAATATATATATATATAATATAAGTTAT
Found at i:26271 original size:12 final size:13
Alignment explanation
Indices: 26250--26287 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
26240 TAATTATGTT
*
26250 TATATGAACTATA
1 TATATAAACTATA
*
26263 TATA-AAACTATG
1 TATATAAACTATA
26275 TATATAAACTATA
1 TATATAAACTATA
26288 CATGTATAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (13 bp):
TATATAAACTATA
Found at i:26280 original size:14 final size:13
Alignment explanation
Indices: 26232--26286 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 13
26222 TTATAAGTTA
*
26232 TATGTATAT-AAT
1 TATGTATATAAAC
*
26244 TATGTTTATATGAAC
1 TATG--TATATAAAC
*
26259 TATATATA-AAAC
1 TATGTATATAAAC
26271 TATGTATATAAAC
1 TATGTATATAAAC
26284 TAT
1 TAT
26287 ACATGTATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
12 14 0.40
13 11 0.31
14 5 0.14
15 5 0.14
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (13 bp):
TATGTATATAAAC
Found at i:26374 original size:26 final size:26
Alignment explanation
Indices: 26334--26406 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
26324 TAATTTATAT
* *
26334 TAATATAGTATATATGTATGTATAAC
1 TAATATAGTATATATATATATATAAC
26360 TAATATAAGTA-ATATATATATAT-A-
1 TAATAT-AGTATATATATATATATAAC
26384 TATATATA-TATATATATATATAT
1 TA-ATATAGTATATATATATATAT
26407 TTATAGAAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
23 2 0.05
24 15 0.36
25 5 0.12
26 16 0.38
27 4 0.10
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.45
Consensus pattern (26 bp):
TAATATAGTATATATATATATATAAC
Found at i:26378 original size:2 final size:2
Alignment explanation
Indices: 26371--26411 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
26361 AATATAAGTA
*
26371 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26412 GAAACACTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:26510 original size:7 final size:7
Alignment explanation
Indices: 26494--26546 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
26484 CCTAAGTCCT
26494 AACCTCTA
1 AACCT-TA
*
26502 AACTTTA
1 AACCTTA
26509 AACCTTA
1 AACCTTA
*
26516 AACCCTA
1 AACCTTA
*
26523 AACCCTA
1 AACCTTA
*
26530 AACCCTA
1 AACCTTA
*
26537 AACCCTA
1 AACCTTA
26544 AAC
1 AAC
26547 TATATATGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
7 38 0.90
8 4 0.10
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (7 bp):
AACCTTA
Found at i:26517 original size:14 final size:14
Alignment explanation
Indices: 26507--26546 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
26497 CTCTAAACTT
*
26507 TAAACCTTAAACCC
1 TAAACCCTAAACCC
26521 TAAACCCTAAACCC
1 TAAACCCTAAACCC
26535 TAAACCCTAAAC
1 TAAACCCTAAAC
26547 TATATATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (14 bp):
TAAACCCTAAACCC
Found at i:26523 original size:21 final size:21
Alignment explanation
Indices: 26494--26547 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
26484 CCTAAGTCCT
* *
26494 AACCTCTAAACTTTAAACCTTA
1 AACC-CTAAACTCTAAACCCTA
*
26516 AACCCTAAACCCTAAACCCTA
1 AACCCTAAACTCTAAACCCTA
26537 AACCCTAAACT
1 AACCCTAAACT
26548 ATATATGTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (21 bp):
AACCCTAAACTCTAAACCCTA
Found at i:26586 original size:15 final size:16
Alignment explanation
Indices: 26568--26632 Score: 69
Period size: 17 Copynumber: 3.8 Consensus size: 16
26558 CTTATAATAC
26568 ATGTATATATA-AAAT
1 ATGTATATATATAAAT
26583 ATGTATAGTATATATAAACT
1 ATG--TA-TATATATAAA-T
26603 ATGTATATATATAACAT
1 ATGTATATATATAA-AT
*
26620 ATATATATATATA
1 ATGTATATATATA
26633 TCATTAAACA
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
15 3 0.07
17 24 0.56
18 9 0.21
19 3 0.07
20 4 0.09
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (16 bp):
ATGTATATATATAAAT
Found at i:26595 original size:20 final size:20
Alignment explanation
Indices: 26570--26615 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
26560 TATAATACAT
26570 GTATATATAAAATATGTATA
1 GTATATATAAAATATGTATA
*
26590 GTATATATAAACTATGTATA
1 GTATATATAAAATATGTATA
26610 -TATATA
1 GTATATA
26616 ACATATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 6 0.24
20 19 0.76
ACGTcount: A:0.48, C:0.02, G:0.09, T:0.41
Consensus pattern (20 bp):
GTATATATAAAATATGTATA
Found at i:28980 original size:7 final size:7
Alignment explanation
Indices: 28968--29034 Score: 89
Period size: 7 Copynumber: 9.6 Consensus size: 7
28958 ATATTTATAG
28968 AAACCCT
1 AAACCCT
28975 AAACCCT
1 AAACCCT
28982 AAACCCT
1 AAACCCT
*
28989 AAACCAT
1 AAACCCT
*
28996 AAATCCT
1 AAACCCT
29003 AAACCCT
1 AAACCCT
*
29010 AAACCCC
1 AAACCCT
* *
29017 ATATCCT
1 AAACCCT
29024 AAACCCT
1 AAACCCT
29031 AAAC
1 AAAC
29035 TATATATGTA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 50 1.00
ACGTcount: A:0.45, C:0.39, G:0.00, T:0.16
Consensus pattern (7 bp):
AAACCCT
Found at i:28992 original size:21 final size:21
Alignment explanation
Indices: 28968--29034 Score: 98
Period size: 21 Copynumber: 3.2 Consensus size: 21
28958 ATATTTATAG
*
28968 AAACCCTAAACCCTAAACCCT
1 AAACCCTAAATCCTAAACCCT
*
28989 AAACCATAAATCCTAAACCCT
1 AAACCCTAAATCCTAAACCCT
* *
29010 AAACCCCATATCCTAAACCCT
1 AAACCCTAAATCCTAAACCCT
29031 AAAC
1 AAAC
29035 TATATATGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.45, C:0.39, G:0.00, T:0.16
Consensus pattern (21 bp):
AAACCCTAAATCCTAAACCCT
Found at i:29041 original size:21 final size:21
Alignment explanation
Indices: 28979--29041 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
28969 AACCCTAAAC
*
28979 CCTAAACCCTAAACCATAAAT
1 CCTAAACCCTAAACCATATAT
**
29000 CCTAAACCCTAAACCCCATAT
1 CCTAAACCCTAAACCATATAT
*
29021 CCTAAACCCTAAACTATATAT
1 CCTAAACCCTAAACCATATAT
29042 GTATAGACAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (21 bp):
CCTAAACCCTAAACCATATAT
Found at i:29215 original size:37 final size:36
Alignment explanation
Indices: 29143--29213 Score: 99
Period size: 37 Copynumber: 2.0 Consensus size: 36
29133 TAGTTAATAT
*
29143 GTAACATATAGTATATGTATACATATAAACTATATAC
1 GTAACATATAGTACATGTATA-ATATAAACTATATAC
* *
29180 GTAACTTATAGTACATGTAT-GTATAAACTATATA
1 GTAACATATAGTACATGTATAATATAAACTATATA
29214 TAGTATATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 13 0.42
37 18 0.58
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.37
Consensus pattern (36 bp):
GTAACATATAGTACATGTATAATATAAACTATATAC
Found at i:29228 original size:19 final size:21
Alignment explanation
Indices: 29194--29293 Score: 104
Period size: 19 Copynumber: 4.9 Consensus size: 21
29184 CTTATAGTAC
*
29194 ATGTATGTATAAACTATATAT
1 ATGTATATATAAACTATATAT
29215 A-GTATATA-AAACTATATAT
1 ATGTATATATAAACTATATAT
*
29234 A--TATATA-AACCTATAGTAT
1 ATGTATATATAAACTATA-TAT
*
29253 ATGTATATATACAATCTATTTAT
1 ATGTATATATA-AA-CTATATAT
29276 ATGT-TATATAAACTATAT
1 ATGTATATATAAACTATAT
29294 GTAACCTATA
Statistics
Matches: 68, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
18 13 0.19
19 16 0.24
20 11 0.16
21 9 0.13
22 7 0.10
23 8 0.12
24 4 0.06
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.42
Consensus pattern (21 bp):
ATGTATATATAAACTATATAT
Found at i:29361 original size:21 final size:21
Alignment explanation
Indices: 29335--29410 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 21
29325 TAGTGTACTA
29335 TATAGTTTATACTTTAT-AACT
1 TATAGTTTATA-TTTATAAACT
*
29356 TATAGTATATAATTTATAAAC-
1 TATAGTTTAT-ATTTATAAACT
* * **
29377 TATAATTTATATTAATGTACT
1 TATAGTTTATATTTATAAACT
29398 ATATAGTTTATAT
1 -TATAGTTTATAT
29411 AATGTTAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
20 7 0.16
21 22 0.50
22 15 0.34
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.50
Consensus pattern (21 bp):
TATAGTTTATATTTATAAACT
Found at i:29475 original size:21 final size:22
Alignment explanation
Indices: 29427--29533 Score: 82
Period size: 22 Copynumber: 4.9 Consensus size: 22
29417 AATTATCTTA
*
29427 ACTATAATTTATATTAA-TATAGT
1 ACTATAATTTATA--AACTATACT
*
29450 A-TATAGTTTATAAACTATA-T
1 ACTATAATTTATAAACTATACT
* * *
29470 ACTAT-ATAATATAAATTATATT
1 ACTATAAT-TTATAAACTATACT
29492 AACTATAATTTATAAAACTATACT
1 -ACTATAATTTAT-AAACTATACT
29516 A-TATAATTTATAAA-TATA
1 ACTATAATTTATAAACTATA
29534 GTTTATATAA
Statistics
Matches: 70, Mismatches: 7, Indels: 17
0.74 0.07 0.18
Matches are distributed among these distances:
20 9 0.13
21 20 0.29
22 21 0.30
23 10 0.14
24 10 0.14
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.44
Consensus pattern (22 bp):
ACTATAATTTATAAACTATACT
Found at i:29476 original size:66 final size:64
Alignment explanation
Indices: 29398--29577 Score: 204
Period size: 66 Copynumber: 2.8 Consensus size: 64
29388 TTAATGTACT
* * * *
29398 ATATAGTTTATATAATGTTAATTATCTTAACTATAATTTATATTAATATAGTATATAGTTTATAA
1 ATATAGTCTATATAATATTAATTAT-TTAACTATAATTTATATTAATATACTATATAATTTATAA
* *
29463 ACTATA-TACTATATAATATAAATTATATTAACTATAATTTATA-AAACTATACTATATAATTTA
1 A-TATAGT-CTATATAATATTAATTAT-TTAACTATAATTTATATTAA-TATACTATATAATTTA
29526 TAA
62 TAA
* *
29529 ATATAGTTTATATAATATTAATT-TTATAGACTATATTTTATATTAATAT
1 ATATAGTCTATATAATATTAATTATT-TA-ACTATAATTTATATTAATAT
29578 TAATTACAAT
Statistics
Matches: 97, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
63 1 0.01
64 3 0.03
65 37 0.38
66 56 0.58
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.48
Consensus pattern (64 bp):
ATATAGTCTATATAATATTAATTATTTAACTATAATTTATATTAATATACTATATAATTTATAA
Found at i:29478 original size:45 final size:44
Alignment explanation
Indices: 29429--29540 Score: 110
Period size: 43 Copynumber: 2.6 Consensus size: 44
29419 TTATCTTAAC
*
29429 TATAATTTATATTAATATAGTATATAGTTTAT-AAACTATATACTA
1 TATAATTTATATTAATATAGTATATAATTTATAAAAC--TATACTA
* *
29474 TATAATATAAATT-ATAT--TAACTATAATTTATAAAACTATACTA
1 TATAATTTATATTAATATAGT-A-TATAATTTATAAAACTATACTA
*
29517 TATAATTTATA--AATATAGTTTATA
1 TATAATTTATATTAATATAGTATATA
29541 TAATATTAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
42 9 0.16
43 17 0.31
44 14 0.25
45 15 0.27
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (44 bp):
TATAATTTATATTAATATAGTATATAATTTATAAAACTATACTA
Found at i:29545 original size:14 final size:14
Alignment explanation
Indices: 29516--29582 Score: 57
Period size: 15 Copynumber: 4.6 Consensus size: 14
29506 AAACTATACT
29516 ATATAATTTATA-A
1 ATATAATTTATATA
*
29529 ATATAGTTTATATA
1 ATATAATTTATATA
29543 ATATTAATTT-TATA
1 ATA-TAATTTATATA
*
29557 GACTATATTTTATATTA
1 -A-TATAATTTATA-TA
29574 ATATTAATT
1 ATA-TAATT
29583 ACAATTATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 11 0.26
14 8 0.19
15 13 0.30
16 9 0.21
17 2 0.05
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (14 bp):
ATATAATTTATATA
Found at i:29556 original size:16 final size:16
Alignment explanation
Indices: 29535--29582 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
29525 ATAAATATAG
29535 TTTATATAATATTAAT
1 TTTATATAATATTAAT
* *
29551 TTTATAGACTA-T-AT
1 TTTATATAATATTAAT
29565 TTTATATTAATATTAAT
1 TTTATA-TAATATTAAT
29582 T
1 T
29583 ACAATTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
14 8 0.32
15 4 0.16
16 10 0.40
17 3 0.12
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (16 bp):
TTTATATAATATTAAT
Found at i:29579 original size:31 final size:29
Alignment explanation
Indices: 29522--29582 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 29
29512 TACTATATAA
29522 TTTATAAATATAGTTTATATAATATTAAT
1 TTTATAAATATAGTTTATATAATATTAAT
* *
29551 TTTATAGACTATATTTTATATTAATATTAAT
1 TTTATA-AATATAGTTTATA-TAATATTAAT
29582 T
1 T
29583 ACAATTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 6 0.21
30 11 0.39
31 11 0.39
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (29 bp):
TTTATAAATATAGTTTATATAATATTAAT
Found at i:29899 original size:23 final size:24
Alignment explanation
Indices: 29872--29925 Score: 92
Period size: 23 Copynumber: 2.3 Consensus size: 24
29862 TTATTTTTTC
*
29872 TTTACATAAATTAAACTATA-TAA
1 TTTACATAAACTAAACTATATTAA
29895 TTTACATAAACTAAACTATATTAA
1 TTTACATAAACTAAACTATATTAA
29919 TTTACAT
1 TTTACAT
29926 GTAATCATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 19 0.66
24 10 0.34
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTACATAAACTAAACTATATTAA
Found at i:30008 original size:22 final size:25
Alignment explanation
Indices: 29964--30017 Score: 87
Period size: 22 Copynumber: 2.3 Consensus size: 25
29954 AATAATTATG
29964 TTTTATATAATTTCTATTTAAATAA
1 TTTTATATAATTTCTATTTAAATAA
29989 TTTTAT-TAATTT-TA-TTAAATAA
1 TTTTATATAATTTCTATTTAAATAA
30011 TTTTATA
1 TTTTATA
30018 ATATGTCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 14 0.50
23 2 0.07
24 6 0.21
25 6 0.21
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (25 bp):
TTTTATATAATTTCTATTTAAATAA
Found at i:32956 original size:34 final size:34
Alignment explanation
Indices: 32916--32984 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
32906 TATAATATTG
32916 ATTATTTCACCGATTGGGTTGGTTTTATTAATTT
1 ATTATTTCACCGATTGGGTTGGTTTTATTAATTT
32950 ATTATTTCACCGATTGGGTTGGTTTTATTAATTT
1 ATTATTTCACCGATTGGGTTGGTTTTATTAATTT
32984 A
1 A
32985 AATAACACTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.22, C:0.09, G:0.17, T:0.52
Consensus pattern (34 bp):
ATTATTTCACCGATTGGGTTGGTTTTATTAATTT
Found at i:33000 original size:34 final size:34
Alignment explanation
Indices: 32928--33000 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
32918 TATTTCACCG
* ** **
32928 ATTGGGTTGGTTTTATTAATTTATTATTTCACCG
1 ATTGGGTTGGTTTTATTAATTTATAATAACACAA
32962 ATTGGGTTGGTTTTATTAATTTA-AATAACACTAA
1 ATTGGGTTGGTTTTATTAATTTATAATAACAC-AA
32996 ATTGG
1 ATTGG
33001 TGATTTATTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
33 5 0.15
34 28 0.85
ACGTcount: A:0.27, C:0.07, G:0.18, T:0.48
Consensus pattern (34 bp):
ATTGGGTTGGTTTTATTAATTTATAATAACACAA
Found at i:41006 original size:314 final size:313
Alignment explanation
Indices: 40311--41312 Score: 1446
Period size: 314 Copynumber: 3.2 Consensus size: 313
40301 CAGAGAAATA
* *
40311 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGGTGTTCTCTTGAATAGAGATGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
* *
40376 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTCTGGTGCAGCTTATTTG
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATG-TTTTCTGGTGCAGCCTATTTG
* * *
40441 TGCTGTGTCGAACATCTGGGGATTGTTTGGCTGAATGAAAATACAACCTCCTACTTTCTAATTCA
130 TGTTGTGTCGAACATCTGGGG-TTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCA
* ** *
40506 TTCTCTATTCTTATAATTTATAACTCCAATTTCACATCTCTTCACAAATGATAATGGTCAAATGA
194 TTCTCTA----T-T-A-TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGA
* *
40571 TTTTCAGCAAATAGGAAATCGGTGTTCCGAGCACAAAAATAATATTTTTTCTTTGTAATATCC
252 TTTTCAACAAATAGG-AATCGGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAATATCC
* *
40634 TATTTGAAACTTTTTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTAAATAGAGAGGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
* * *
40699 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAAACTTGATGTTTTCATGGTGCAGCCTATTTA
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTC-TGGTGCAGCCTATTTG
* * * *
40764 TGTTGTGTCAAACATCTTGGGTTGTTTGGCTAAATGAATATACAACTTACTACTTTCTAATTCAT
130 TGTTGTGTCGAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCAT
* *
40829 TGTCTATTATTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATAATTTTCAAC
195 TCTCTATTATTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGATTTTCAAC
* * * *
40894 ATATAGGAATCGGTGTACCGAGTACCAAAATAATTTTTTTTCTTTGTAATATCC
260 AAATAGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAATATCC
* * * * * *
40948 TTTTTGGAACTTTATTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGAGGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
* * *
41013 GATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCAATGTTTTCCTGGTGCAGTCTATTTG
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTT-CTGGTGCAGCCTATTTG
* * * * *
41078 TGTTGTGCCGGACATCTGGAGGTTGATTGGCTGAATGAATATACAACTTCCTACTTTTTGATTCA
130 TGTTGTGTCGAACATCTGG-GGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCA
*
41143 TTCTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGATTTTCAA
194 TTCTCTATTATTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGATTTTCAA
* * * * *
41208 TAGATAAGGAGTTGGTGTTCCGAGCACCAAAAGAATATTTTTTCTTTGTAATATCC
259 CAAAT-AGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAATATCC
41264 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTT
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTT
41313 TATGATTGGT
Statistics
Matches: 608, Mismatches: 67, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
314 173 0.28
315 162 0.27
316 88 0.14
317 1 0.00
318 1 0.00
322 50 0.08
323 133 0.22
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (313 bp):
TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGGT
GATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCTGGTGCAGCCTATTTGT
GTTGTGTCGAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCATT
CTCTATTATTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGATTTTCAACA
AATAGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAATATCC
Found at i:41521 original size:148 final size:148
Alignment explanation
Indices: 41253--41552 Score: 591
Period size: 148 Copynumber: 2.0 Consensus size: 148
41243 TATTTTTTCT
41253 TTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGA
1 TTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGA
*
41318 TTGGTTTTTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAA
66 TTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAA
41383 TTATTTTGATTTTTAATG
131 TTATTTTGATTTTTAATG
41401 TTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGA
1 TTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGA
41466 TTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAA
66 TTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAA
41531 TTATTTTGATTTTTAATG
131 TTATTTTGATTTTTAATG
41549 TTGT
1 TTGT
41553 GGTAAAAAAA
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 151 1.00
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.45
Consensus pattern (148 bp):
TTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGA
TTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAA
TTATTTTGATTTTTAATG
Found at i:42020 original size:505 final size:505
Alignment explanation
Indices: 41070--42073 Score: 1981
Period size: 505 Copynumber: 2.0 Consensus size: 505
41060 CCTGGTGCAG
41070 TCTATTTGTGTTGTGCCGGACATCTGGAGGTTGATTGGCTGAATGAATATACAACTTCCTACTTT
1 TCTATTTGTGTTGTGCCGGACATCTGGAGGTTGATTGGCTGAATGAATATACAACTTCCTACTTT
41135 TTGATTCATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATG
66 TTGATTCATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATG
41200 ATTTTCAATAGATAAGGAGTTGGTGTTCCGAGCACCAAAAGAATATTTTTTCTTTGTAATATCCT
131 ATTTTCAATAGATAAGGAGTTGGTGTTCCGAGCACCAAAAGAATATTTTTTCTTTGTAATATCCT
*
41265 ATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGATTGGTTTTTTTT
196 ATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGATTGGTTTCTTTT
41330 CTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAATTATTTTGATTT
261 CTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAATTATTTTGATTT
41395 TTAATGTTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCT
326 TTAATGTTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCT
41460 TTATGATTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATT
391 TTATGATTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATT
41525 AAAAAATTATTTTGATTTTTAATGTTGTGGTAAAAAAATTTGGTTTCTTT
456 AAAAAATTATTTTGATTTTTAATGTTGTGGTAAAAAAATTTGGTTTCTTT
*
41575 TCTATTTGTGTTGTGCTGGACATCTGGAGGTTGATTGGCTGAATGAATATACAACTTCCTACTTT
1 TCTATTTGTGTTGTGCCGGACATCTGGAGGTTGATTGGCTGAATGAATATACAACTTCCTACTTT
41640 TTGATTCATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATG
66 TTGATTCATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATG
*
41705 ATTTTCAATAGATAGGGAGTTGGTGTTCCGAGCACCAAAAGAATATTTTTTCTTTGTAATATCCT
131 ATTTTCAATAGATAAGGAGTTGGTGTTCCGAGCACCAAAAGAATATTTTTTCTTTGTAATATCCT
41770 ATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGATTGGTTTCTTTT
196 ATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGATTGGTTTCTTTT
41835 CTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAATTATTTTGATTT
261 CTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAATTATTTTGATTT
41900 TTAATGTTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCT
326 TTAATGTTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCT
41965 TTATGATTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATT
391 TTATGATTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATT
42030 AAAAAATTATTTTGATTTTTAATGTTGTGGTAAAAAAATTTGGT
456 AAAAAATTATTTTGATTTTTAATGTTGTGGTAAAAAAATTTGGT
42074 GACTAATGGT
Statistics
Matches: 496, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
505 496 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (505 bp):
TCTATTTGTGTTGTGCCGGACATCTGGAGGTTGATTGGCTGAATGAATATACAACTTCCTACTTT
TTGATTCATTCTCTATTCTTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATG
ATTTTCAATAGATAAGGAGTTGGTGTTCCGAGCACCAAAAGAATATTTTTTCTTTGTAATATCCT
ATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGATTGGTTTCTTTT
CTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAATTATTTTGATTT
TTAATGTTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCT
TTATGATTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATT
AAAAAATTATTTTGATTTTTAATGTTGTGGTAAAAAAATTTGGTTTCTTT
Found at i:42026 original size:148 final size:148
Alignment explanation
Indices: 41758--42057 Score: 600
Period size: 148 Copynumber: 2.0 Consensus size: 148
41748 TATTTTTTCT
41758 TTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGA
1 TTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGA
41823 TTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAA
66 TTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAA
41888 TTATTTTGATTTTTAATG
131 TTATTTTGATTTTTAATG
41906 TTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGA
1 TTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGA
41971 TTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAA
66 TTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAA
42036 TTATTTTGATTTTTAATG
131 TTATTTTGATTTTTAATG
42054 TTGT
1 TTGT
42058 GGTAAAAAAA
Statistics
Matches: 152, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
148 152 1.00
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (148 bp):
TTGTAATATCCTATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTTATGA
TTGGTTTCTTTTCTATATGAAGTAAAGATATAATGTTAAAAAACCACTAACATTTGATTAAAAAA
TTATTTTGATTTTTAATG
Found at i:42434 original size:24 final size:24
Alignment explanation
Indices: 42402--42447 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
42392 ATGCAGCACA
*
42402 TATCATGTGTCTAAAGTGATGACG
1 TATCATGTGTCCAAAGTGATGACG
42426 TATCATGTGTCCAAAGTGATGA
1 TATCATGTGTCCAAAGTGATGA
42448 AATGACATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (24 bp):
TATCATGTGTCCAAAGTGATGACG
Found at i:46281 original size:23 final size:23
Alignment explanation
Indices: 46251--46325 Score: 132
Period size: 23 Copynumber: 3.3 Consensus size: 23
46241 GGTAATTATG
46251 ACTGGTTTCAGCCTCGATGTTTT
1 ACTGGTTTCAGCCTCGATGTTTT
46274 ACTGGTTTCAGCCTCGATGTTTT
1 ACTGGTTTCAGCCTCGATGTTTT
*
46297 ACTAGTTTCAGCCTCGATGTTTT
1 ACTGGTTTCAGCCTCGATGTTTT
*
46320 TCTGGT
1 ACTGGT
46326 GCAGCCTATT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.44
Consensus pattern (23 bp):
ACTGGTTTCAGCCTCGATGTTTT
Found at i:48858 original size:325 final size:321
Alignment explanation
Indices: 48136--49151 Score: 1359
Period size: 325 Copynumber: 3.2 Consensus size: 321
48126 CAGAGAAATA
* * *
48136 TATTTGAAACTTTCTTTTCTATAATCAATAAGTATAGAGATGTTCTCTTGAACAGAGATGAAGAT
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGATGAAGGT
*
48201 GATGAAGTATAGGAGGTAATTATGACTGGTATCAGCCTCGATG-TTTTCTTGGTGTAGCTAGCCT
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTC-T-G-GT-GC-AGCCT
* * * * * * * *
48265 GTTTCTGCTGTGCCGATCATCTGAGGGTTGTTTGGCTGAATGAATTTACAACTTCCTACATTCTG
126 ATTTGTGATGTGCCGAACATCTGGGGGTTTTTTGGCTGAATGAATATACAACTTCCTACTTTCTG
* *
48330 ATTCA--CTCTATTCTTATAAGTTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCA
191 ATTCATTCTCTA-TCTTATAA-TTATAACTCCAATTTCACATCTCTTCACAAATGATAGTGGCCA
* * *
48393 AATGATTTTCAGCATATAGGGAATCTATGTCCTAAGCACCAAAATAATAATTTTTTCTTTGTAAT
254 AATGATTTTCAGCATATAGGGAATCGATGTTCTGAGCACCAAAATAAT-ATTTTTTCTTTGTAAT
**
48458 ATTT
318 ATCC
* * * *
48462 TATTTGGAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAAAGGAAGGG
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGATGAAGGT
* * *
48527 GATGAAGTATAAGAGGTAATTATAACTGGTTTCAGCCTCGATGTTTTTCTGGTGCAACCTATTTG
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTCTGGTGCAGCCTATTTG
* *
48592 TGATATGCCGAACATCTGGGGGTTTTTTGGCTGAATGAATATACAACTTCCTACTTTCTAATTCA
131 TGATGTGCCGAACATCTGGGGGTTTTTTGGCTGAATGAATATACAACTTCCTACTTTCTGATTCA
* * * *
48657 TTCTCTATCCTTATAATTTATAACTCCAATTTCACATCTCTTCACTAATGACAATGGTCAAATGA
196 TTCTCTAT-CTTATAA-TTATAACTCCAATTTCACATCTCTTCACAAATGATAGTGGCCAAATGA
* *
48722 TTTTCAGCATATAGGAAATCGGTGTTCTGAGCACCAAAATAATATTTTTTTTCTTTGTAATATCC
259 TTTTCAGCATATAGGGAATCGATGTTCTGAGCACCAAAATAATA--TTTTTTCTTTGTAATATCC
* * *
48787 TATTTGAAACTTTCTTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGATGAAGGT
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGATGAAGGT
* * *
48852 GATGAAGTATAGGAGGTAATTATGATTGGTTTCATCCTCGATGTTTTCCTGGTGCAGCCTATTTG
66 GATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTCTGGTGCAGCCTATTTG
* * * * *
48917 TGTTGTGCCGGACATCTGGAGGTTGTTTT-ACTGAATGAATATACGACTTCCTACTTTCTGATTC
131 TGATGTGCCGAACATCTGGGGGTT-TTTTGGCTGAATGAATATACAACTTCCTACTTTCTGATTC
* *
48981 ATTCTCTA---T-T-ATTATAATTCCAATTTCACATCTC-TCAACAAATGATAGTGGCCAAATAA
195 ATTCTCTATCTTATAATTATAACTCCAATTTCACATCTCTTC-ACAAATGATAGTGGCCAAATGA
* * * *
49040 TTTTCAGTATATAGGGAGTCGATGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAATAACC
259 TTTTCAGCATATAGGGAATCGATGTTCTGAGCACCAAAATAATATTTTTTCTTTGTAATATCC
* *
49103 TATTTGAAACTTTATTTTCTATAAGCAATAGGTATAGAGATGTTCTCTT
1 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTT
49152 TATGATTGGT
Statistics
Matches: 610, Mismatches: 72, Indels: 26
0.86 0.10 0.04
Matches are distributed among these distances:
316 62 0.10
317 2 0.00
318 78 0.13
319 1 0.00
320 1 0.00
321 1 0.00
322 64 0.10
323 4 0.01
324 94 0.15
325 195 0.32
326 103 0.17
327 5 0.01
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (321 bp):
TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGATGAAGGT
GATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTCTGGTGCAGCCTATTTG
TGATGTGCCGAACATCTGGGGGTTTTTTGGCTGAATGAATATACAACTTCCTACTTTCTGATTCA
TTCTCTATCTTATAATTATAACTCCAATTTCACATCTCTTCACAAATGATAGTGGCCAAATGATT
TTCAGCATATAGGGAATCGATGTTCTGAGCACCAAAATAATATTTTTTCTTTGTAATATCC
Found at i:49686 original size:14 final size:14
Alignment explanation
Indices: 49667--49706 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
49657 AGCACCAAAA
49667 TAATTTTTTTTTTG
1 TAATTTTTTTTTTG
* *
49681 TAATTTTCTATTTG
1 TAATTTTTTTTTTG
49695 TAATTTTCTTTT
1 TAATTTT-TTTT
49707 CTATAAGCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 19 0.90
15 2 0.10
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.72
Consensus pattern (14 bp):
TAATTTTTTTTTTG
Found at i:49808 original size:23 final size:23
Alignment explanation
Indices: 49778--49829 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
49768 GGTAATTATG
49778 ACTGGTTTCAGCCTCGATGTTTT
1 ACTGGTTTCAGCCTCGATGTTTT
49801 ACTGGTTTCAGCCTCGATGTTTT
1 ACTGGTTTCAGCCTCGATGTTTT
*
49824 TCTGGT
1 ACTGGT
49830 GCAGCCTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.12, C:0.21, G:0.23, T:0.44
Consensus pattern (23 bp):
ACTGGTTTCAGCCTCGATGTTTT
Found at i:50123 original size:347 final size:328
Alignment explanation
Indices: 49365--50399 Score: 1132
Period size: 324 Copynumber: 3.1 Consensus size: 328
49355 CAGAGAAATA
* * * * *
49365 TATTTGAAACTTTCTTTTCTATAAGCAATAAGTATAGGGATGTTCTCTTGAATAGAGATGAA-GA
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATCTTCTCTTGAATAGAAAAGAATG-
*
49429 TGATGAAGTATAGGAGGTAA-T-T-A-TGACTGGTTTCAGCCTCGATG-TTTTCTTGGTGTAGCT
65 GGATGAAGTATAGGAGGTAATTATGATTGACTGGTTTCAGCCTCGATGTTTTTC-T-G-GT-GC-
* * * * *
49489 AGCCTGTTTCTGCTGTGCCGAACATCT-GAGGTTGTTTGGCTGAATGAATTTACAACTTCCTGCA
125 AGCCTATTTGTGTTGTGCCGAACATCTGGAGGTTGTTTGGCTGAATGAATTTACAACTTCCTACT
* * * * * * * *
49553 TTCTGATTTATTCTCTATTCTTATAAGTTATAATTCCAATTTCATATATCTCCACAAATGACAGT
190 TTCTAATTAATTCTCTATTATTATAACTTATAACTCCAATTTCACATCTCTTCACAAATGACAGT
* *
49618 GGCCAAATGATTTTCAGCATATAGGGAATCTATG-TCCTGAGCACCAAAAT-A-ATTTTTTT-TT
255 GGCCAAATGATTTTCAGCAAATAGGGAATCGATGTTCC-GAGCACCAAAATAATATTTTTTTCTT
* *
49679 TGTAATTTTC
319 TGTAATATCC
* * *
49689 TATTTGTAATTTTCTTTTCTATAAGCAATAAGTATAGAGATCTTCTCTTGAATAGAAAAGAATGG
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATCTTCTCTTGAATAGAAAAGAATGG
*
49754 GATGAAGTATATGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTACTGGTTTCAGCCTCGAT
66 GATGAAGTATAGGAGGTAA-T-T-A-T-G----A---T---TG----ACTGGTTTCAGCCTCGAT
* * *
49819 GTTTTTCTGGTGCAGCCTATTTGTGTTATACCGAACATCTGGGGGTTGTTTGGCTGAATGAATTT
112 GTTTTTCTGGTGCAGCCTATTTGTGTTGTGCCGAACATCTGGAGGTTGTTTGGCTGAATGAATTT
* *
49884 ACAACTTCCTACTTTCTAATTCATTCTCTATTATTATAATTTATAACTCCAATTTCACATCTCTT
177 ACAACTTCCTACTTTCTAATTAATTCTCTATTATTATAACTTATAACTCCAATTTCACATCTCTT
* * * * *
49949 CACAAATGACAATGGTCAAATGATTTTCAGCAGATAGGAAATCGGTGTTCCGAGCACCAAAATAA
242 CACAAATGACAGTGGCCAAATGATTTTCAGCAAATAGGGAATCGATGTTCCGAGCACCAAAATAA
50014 TATTTTTTTCTTTGTAATATCC
307 TATTTTTTTCTTTGTAATATCC
* * * * *
50036 TATTTGAAACTTTCTTTTCTATAAGTAATAAGTATAGAGATTTTTTCTTGAATAGAGATGAA-GG
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATCTTCTCTTGAATAGAAAAGAATGG
* *
50100 TGATGAAGTATAGGAGGTAATTATGATTG--T--TTTCATCCTCGATGTTTTCCTGGTGCAGCCT
66 -GATGAAGTATAGGAGGTAATTATGATTGACTGGTTTCAGCCTCGATGTTTTTCTGGTGCAGCCT
* * * *
50161 ATTTGTGTTGTGCCGGACATCTGGAGGTTGTTTGACTGAATGAATATACGACTTCCTACTTTCTA
130 ATTTGTGTTGTGCCGAACATCTGGAGGTTGTTTGGCTGAATGAATTTACAACTTCCTACTTTCTA
* **
50226 ATTAATTCTC---TA-T-T--CTTATAACTCCAATTTCACATCTC-TCTACGAATGATGGTGGCC
195 ATTAATTCTCTATTATTATAACTTATAACTCCAATTTCACATCTCTTC-ACAAATGACAGTGGCC
* *
50283 AAATGATTTTCAGTAAATAGGGAGTCGATGTTCCGAGCACCAAAATAATA--TTTTTCTTTGTAA
259 AAATGATTTTCAGCAAATAGGGAATCGATGTTCCGAGCACCAAAATAATATTTTTTTCTTTGTAA
*
50346 TAACC
324 TATCC
* *
50351 TATTTGAAACTTTCTTTTCTATAAGAAATAGGTATAGAGATGTTCTCTT
1 TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATCTTCTCTT
50400 TATGATTGGT
Statistics
Matches: 613, Mismatches: 66, Indels: 73
0.82 0.09 0.10
Matches are distributed among these distances:
315 62 0.10
316 2 0.00
317 79 0.13
319 1 0.00
320 1 0.00
321 2 0.00
324 170 0.28
325 1 0.00
326 1 0.00
327 1 0.00
330 1 0.00
332 2 0.00
335 1 0.00
336 1 0.00
338 1 0.00
342 1 0.00
343 25 0.04
344 134 0.22
345 7 0.01
346 12 0.02
347 103 0.17
348 5 0.01
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (328 bp):
TATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATCTTCTCTTGAATAGAAAAGAATGG
GATGAAGTATAGGAGGTAATTATGATTGACTGGTTTCAGCCTCGATGTTTTTCTGGTGCAGCCTA
TTTGTGTTGTGCCGAACATCTGGAGGTTGTTTGGCTGAATGAATTTACAACTTCCTACTTTCTAA
TTAATTCTCTATTATTATAACTTATAACTCCAATTTCACATCTCTTCACAAATGACAGTGGCCAA
ATGATTTTCAGCAAATAGGGAATCGATGTTCCGAGCACCAAAATAATATTTTTTTCTTTGTAATA
TCC
Found at i:50883 original size:24 final size:24
Alignment explanation
Indices: 50844--50889 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
50834 ATGTAACACA
* *
50844 TATCATGTGTCTAAAGTGATGACG
1 TATCATGTATCCAAAGTGATGACG
50868 TATCATGTATCCAAAGTGATGA
1 TATCATGTATCCAAAGTGATGA
50890 AATGACATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.33
Consensus pattern (24 bp):
TATCATGTATCCAAAGTGATGACG
Found at i:54871 original size:323 final size:319
Alignment explanation
Indices: 54227--55883 Score: 1950
Period size: 323 Copynumber: 5.2 Consensus size: 319
54217 TTTAACTGAG
* *
54227 AATAT-CTATTTGGAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGA
1 AATATCCTATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGA
* * * * * * *
54291 TGAATGTGATGAAATATAGGAGGTAATTATAAATAGTTTCAACCTCGATGTTTTCTTGGTGTAGC
66 GGAAGGTGATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCT-G-GT-G-
* * *
54356 CAGCCTATTTCTGCTGTGCCGAACATCTGAGGGTTGTTTGGCTGAATGAATATGCAACTTCCTAC
127 CAGCCTATTTGTGTTGTGCCGAACATCTG-GGGTTGTTTGGCTGAATGAATATACAACTTCCTAC
* * * * * ** **
54421 TTTCTGATTCATTCTCTAGTATTATAAGTTATAACTCAAATTTCATATCTCTCCACATTTGATGG
191 TTTCTAATTCATTCTCTATTCTTATAA-TTATAACTCCAATTTCACATCTCTCCACAAATGATAA
**
54486 TGGCCAAATGATTTTTCAGCAGATAGGGAATCTATG-TCCTGAGCACCAAAATAATATTTTTTCT
255 TGGCCAAATGA-TTTTCAGC--ATAGGGAATCGGTGTTCC-GAGCACCAAAATAATATTTTTTCT
54550 TTGT
316 TTGT
* * *
54554 AATATTCTATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAAA
1 AATATCCTATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGA
* * * **
54619 GAAAGGGGATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTTTGGTGCAGC
66 GGAAGGTGATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGC
**
54684 CTATTTGTGTTGTGCTAAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCT
131 CTATTTGTGTTGTGCCGAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCT
* * * *
54749 AATTCATTCTTTATTCTTATAATTTATAACTCCAATTTCATATCTCTTCACAAATGGTAATGGCC
196 AATTCATTCTCTATTCTTATAA-TTATAACTCCAATTTCACATCTCTCCACAAATGATAATGGCC
*** * *
54814 AAATGATTTTCAGCATATCCAATCGGTGTTTCAAGCACCAAAATAATATATTTTTTTCTTTGT
260 AAATGATTTTCAGCATAGGGAATCGGTGTTCCGAGCACCAAAAT-A-ATA-TTTTTTCTTTGT
* * *
54877 AATATCCTATTTGAAACTTTTTTTTCTATAAGAAATAAGTATAAAGATGTTCTCTTAAATAGAGA
1 AATATCCTATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGA
* * * * * * *
54942 GGAAGGTGATGAAGTATAGGAGGTAATTATAATTGGTTTCAAACTTGATATTTTCCTGGTACAAC
66 GGAAGGTGATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGC
** * * *
55007 CTATTTGTAATGTGCCGAACATCTGGGGGTTGTTTGGTTGAATGAATATACAATTTCCTACTTTT
131 CTATTTGTGTTGTGCCGAACATCT-GGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTC
* * *
55072 TAATTCATTCTCTATTCTTAAAATTTATAACTCCAATTTCACATCTCTTCACAAATGA-CATGGC
195 TAATTCATTCTCTATTCTTATAA-TTATAACTCCAATTTCACATCTCTCCACAAATGATAATGGC
* * *
55136 CAAATGACTTTCAGTAGATAGGGAATTGGTGTTCCGAGCACCAAAATAAT-TTTTTT-TTTGT
259 CAAATGATTTTCAG--CATAGGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGT
*
55197 AATATCCTATTTGAAACTTT-TTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATATAGA
1 AATATCCTATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGA
* * *
55261 GGAAGGTGATGAAGTATAGGAGGTAATTATGACTGGTTTCAAACTTGATGTTTTCCTGGTGCGGC
66 GGAAGGTGATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGC
* * * * * *
55326 CTATTTATGTTGTGTCGAACATTTGGGCTTATTTGGCTAAATGAATATACAACTTCCTACTTTCT
131 CTATTTGTGTTGTGCCGAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCT
* * *
55391 AATTCA---T-TA-TC-TATTATTATAACTCCAATTTCACATCTCTCCGCAAATGATTATGGCCA
196 AATTCATTCTCTATTCTTATAATTATAACTCCAATTTCACATCTCTCCACAAATGATAATGGCCA
* * * * **
55450 AATAATTTTCAACAGATAGGGAATCGATGTTCCGAGTAATAAAATAATATTTTTTCTTTGT
261 AATGATTTTCAGC--ATAGGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGT
* * * * * * * *
55511 AAAATTCCTATTTGGAACTTTCTTTTCTATAAGTATTATGTATAGAGTTTTTTTCTTGAATAGAG
1 AATA-TCCTATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAG
* * *
55576 GGGAAGGTGATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTTCCTGGTGCAA
65 AGGAAGGTGATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAG
* * * * *
55641 TCTATTTGTGTTGTG-CAAGACATCTGGAGGTTGTTTGGTTGAATGAATATGCAACTTCCTATTT
130 CCTATTTGTGTTGTGCCGA-ACATCTGG-GGTTGTTTGGCTGAATGAATATACAACTTCCTACTT
* * **
55705 TTTGATTCATTCTCTATTC------TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGG
193 TCTAATTCATTCTCTATTCTTATAATTATAACTCCAATTTCACATCTCTCCACAAATGATAATGG
** *
55764 CCAAATGATTTTCAATAAATA-GGAAGTCAGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGT
258 CCAAATGATTTTC-A-GCATAGGGAA-TCGGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGT
* * * * *
55828 AATATCCTATTTAAAACTTTCTTTTCAATAAGCAATAATTATAGAGATGTTGTCTT
1 AATATCCTATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTT
55884 TATGATTAGT
Statistics
Matches: 1149, Mismatches: 156, Indels: 61
0.84 0.11 0.04
Matches are distributed among these distances:
311 32 0.03
312 47 0.04
313 8 0.01
314 10 0.01
315 18 0.02
316 161 0.14
317 125 0.11
318 42 0.04
319 120 0.10
320 46 0.04
321 11 0.01
322 13 0.01
323 262 0.23
324 117 0.10
325 25 0.02
326 2 0.00
327 6 0.01
328 104 0.09
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (319 bp):
AATATCCTATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGA
GGAAGGTGATGAAGTATAGGAGGTAATTATGACTGGTTTCAACCTCGATGTTTTCCTGGTGCAGC
CTATTTGTGTTGTGCCGAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCT
AATTCATTCTCTATTCTTATAATTATAACTCCAATTTCACATCTCTCCACAAATGATAATGGCCA
AATGATTTTCAGCATAGGGAATCGGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGT
Found at i:55675 original size:635 final size:640
Alignment explanation
Indices: 54232--55883 Score: 2095
Period size: 635 Copynumber: 2.6 Consensus size: 640
54222 CTGAGAATAT
* * *
54232 CTATTTGGAACTTTCTTTTCTATAAGCAATAAGTATAGAGATGTTCTCTTGAATAGAGATGAATG
1 CTATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGG
* * * *
54297 TGATGAAATATAGGAGGTAATTATAAATAGTTTCAACCTCGATGTTTTCTTGGTGTAGCCAGCCT
66 TGATGAAGTATAGGAGGTAATTATAAATGGTTTCAACCTCGATGTTTTCCT-G-GT-G-CAACCT
* * * *
54362 ATTTCTGCTGTGCCGAACATCT-GAGGGTTGTTTGGCTGAATGAATATGCAACTTCCTACTTTCT
127 ATTTGTGATGTGCCGAACATCTGGA-GGTTGTTTGGTTGAATGAATATGCAACTTCCTACTTTTT
* * * * **
54426 GATTCATTCTCTAGTATTATAAGTTATAACTCAAATTTCATATCTCTCCACATTTGATGGTGGCC
191 GATTCATTCTCTATTCTTA-AA-TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCC
* *
54491 AAATGATTTTTCAGCAGATAGGGAATCTATG-TCCTGAGCACCAAAATAATATTTTTTCTTTGTA
254 AAATGA-TTTTCAGTAGATAGGGAAT-TGTGTTCC-GAGCACCAAAATAATATTTTTTCTTTGTA
* *
54555 ATATTCTATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAAAG
316 ATATCCTATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAAAG
** **
54620 AAAGGGGATGAAGTATAGGAGGTAATTATGACTGGTTTCAGCCTCGATGTTTTTTTGGTGCAGCC
381 AAAGGGGATGAAGTATAGGAGGTAATTATGACTGGTTTCAAACTCGATGTTTTCCTGGTGCAGCC
* * * *
54685 TATTTGTGTTGTGCTAAACATCTGGGGTTGTTTGGCTGAATGAATATACAACTTCCTACTTTCTA
446 TATTTATGTTGTGCTAAACATCTGGGCTTATTTGGCTAAATGAATATACAACTTCCTACTTTCTA
* * *
54750 ATTCATTCTTTATTCTTATAATTTATAACTCCAATTTCATATCTCTTCACAAATGGTAATGGCCA
511 ATTCA---TTTATTCTTATAATTTATAACTCCAATTTCACATCTCTCCACAAATGATAATGGCCA
* * * * * * *
54815 AATGATTTTCAGCATATCCAATCGGTGTTTCAAGCACCAAAATAATATATTTTTTTCTTTGTAAT
573 AATAATTTTCAACATAGCCAATCGATGTTCCAAGCAACAAAATAATATATTTTTTTCTTTGTAAA
54880 ATC
638 ATC
* * * *
54883 CTATTTGAAACTTTTTTTTCTATAAGAAATAAGTATAAAGATGTTCTCTTAAATAGAGAGGAAGG
1 CTATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGG
* * * * *
54948 TGATGAAGTATAGGAGGTAATTATAATTGGTTTCAAACTTGATATTTTCCTGGTACAACCTATTT
66 TGATGAAGTATAGGAGGTAATTATAAATGGTTTCAACCTCGATGTTTTCCTGGTGCAACCTATTT
* * * * *
55013 GTAATGTGCCGAACATCTGGGGGTTGTTTGGTTGAATGAATATACAATTTCCTACTTTTTAATTC
131 GTGATGTGCCGAACATCTGGAGGTTGTTTGGTTGAATGAATATGCAACTTCCTACTTTTTGATTC
* **
55078 ATTCTCTATTCTTAAAATTTATAACTCCAATTTCACATCTCTTCACAAATGA-CATGGCCAAATG
196 ATTCTCTATTCTT-AAA-TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATG
*
55142 ACTTTCAGTAGATAGGGAATTGGTGTTCCGAGCACCAAAATAAT-TTTTTT-TTTGTAATATCCT
259 ATTTTCAGTAGATAGGGAATT-GTGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAATATCCT
* * * *
55205 ATTTGAAACTTT-TTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATATAGAGGAAGGTG
323 ATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAAAGAAAGGGG
* *
55269 ATGAAGTATAGGAGGTAATTATGACTGGTTTCAAACTTGATGTTTTCCTGGTGCGGCCTATTTAT
388 ATGAAGTATAGGAGGTAATTATGACTGGTTTCAAACTCGATGTTTTCCTGGTGCAGCCTATTTAT
* *
55334 GTTGTG-TCGAACATTTGGGCTTATTTGGCTAAATGAATATACAACTTCCTACTTTCTAATTCA-
453 GTTGTGCT-AAACATCTGGGCTTATTTGGCTAAATGAATATACAACTTCCTACTTTCTAATTCAT
* * *
55397 TTA-TC-TATTA-TTATAACTCCAATTTCACATCTCTCCGCAAATGATTATGGCCAAATAATTTT
517 TTATTCTTATAATTTATAACTCCAATTTCACATCTCTCCACAAATGATAATGGCCAAATAATTTT
** * * *
55459 CAACAGATAGGGAATCGATGTTCCGAGTAATAAAAT-A-ATA-TTTTTTCTTTGTAAAATTC
582 CAAC--ATAGCCAATCGATGTTCCAAGCAACAAAATAATATATTTTTTTCTTTGTAAAA-TC
* * * * * * *
55518 CTATTTGGAACTTTCTTTTCTATAAGTATTATGTATAGAGTTTTTTTCTTGAATAGAGGGGAAGG
1 CTATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGG
* * * *
55583 TGATGAAGTATAGGAGGTAATTATGACTGGTTTCATCCTCGATGTTTTCCTGGTGCAATCTATTT
66 TGATGAAGTATAGGAGGTAATTATAAATGGTTTCAACCTCGATGTTTTCCTGGTGCAACCTATTT
* * *
55648 GTGTTGTG-CAAGACATCTGGAGGTTGTTTGGTTGAATGAATATGCAACTTCCTATTTTTTGATT
131 GTGATGTGCCGA-ACATCTGGAGGTTGTTTGGTTGAATGAATATGCAACTTCCTACTTTTTGATT
55712 CATTCTCTATTC-----TTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGA
195 CATTCTCTATTCTTAAATTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGA
* * *
55772 TTTTCAATAAATA-GGAAGTCAGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAATATCCT
260 TTTTCAGTAGATAGGGAA-T-TGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAATATCCT
* * * * *
55836 ATTTAAAACTTTCTTTTCAATAAGCAATAATTATAGAGATGTTGTCTT
323 ATTTGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTT
55884 TATGATTAGT
Statistics
Matches: 873, Mismatches: 113, Indels: 49
0.84 0.11 0.05
Matches are distributed among these distances:
628 37 0.04
629 44 0.05
630 6 0.01
631 24 0.03
632 31 0.04
634 17 0.02
635 230 0.26
636 5 0.01
637 23 0.03
638 3 0.00
641 1 0.00
642 162 0.19
643 23 0.03
644 7 0.01
645 34 0.04
646 14 0.02
647 105 0.12
648 2 0.00
649 2 0.00
650 1 0.00
651 102 0.12
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (640 bp):
CTATTTGGAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAGAGGAAGG
TGATGAAGTATAGGAGGTAATTATAAATGGTTTCAACCTCGATGTTTTCCTGGTGCAACCTATTT
GTGATGTGCCGAACATCTGGAGGTTGTTTGGTTGAATGAATATGCAACTTCCTACTTTTTGATTC
ATTCTCTATTCTTAAATTATAACTCCAATTTCACATCTCTCCACAAATGATGGTGGCCAAATGAT
TTTCAGTAGATAGGGAATTGTGTTCCGAGCACCAAAATAATATTTTTTCTTTGTAATATCCTATT
TGAAACTTTCTTTTCTATAAGAAATAAGTATAGAGATGTTCTCTTGAATAGAAAGAAAGGGGATG
AAGTATAGGAGGTAATTATGACTGGTTTCAAACTCGATGTTTTCCTGGTGCAGCCTATTTATGTT
GTGCTAAACATCTGGGCTTATTTGGCTAAATGAATATACAACTTCCTACTTTCTAATTCATTTAT
TCTTATAATTTATAACTCCAATTTCACATCTCTCCACAAATGATAATGGCCAAATAATTTTCAAC
ATAGCCAATCGATGTTCCAAGCAACAAAATAATATATTTTTTTCTTTGTAAAATC
Found at i:56395 original size:24 final size:24
Alignment explanation
Indices: 56337--56388 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
56327 ATGATGTAGC
* *
56337 AAATATCATGTTTCTAAAGTGATG
1 AAATATCATGTGTCCAAAGTGATG
*
56361 AAGTATCATGTGTCCAAAGTGATG
1 AAATATCATGTGTCCAAAGTGATG
56385 AAAT
1 AAAT
56389 GACATGTCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (24 bp):
AAATATCATGTGTCCAAAGTGATG
Found at i:57057 original size:20 final size:20
Alignment explanation
Indices: 57032--57086 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
57022 CACGGAATGT
57032 AAGATTACCAGTGGAAATAA
1 AAGATTACCAGTGGAAATAA
57052 AAGATTACCAGTGGAAATAA
1 AAGATTACCAGTGGAAATAA
57072 AAGATTACCAG-GGAA
1 AAGATTACCAGTGGAA
57087 TAGGATTACT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 4 0.11
20 31 0.89
ACGTcount: A:0.49, C:0.11, G:0.22, T:0.18
Consensus pattern (20 bp):
AAGATTACCAGTGGAAATAA
Found at i:59133 original size:34 final size:35
Alignment explanation
Indices: 59076--59145 Score: 106
Period size: 34 Copynumber: 2.0 Consensus size: 35
59066 TGAATTTCCT
**
59076 ATCCTGAACTTTTTTTGTTAGTAATAAATATAGAG
1 ATCCTGAACTTTTTTTGCAAGTAATAAATATAGAG
*
59111 ATCCTGAAC-TTTTTTGCAAGTAATAAATATGGAG
1 ATCCTGAACTTTTTTTGCAAGTAATAAATATAGAG
59145 A
1 A
59146 GATTCTCTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 23 0.72
35 9 0.28
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.39
Consensus pattern (35 bp):
ATCCTGAACTTTTTTTGCAAGTAATAAATATAGAG
Found at i:61326 original size:38 final size:38
Alignment explanation
Indices: 61273--61351 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
61263 ATGTGTTCAA
* *
61273 AGTACTTAAATAATTATTTTAATCTTTAATGTTGAAAT
1 AGTACTAAAAGAATTATTTTAATCTTTAATGTTGAAAT
61311 AGTACTAAAAGAATTATTTTAATCTTTAATGTTGAAAT
1 AGTACTAAAAGAATTATTTTAATCTTTAATGTTGAAAT
61349 AGT
1 AGT
61352 TTTGGTTGGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (38 bp):
AGTACTAAAAGAATTATTTTAATCTTTAATGTTGAAAT
Found at i:62697 original size:12 final size:12
Alignment explanation
Indices: 62680--62705 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
62670 GTTGAGCGAA
62680 TATTGGTAGTGG
1 TATTGGTAGTGG
62692 TATTGGTAGTGG
1 TATTGGTAGTGG
62704 TA
1 TA
62706 GTTGAAGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.42
Consensus pattern (12 bp):
TATTGGTAGTGG
Found at i:63289 original size:200 final size:196
Alignment explanation
Indices: 62946--63470 Score: 689
Period size: 200 Copynumber: 2.6 Consensus size: 196
62936 TGTCCAGAAT
*
62946 ATAAAGTGTCGATACATTTATTAAAAGTATCGATCCCAATAACATCGAAGCCGATAATTATAATG
1 ATAAAGTGTCGATACATTTATTAAAAGTATCGATCCCAA-AACATCGAAACCGATAATTATAATG
* *
63011 TAATAGGTAAATTTACAATGTAACTGATATAAATATACTGGTTTTATAAGAAAATAGGTCAGCAT
65 TAATAGGTAAATTTACAATGT-ACTGATATAAATATAC-AGTTTTATAAGAAAATAGGTCAGAAT
* * * *
63076 AAAGTATCGACACTATTTAAATTTGTGTCGATATTTTTTGTCCATAATGAATGTCAAACGGGGTG
128 AAAGTATCGACACTATTTAAATTTGTGTCGATACTTTTT-TCCAGAATGAATGCCAAACGAGGTG
63141 CACGC
192 CACGC
*
63146 ATAAAGTGTCGATACATTTATTAAAAGTATCGATCCCACAAACATCGAAACCGATAATTACAATG
1 ATAAAGTGTCGATACATTTATTAAAAGTATCGATCCCA-AAACATCGAAACCGATAATTATAATG
* * * *
63211 TGATAGATAAATTTATAATGTACCTGATATAAATATATCAGTTTTATGAGAAAATAGGTCTA-AA
65 TAATAGGTAAATTTACAATGTA-CTGATATAAATATA-CAGTTTTATAAGAAAATAGGTC-AGAA
* * * *
63275 TAATGTATCGACACTTTTTAAGTTTGTGTCGATACTTTTTTCCAGAATGAATGCCCAACGAGGTG
127 TAAAGTATCGACACTATTTAAATTTGTGTCGATACTTTTTTCCAGAATGAATGCCAAACGAGGTG
*
63340 CATGC
192 CACGC
* * * *
63345 ATAAAGTGTCAATACATTTA--AAATTGCATCGATCCAAAAAACATCGAAACCGATAATTATAAT
1 ATAAAGTGTCGATACATTTATTAAA-AGTATCGATCC-CAAAACATCGAAACCGATAATTATAAT
* *
63408 GTAATAGGTAAATTTGCAATGTTACTGGTATAAATATACCAG-TTTACTAAGAAAAATAGGTCA
64 GTAATAGGTAAATTTACAATG-TACTGATATAAATATA-CAGTTTTA-TAAG-AAAATAGGTCA
63471 ATATAAGTGT
Statistics
Matches: 287, Mismatches: 29, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
197 7 0.02
198 70 0.24
199 58 0.20
200 149 0.52
201 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (196 bp):
ATAAAGTGTCGATACATTTATTAAAAGTATCGATCCCAAAACATCGAAACCGATAATTATAATGT
AATAGGTAAATTTACAATGTACTGATATAAATATACAGTTTTATAAGAAAATAGGTCAGAATAAA
GTATCGACACTATTTAAATTTGTGTCGATACTTTTTTCCAGAATGAATGCCAAACGAGGTGCACG
C
Found at i:63605 original size:23 final size:23
Alignment explanation
Indices: 63555--63599 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
63545 TGGCTTTTTT
*
63555 ATTATAGAAGCGCTACCTATTAC
1 ATTATAGAAGCGCTACCTAATAC
*
63578 ATTATATAAGCGCTACCTAATA
1 ATTATAGAAGCGCTACCTAATA
63600 TGTTATTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (23 bp):
ATTATAGAAGCGCTACCTAATAC
Done.