genome.fa.s129.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000129.1 Hibiscus syriacus cultivar Beakdansim tig00000233_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121663

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--63	30	2.1	29	91	5	99	42	7	6	42	1.59
27--210	35	5.1	36	80	15	134	46	5	4	43	1.46
5--209	36	6.0	31	78	17	171	45	5	4	43	1.47
82--273	32	5.5	36	73	16	156	45	2	5	45	1.41
289--330	13	3.2	13	83	16	50	19	2	0	78	0.86
1662--1741	2	40.0	2	97	0	151	50	0	1	48	1.08
9935--10001	29	2.4	28	80	9	66	19	5	1	73	1.12
19049--19088	20	1.9	22	85	10	57	62	5	5	27	1.37
22308--22336	6	4.8	6	100	0	58	34	0	0	65	0.93
24334--24416	16	5.2	16	76	5	87	40	32	12	14	1.83
24345--24402	19	3.4	19	68	26	65	39	34	13	12	1.82
24338--24416	32	2.5	32	93	0	140	40	32	11	15	1.83
33693--33727	18	1.9	18	88	11	54	28	28	22	20	1.98
39234--39279	25	1.9	24	82	8	58	58	23	2	15	1.48
47285--47343	21	2.6	22	86	7	75	32	0	3	64	1.10
49067--49134	33	2.1	33	91	0	109	17	44	17	20	1.87
52991--53050	24	2.6	23	73	19	61	50	10	1	38	1.46
53964--54010	25	1.9	25	91	4	78	42	2	0	55	1.12
59318--59349	14	2.3	14	94	0	55	56	18	15	9	1.66
59368--59438	24	3.0	24	81	4	81	56	16	12	14	1.68
59332--59438	20	4.7	22	70	19	78	56	15	14	14	1.68
59763--59825	26	2.5	24	87	5	81	20	14	11	53	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59786--59829	14	3.4	14	73	23	51	18	11	11	59	1.61
60301--60347	14	3.4	14	87	0	58	59	17	10	12	1.60
75145--75174	15	2.0	15	100	0	60	13	46	26	13	1.80
78175--78210	17	2.1	17	89	0	54	30	2	8	58	1.42
78961--79003	17	2.5	17	85	7	52	55	2	0	41	1.12
78963--79006	18	2.4	18	81	11	54	54	2	0	43	1.12
78939--79005	28	2.5	28	80	7	77	55	1	0	43	1.09
78943--79005	27	2.4	27	79	10	76	55	1	0	42	1.09
80008--80069	26	2.4	25	81	7	70	41	0	3	54	1.16
80535--80573	17	2.3	17	91	8	62	66	0	0	33	0.92
80714--80754	21	2.0	21	85	9	57	43	0	2	53	1.13
82961--82986	2	13.0	2	100	0	52	50	0	0	50	1.00
98245--98297	22	2.4	22	100	0	106	16	18	28	35	1.93
98534--98567	6	6.0	6	96	3	54	0	17	52	29	1.45
98634--98708	22	3.5	22	71	10	75	40	25	16	18	1.91
98641--98724	41	2.0	42	84	11	111	41	23	17	16	1.89
98697--98806	41	2.7	41	95	0	193	36	23	17	22	1.95
98741--98874	61	2.2	61	90	2	207	38	22	19	20	1.94
98782--98826	20	2.2	20	88	7	65	44	24	20	11	1.83
98802--98898	41	2.4	41	87	0	131	37	21	18	22	1.95
98830--98895	21	3.2	21	65	4	53	34	22	18	24	1.96
98700--98886	102	1.8	101	90	6	306	36	22	18	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101105--101152	20	2.4	20	100	0	96	56	0	4	39	1.19
112245--112278	12	2.8	12	95	0	59	32	0	32	35	1.58
112926--112994	34	2.0	33	81	10	77	56	0	0	43	0.99
112971--113017	23	2.0	23	91	0	76	53	0	0	46	1.00
113035--113080	12	3.9	12	88	2	67	32	50	8	8	1.64
116028--116067	21	1.9	21	90	10	64	30	5	7	57	1.48
118688--118725	15	2.6	14	84	15	58	50	31	0	18	1.47
120601--120665	21	3.0	22	81	6	69	21	24	30	23	1.99

Tables:   1

The End!