genome.fa.s1289.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001289.1 Hibiscus syriacus cultivar Beakdansim tig00002525_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109021

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311--339	6	4.8	6	100	0	58	48	0	0	51	1.00
716--748	16	2.1	16	94	0	57	60	24	9	6	1.49
806--871	16	4.3	16	83	7	84	59	15	10	15	1.62
814--872	31	1.9	31	92	0	100	55	18	11	13	1.68
1969--2011	13	3.1	14	83	12	54	62	20	11	4	1.46
1963--2016	23	2.3	24	81	9	67	61	20	11	7	1.53
1977--2012	14	2.6	14	86	13	56	58	22	13	5	1.56
8431--8479	20	2.5	20	93	0	80	4	46	6	42	1.47
9582--9670	19	4.3	21	77	12	69	46	6	3	43	1.46
9611--9670	19	3.1	19	85	2	84	46	8	0	45	1.33
9663--9712	20	2.3	21	83	13	66	42	8	2	48	1.44
9664--9715	19	2.6	21	79	14	65	42	9	1	46	1.47
9713--9746	17	2.1	16	88	5	50	44	11	0	44	1.40
9692--9776	37	2.2	37	85	10	107	44	8	0	47	1.33
12868--12980	9	12.9	9	72	16	51	75	0	8	15	1.09
12879--12984	5	22.2	5	74	16	66	76	0	7	15	1.05
12943--13070	4	30.8	4	68	22	61	69	3	4	22	1.21
12943--12984	13	3.2	13	100	0	84	78	0	0	21	0.75
12897--13148	9	27.9	9	69	18	84	69	1	6	22	1.23
13101--13183	6	13.8	6	75	15	50	63	1	3	31	1.19
13102--13183	32	2.7	31	82	14	84	63	1	3	31	1.19
13101--13183	38	2.2	38	82	6	98	63	1	3	31	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13230--13492	21	12.0	21	67	20	62	63	1	2	31	1.17
13233--13308	22	3.3	22	75	12	73	69	0	1	28	0.96
13220--13308	41	2.0	46	81	12	107	70	0	2	26	0.99
13429--13495	3	22.3	3	90	6	109	68	0	1	29	0.98
15392--15417	10	2.6	10	100	0	52	34	0	0	65	0.93
15394--15426	15	2.1	16	88	5	50	30	0	0	69	0.88
15666--15725	29	2.1	29	87	6	86	25	5	5	65	1.34
15717--15815	35	3.0	33	80	15	116	41	5	1	52	1.30
15783--15847	29	2.2	30	86	5	87	36	9	0	53	1.33
15727--15824	32	3.0	32	79	16	94	40	5	1	53	1.30
16002--16061	29	2.1	29	87	9	88	66	3	1	28	1.17
16211--16271	30	2.0	30	93	0	104	16	26	13	44	1.84
19355--19429	29	2.6	29	93	0	123	53	9	8	29	1.61
19448--19516	22	3.1	22	89	2	102	37	1	1	59	1.15
20723--20754	5	6.4	5	100	0	64	18	62	18	0	1.33
20822--20871	22	2.3	22	85	0	64	20	24	26	30	1.98
25551--25625	29	2.6	29	93	0	123	53	9	8	29	1.61
25646--25735	22	4.0	22	85	8	119	37	0	2	60	1.09
31915--31954	21	1.9	21	89	0	62	10	25	40	25	1.86
31937--31997	20	2.9	21	85	7	79	21	26	31	21	1.98
38351--38480	66	2.0	66	81	3	154	21	21	20	36	1.96
40088--40132	15	2.8	16	80	6	56	33	31	24	11	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40880--40974	43	2.2	43	79	3	102	26	14	25	33	1.94
41361--41425	12	5.7	12	71	20	50	1	36	20	41	1.61
41379--41427	21	2.3	21	89	0	71	2	36	20	40	1.64
49514--49962	147	3.0	146	84	3	544	34	16	14	33	1.90
49574--50029	148	3.1	148	84	4	546	35	18	14	31	1.91
52099--52127	12	2.3	13	94	5	51	44	34	13	6	1.71
55004--55067	31	2.0	32	84	3	85	54	3	9	32	1.48
56260--56347	38	2.3	38	88	7	135	36	38	11	13	1.81
58953--59030	40	2.0	40	92	0	129	23	17	29	29	1.97
58958--59030	18	3.8	18	76	13	74	21	17	31	28	1.97
62166--62192	2	13.5	2	100	0	54	48	0	0	51	1.00
69025--69059	13	2.7	13	86	0	52	11	25	0	62	1.28
71664--71706	20	2.2	20	86	0	59	30	13	20	34	1.92
75960--76745	110	7.2	110	92	1	1287	34	23	17	23	1.96
76687--76788	43	2.4	43	96	0	186	42	25	16	15	1.88
76575--76898	153	2.1	153	92	0	540	37	24	16	21	1.93
76465--76984	263	2.0	259	91	1	842	36	24	17	22	1.95
76728--76984	110	2.4	106	88	2	370	36	24	17	22	1.94
77027--77610	84	7.0	83	77	4	521	31	24	19	24	1.98
77067--77525	165	2.8	164	80	3	549	30	23	20	25	1.98
77065--77610	169	3.3	167	81	2	614	31	24	19	24	1.98
77953--78001	10	5.1	10	79	20	52	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77951--78002	23	2.3	23	87	12	72	30	0	0	69	0.89
84389--84426	19	2.0	19	89	0	58	21	36	26	15	1.93
88210--88236	12	2.2	12	100	0	54	37	7	0	55	1.28
89183--89230	20	2.4	20	76	13	53	41	8	0	50	1.33
91755--91830	28	2.8	28	95	2	136	38	6	1	53	1.35
93293--93437	76	1.9	75	92	4	247	46	4	9	40	1.56
94849--94907	30	2.0	30	100	0	118	33	11	3	50	1.56
96100--96153	26	2.1	26	96	0	99	44	7	14	33	1.73
96261--96410	56	2.7	56	88	0	219	28	10	11	50	1.70
100700--100790	31	2.9	31	75	12	96	46	12	7	34	1.70
105842--105875	17	2.0	17	100	0	68	35	11	35	17	1.87
107709--107909	65	3.1	65	80	11	234	27	17	23	30	1.97

Tables:   1

The End!