genome.fa.s1290.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001290.1 Hibiscus syriacus cultivar Beakdansim tig00002526_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84363

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7155--7192	20	1.9	20	94	0	67	26	31	26	15	1.96
7198--7237	21	1.9	21	89	0	62	25	40	25	10	1.86
7157--7243	21	4.2	20	72	13	59	22	33	27	16	1.95
8398--8435	20	1.9	20	94	0	67	26	31	26	15	1.96
8441--8480	21	1.9	21	89	0	62	25	40	25	10	1.86
11831--12001	63	2.7	64	77	9	197	30	12	15	41	1.84
12228--12742	132	3.9	131	80	3	514	26	31	15	26	1.96
12425--12533	43	2.6	41	83	12	134	23	33	18	23	1.96
12696--12798	41	2.5	41	77	1	118	24	31	16	28	1.96
14505--14572	35	2.0	34	86	13	95	25	7	13	54	1.64
14614--14822	30	7.0	30	76	5	199	21	13	7	57	1.60
17218--17245	3	9.3	3	100	0	56	67	32	0	0	0.91
25724--25861	53	2.6	53	82	3	143	42	18	7	31	1.79
25865--25906	2	21.0	2	90	0	57	47	0	0	52	1.00
25859--25897	12	3.2	12	85	0	51	41	0	0	58	0.98
40669--40977	135	2.3	129	81	8	336	27	29	17	25	1.98
40900--41003	40	2.5	40	78	4	109	25	31	16	26	1.96
41178--41212	10	3.6	10	92	3	54	37	2	0	60	1.12
41178--41218	13	3.2	13	83	10	57	36	2	0	60	1.10
46575--46624	26	1.9	26	91	0	82	18	8	4	70	1.28
47792--47859	34	2.0	34	94	0	118	25	8	7	58	1.54
48643--48694	20	2.6	20	84	0	77	36	7	26	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49863--49960	21	4.7	21	78	2	108	25	15	24	34	1.94
49951--50062	22	5.3	22	71	8	81	19	17	22	40	1.92
49970--50018	19	2.5	20	83	6	73	18	18	16	46	1.84
49928--50046	19	5.8	19	72	17	53	22	17	21	37	1.94
50158--50250	6	15.7	6	98	1	179	32	50	17	0	1.46
50865--50917	22	2.4	22	93	0	97	37	28	16	16	1.91
50929--50982	21	2.6	21	100	0	108	29	29	16	24	1.97
50906--50990	21	4.1	21	81	4	84	36	28	16	18	1.93
55021--55068	21	2.3	20	82	6	60	31	18	16	33	1.94
55229--55271	22	2.0	22	95	0	77	23	39	13	23	1.90
55667--55712	20	2.3	20	84	0	65	15	17	21	45	1.85
57428--57547	63	1.9	62	81	6	143	22	13	32	31	1.92
57844--57962	21	5.7	21	81	7	134	21	36	18	23	1.95
57844--57962	42	2.8	42	89	0	175	21	36	18	23	1.95
59261--59418	64	2.5	64	95	1	280	30	1	17	50	1.56
59520--59570	19	2.6	20	90	3	77	37	23	17	21	1.94
59566--59601	14	2.6	15	83	16	51	5	19	27	47	1.72
59638--59681	20	2.2	20	91	0	70	15	20	22	40	1.90
59927--59962	18	2.0	18	94	0	63	19	2	22	55	1.56
63242--63335	41	2.3	40	78	15	104	21	17	21	40	1.91
63262--63329	20	3.3	20	95	2	118	22	19	22	36	1.95
66344--66418	29	2.6	29	91	2	114	34	10	33	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68399--68431	2	16.5	2	100	0	66	48	0	0	51	1.00
68816--68862	25	1.9	25	83	12	62	59	2	2	36	1.21

Tables:   1

The End!