Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001291.1 Hibiscus syriacus cultivar Beakdansim tig00002527_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115585
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:262 original size:42 final size:43
Alignment explanation
Indices: 200--352 Score: 171
Period size: 42 Copynumber: 3.7 Consensus size: 43
190 AAATTTCTAT
*
200 CATTTA-TCC-TAAGCTCGTAAGTTTATTTTACCA-ATACTAC
1 CATTTATTCCATAAGCTCGTAAGCTTATTTTACCATATACTAC
* *
240 CATTTATTCCATAAGCTTGTAAGCTTATTTTACCAATATATTTAC
1 CATTTATTCCATAAGCTCGTAAGCTTATTTTACC-ATATA-CTAC
*
285 CATTTATCCCATAAG-TCGT-AGCTTATTTTACCATATACTTAC
1 CATTTATTCCATAAGCTCGTAAGCTTATTTTACCATATAC-TAC
*
327 CA--TATTCTATAAGCTCGT-AGC-TATTT
1 CATTTATTCCATAAGCTCGTAAGCTTATTT
353 GCATGGTTAC
Statistics
Matches: 98, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
40 20 0.20
41 10 0.10
42 31 0.32
43 14 0.14
44 6 0.06
45 17 0.17
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (43 bp):
CATTTATTCCATAAGCTCGTAAGCTTATTTTACCATATACTAC
Found at i:2444 original size:30 final size:29
Alignment explanation
Indices: 2382--2446 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
2372 ACCCATTTGT
* *
2382 AACTTTTTAAAATTATATTTTAGTCCTTA
1 AACTTTTTAAAATTATACTTTAGTCCTCA
*
2411 AACTTTTTAAAGTTTATACTTTAGTCAC-CA
1 AACTTTTTAAA-ATTATACTTTAGTC-CTCA
2441 AACTTT
1 AACTTT
2447 ACCAAATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 11 0.35
30 19 0.61
31 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.05, T:0.48
Consensus pattern (29 bp):
AACTTTTTAAAATTATACTTTAGTCCTCA
Found at i:5838 original size:9 final size:9
Alignment explanation
Indices: 5826--5867 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
5816 ATAATGATGA
*
5826 TAATTATAT
1 TAATAATAT
5835 TAATAATAT
1 TAATAATAT
*
5844 TAAT-ATAA
1 TAATAATAT
5852 TAATAATAT
1 TAATAATAT
5861 TAA-AATA
1 TAATAATA
5868 AAATCAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
8 11 0.38
9 18 0.62
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
TAATAATAT
Found at i:5855 original size:17 final size:17
Alignment explanation
Indices: 5830--5868 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
5820 TGATGATAAT
*
5830 TATATTAATAATATTAA
1 TATAATAATAATATTAA
5847 TATAATAATAATATTAA
1 TATAATAATAATATTAA
*
5864 AATAA
1 TATAA
5869 AATCAGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TATAATAATAATATTAA
Found at i:7273 original size:22 final size:21
Alignment explanation
Indices: 7215--7282 Score: 57
Period size: 22 Copynumber: 3.2 Consensus size: 21
7205 GTCAGATTAT
*
7215 AAAATAAAA-ATAAATATGAA
1 AAAATAAAATAAAAATATGAA
* * * *
7235 AAAATATATTAATAATATTAA
1 AAAATAAAATAAAAATATGAA
**
7256 AATAATAAAATAAAAATAACAA
1 AA-AATAAAATAAAAATATGAA
7278 AAAAT
1 AAAAT
7283 GATAACCATA
Statistics
Matches: 36, Mismatches: 10, Indels: 3
0.73 0.20 0.06
Matches are distributed among these distances:
20 7 0.19
21 13 0.36
22 16 0.44
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (21 bp):
AAAATAAAATAAAAATATGAA
Found at i:8590 original size:14 final size:14
Alignment explanation
Indices: 8573--8634 Score: 54
Period size: 14 Copynumber: 4.2 Consensus size: 14
8563 CCTGCAAAAA
*
8573 ATAATATTAATAAT
1 ATAATAATAATAAT
8587 ATAATAATAATAAT
1 ATAATAATAATAAT
*
8601 -TAATAACAAATAATT
1 ATAATAA-TAATAA-T
*
8616 ATTATAATATATATAT
1 ATAATAATA-ATA-AT
8632 ATA
1 ATA
8635 TATATATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
13 6 0.16
14 18 0.47
15 2 0.05
16 11 0.29
17 1 0.03
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:8629 original size:2 final size:2
Alignment explanation
Indices: 8618--8665 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
8608 AAATAATTAT
8618 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8659 TA TA TA T
1 TA TA TA T
8666 TAAGTTCGGT
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9072 original size:37 final size:37
Alignment explanation
Indices: 9022--9178 Score: 154
Period size: 37 Copynumber: 4.1 Consensus size: 37
9012 AAAGGTTTTT
9022 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTG
* **
9059 TTTCAAGAGAAACTATCTCAAGAGAGACAAAACTTAA
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTG
* * * * *
9096 TTCCAAAAGAAACTGTCTCAAGGGAAATATATTCAAAGATTTTG
1 TTTCAAGAGAAACTGTCTCAA--G--AGAGA--CAAA-ACTTTG
* *
9140 TTTCAAGGGAAGCTGTCTCAAGAGAGAC-AAACTTTG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTG
9176 TTT
1 TTT
9179 TGAGGAAATT
Statistics
Matches: 95, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
36 8 0.08
37 54 0.57
38 1 0.01
39 1 0.01
40 3 0.03
41 3 0.03
42 1 0.01
43 4 0.04
44 20 0.21
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (37 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTTG
Found at i:9755 original size:43 final size:43
Alignment explanation
Indices: 9694--9815 Score: 244
Period size: 43 Copynumber: 2.8 Consensus size: 43
9684 ATCAAATGGC
9694 ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATGTGTGTGT
1 ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATGTGTGTGT
9737 ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATGTGTGTGT
1 ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATGTGTGTGT
9780 ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATG
1 ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATG
9816 ATCCCTTCGT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 79 1.00
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (43 bp):
ACGATATCCTCCGTCGTGGAGTTGAAATCGTGGATGTGTGTGT
Found at i:13831 original size:22 final size:21
Alignment explanation
Indices: 13773--13843 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
13763 GTCAGATTAT
*
13773 AAAATAAAA-ATAAATATGAA
1 AAAATAAAATAAAAATATGAA
* * * *
13793 AAAATATATTAATAATATTAA
1 AAAATAAAATAAAAATATGAA
**
13814 AATAATAAAATAAAAATAACAA
1 AA-AATAAAATAAAAATATGAA
13836 AAAATAAA
1 AAAATAAA
13844 TACCACATAC
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
20 7 0.18
21 16 0.41
22 16 0.41
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.24
Consensus pattern (21 bp):
AAAATAAAATAAAAATATGAA
Found at i:15917 original size:126 final size:126
Alignment explanation
Indices: 15654--15884 Score: 340
Period size: 126 Copynumber: 1.8 Consensus size: 126
15644 TTTAATATAG
*
15654 TAAGATATTTATTTATTCAAAAATATCAGAAAAGAGCTTCTAGGTACCTTAAGACAGCTCTTTTC
1 TAAGAAATTTATTTATTCAAAAATATCAGAAAAGAGCTTCTAGGTACCTTAAGACAGCTCTTTTC
* * * * *
15719 TTTGATATTGAAAAATAAATAAATAACCAAAATATTTTCTTAAAATAAAAATTTATTTTAA
66 TTCGATATTGAAAAATAAATAAATAACCAAAATATATTATTAAAATAAAAAGTAATTTTAA
* * * *
15780 TAAGATATTTATTTATTTAAAAATATCAGAAAAGGGCTTCTAGGTGCCTTAAGACAGCTCTTTTC
1 TAAGAAATTTATTTATTCAAAAATATCAGAAAAGAGCTTCTAGGTACCTTAAGACAGCTCTTTTC
*
15845 TTCGATATT-AAAAATAAATAAAT-ATCAAAATATGATTATT
66 TTCGATATTGAAAAATAAATAAATAACCAAAATAT-ATTATT
15885 TTTCTTAAAA
Statistics
Matches: 97, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
124 9 0.09
125 18 0.19
126 70 0.72
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (126 bp):
TAAGAAATTTATTTATTCAAAAATATCAGAAAAGAGCTTCTAGGTACCTTAAGACAGCTCTTTTC
TTCGATATTGAAAAATAAATAAATAACCAAAATATATTATTAAAATAAAAAGTAATTTTAA
Found at i:16913 original size:13 final size:13
Alignment explanation
Indices: 16897--16922 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16887 TTGTTGGTCG
16897 TCGTTGCTTGCTC
1 TCGTTGCTTGCTC
16910 TCGTTGCTTGCTC
1 TCGTTGCTTGCTC
16923 GTGGTTTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.23, T:0.46
Consensus pattern (13 bp):
TCGTTGCTTGCTC
Found at i:17734 original size:123 final size:122
Alignment explanation
Indices: 17418--18230 Score: 685
Period size: 113 Copynumber: 6.9 Consensus size: 122
17408 AGGTTGAACA
* * * * * * * *
17418 TTGATGTTGCTCTATATCATTCTACGATAAAGTCAAACAAAATGTTGAATAAGTTCTTCTCATTA
1 TTGATGTTGATCTATCTCCTTCTGCGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTA
* *
17483 CGAACTTCTTC-T--TCTTCAGATGAGTTCTTCTCATTATGAACTTATTCTGGCAAA-G
66 TGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTT-CTCTGG-AAATG
* * * *
17538 TTGATGTTGATCTA---CCTTATGTGATAGAATCAAGCAAAAGATTGAACAAGTTCTTCTCATTA
1 TTGATGTTGATCTATCTCCTTCTGCGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTA
*
17600 TGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAGCTGTCTCTGGAAATG
66 TGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACT-TCTCTGGAAATG
* *
17658 TTGATGTTGATCTATCTCCTTCTGCGATAGAGTCGAGCAAAAGGTTGAACAAGCTCTTCTCATTA
1 TTGATGTTGATCTATCTCCTTCTGCGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTA
*
17723 TAAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATG
66 TGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAAC-TTCTCTGGAAATG
* * * *
17781 TTGATGCTGATCTATCTCCTTCTG-GATAGAGTCGAGCAAAAGGTTTAACAAGTTCTTCTTATTA
1 TTGATGTTGATCTATCTCCTTCTGCGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTA
* * *
17845 TGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTCTATCTGG-CA--
66 TGAACTTCTTCTTC-CTCTTCAGATGAGTTCTTCTCATTATGAACT-TCTCTGGAAATG
* *** *
17901 ---ATGTTGATCCA--T-CGAAT--GAT-GAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATT
1 TTGATGTTGATCTATCTCCTTCTGCGATAG-AGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATT
* *
17957 ATGAACTTTTTCTTCCTTCTTCAGAGGAGTTCTTCTCATTATGAACTT-TACCT-----TCG
65 ATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCATTATGAACTTCT--CTGGAAAT-G
* * * *** *
18013 -TAATGCTGATCCA--T-CGAAT--GAT-GAATTCAAGCGAAAA-GTTGAACAAGTTCTTCTCAT
1 TTGATGTTGATCTATCTCCTTCTGCGATAG-AGTCAAGC-AAAAGGTTGAACAAGTTCTTCTCAT
**
18070 TATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA---CTC--GACCTAG
64 TATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAT-G
* * * *** *
18126 -TAATGCTGATCCA--T-CGAAT--GAT-GAATTCAAGCGAAAA-GTTGAACAAGTTCTTCTCAT
1 TTGATGTTGATCTATCTCCTTCTGCGATAG-AGTCAAGC-AAAAGGTTGAACAAGTTCTTCTCAT
* *
18183 TATGAACTTCTTCTTCCTTCTTCAGATGAGTTTTTATCATTATGAACT
64 TATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCATTATGAACT
18231 CCTTCTTCCT
Statistics
Matches: 617, Mismatches: 48, Indels: 61
0.85 0.07 0.08
Matches are distributed among these distances:
110 1 0.00
111 1 0.00
112 3 0.00
113 181 0.29
114 95 0.15
115 5 0.01
117 57 0.09
118 1 0.00
119 3 0.00
120 62 0.10
121 1 0.00
122 52 0.08
123 154 0.25
124 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (122 bp):
TTGATGTTGATCTATCTCCTTCTGCGATAGAGTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTA
TGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAATG
Found at i:18070 original size:114 final size:114
Alignment explanation
Indices: 17696--18231 Score: 690
Period size: 113 Copynumber: 4.6 Consensus size: 114
17686 AGAGTCGAGC
* *
17696 AAAAGGTTGAACAAGCTCTTCTCATTATAAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * *** * *
17760 TATGAACT-TTCTCTGGAAATGTTGATGCTGATCTATCTCCTTCTGGAT-AGAGTCGAGC-
66 TATGAACTCTAC-CT----A-G-TAATGCTGATCCA--T-CGAAT-GATGA-ATTCAAGCG
* * *
17818 AAAAGGTTTAACAAGTTCTTCTTATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * *
17883 TATGAACTCTATCTGGCAATGTTGATCCATCGAATGATGAATTCAAGC-
66 TATGAACTCTACCTAGTAATGCTGATCCATCGAATGATGAATTCAAGCG
* *
17931 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGAGGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
17996 TATGAACTTTACCTTCGTAATGCTGATCCATCGAATGATGAATTCAAGCG
66 TATGAACTCTACC-TAGTAATGCTGATCCATCGAATGATGAATTCAAGCG
18046 AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
18110 TATGAACTCGACCTAGTAATGCTGATCCATCGAATGATGAATTCAAGCG
66 TATGAACTCTACCTAGTAATGCTGATCCATCGAATGATGAATTCAAGCG
* *
18159 AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTTTTATCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
18223 TATGAACTC
66 TATGAACTC
18232 CTTCTTCCTT
Statistics
Matches: 375, Mismatches: 34, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
113 186 0.50
114 104 0.28
115 5 0.01
117 9 0.02
118 1 0.00
122 37 0.10
123 32 0.09
124 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (114 bp):
AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTCTACCTAGTAATGCTGATCCATCGAATGATGAATTCAAGCG
Found at i:18096 original size:227 final size:228
Alignment explanation
Indices: 17450--18230 Score: 789
Period size: 227 Copynumber: 3.3 Consensus size: 228
17440 TACGATAAAG
* * * *
17450 TCAAACAAAATGTTGAATAAGTTCTTCTCATTACGAA---CTTCTT-CTTCTTCAGATGAGTTCT
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* * * * * ** *
17511 TCTCATTATGAACTTATTCTGGCAAAGTTGATGTTGATCTAC-CTTATGTGATAGAATCAAGCAA
66 TCTCATTATGAAC-T-TTCT--CTATGTTAATGCTGATCCACTCCGA-ATGAT-GAATCAAGCAA
17575 AAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCATTA
125 AAG-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
* * * * *** *
17639 TGAGCTGTCTCTGGAAATGTTGATGTTGATCTATCTCCTTCTGCGAT-AGAG
189 TGAACTCTATCTGG-AA-----ATGTTGATCCA--T-CGAAT--GATGA-AT
* * *
17690 TCGAGCAAAAGGTTGAACAAGCTCTTCTCATTATAAACTTCTTCTTCC-TCTTCAGATGAGTTCT
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* * *** * *
17754 TCTCATTATGAACTTTCTCTGGAAATGTTGATGCTGATCTATCTCCTTCTGGATAGAGTCGAGCA
66 TCTCATTATGAACTTTCTCT----ATGTTAATGCTGATCCA-CTCCGAAT-GAT-GAATCAAGCA
* * *
17819 AAAGGTTTAACAAGTTCTTCTTATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
124 AAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
17884 ATGAACTCTATCTGGCAATGTTGATCCATCGAATGATGAAT
188 ATGAACTCTATCTGGAAATGTTGATCCATCGAATGATGAAT
* *
17925 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGAGGAGTTCT
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
17990 TCTCATTATGAACTTTAC-CT-TCG-TAATGCTGATCCA-T-CGAATGATGAATTCAAGCGAAAA
66 TCTCATTATGAACTTT-CTCTAT-GTTAATGCTGATCCACTCCGAATGATGAA-TCAAGC-AAAA
18050 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
127 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
* * * * *
18115 ACTCGACCTAGTAATGCTGATCCATCGAATGATGAAT
192 ACTCTATCTGGAAATGTTGATCCATCGAATGATGAAT
*
18152 TCAAGCGAAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTT
1 TCAAGC-AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTC
*
18216 TTATCATTATGAACT
65 TTCTCATTATGAACT
18231 CCTTCTTCCT
Statistics
Matches: 470, Mismatches: 51, Indels: 53
0.82 0.09 0.09
Matches are distributed among these distances:
226 2 0.00
227 172 0.37
228 10 0.02
229 1 0.00
231 12 0.03
232 1 0.00
235 48 0.10
236 34 0.07
237 3 0.01
238 1 0.00
239 1 0.00
240 40 0.09
241 4 0.01
242 1 0.00
243 50 0.11
244 3 0.01
245 51 0.11
246 36 0.08
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (228 bp):
TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
TCTCATTATGAACTTTCTCTATGTTAATGCTGATCCACTCCGAATGATGAATCAAGCAAAAGTTG
AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
TATCTGGAAATGTTGATCCATCGAATGATGAAT
Found at i:18223 original size:40 final size:40
Alignment explanation
Indices: 18171--18271 Score: 166
Period size: 40 Copynumber: 2.5 Consensus size: 40
18161 AAGTTGAACA
* *
18171 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
1 AGTTCTTATCATTATGAACTCCTTCTTCCTTCTTCAGATG
*
18211 AGTTTTTATCATTATGAACTCCTTCTTCCTTCTTCAGATG
1 AGTTCTTATCATTATGAACTCCTTCTTCCTTCTTCAGATG
*
18251 AGTTCTTCTCATTATGAACTC
1 AGTTCTTATCATTATGAACTC
18272 GACCAGGTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.47
Consensus pattern (40 bp):
AGTTCTTATCATTATGAACTCCTTCTTCCTTCTTCAGATG
Found at i:18246 original size:153 final size:153
Alignment explanation
Indices: 18058--18384 Score: 575
Period size: 153 Copynumber: 2.1 Consensus size: 153
18048 AAGTTGAACA
* *
18058 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
1 AGTTCTTATCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
18123 TA-GTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATG
66 -AGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATG
*
18187 AACTTCTTCTTCCTTCTTCAGATG
130 AACATCTTCTTCCTTCTTCAGATG
*
18211 AGTTTTTATCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
1 AGTTCTTATCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
* *
18276 AGGTAATGGTGATCCATCGAATGATGAATTCAAGTGAAAAGTTGAACAAGTTCTTCTCATTATGA
66 AGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
18341 ACATCTTCTTCCTTCTTCAGATG
131 ACATCTTCTTCCTTCTTCAGATG
*
18364 AGTTCTTCTCATTATGAACTC
1 AGTTCTTATCATTATGAACTC
18385 TACCTGGAAA
Statistics
Matches: 165, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
152 1 0.01
153 164 0.99
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (153 bp):
AGTTCTTATCATTATGAACTCCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACC
AGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGA
ACATCTTCTTCCTTCTTCAGATG
Found at i:18538 original size:76 final size:76
Alignment explanation
Indices: 18452--18593 Score: 248
Period size: 76 Copynumber: 1.9 Consensus size: 76
18442 ACTCGAAGGT
* * *
18452 TTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTATAGAT
1 TTTGAAAACATCAAAAAGCTCCCAAAGGATTTTTGGAAACATCATACACTGTAGGACTTACAGAT
18517 GACCCTAAAGC
66 GACCCTAAAGC
*
18528 TTTGAAAACATCAAAAAGCTCCCGAAGGATTTTTGGAAACATCATACACTGTAGGACTTACAGAT
1 TTTGAAAACATCAAAAAGCTCCCAAAGGATTTTTGGAAACATCATACACTGTAGGACTTACAGAT
18593 G
66 G
18594 TGGGAAATAG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 62 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (76 bp):
TTTGAAAACATCAAAAAGCTCCCAAAGGATTTTTGGAAACATCATACACTGTAGGACTTACAGAT
GACCCTAAAGC
Found at i:19300 original size:22 final size:22
Alignment explanation
Indices: 19275--19325 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
19265 AAGCTTTCAA
*
19275 CTTTGAAAATAGAATCTATCAT
1 CTTTGAAAAGAGAATCTATCAT
*
19297 CTTTAAAAAGAGAATCTATCAT
1 CTTTGAAAAGAGAATCTATCAT
19319 CTTTGAA
1 CTTTGAA
19326 GAGTGTAGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (22 bp):
CTTTGAAAAGAGAATCTATCAT
Found at i:22006 original size:114 final size:114
Alignment explanation
Indices: 21806--22025 Score: 377
Period size: 114 Copynumber: 1.9 Consensus size: 114
21796 GATCATGCAG
* * *
21806 TTCATCTTTCAATTCCAATGATTGGTTCTGGGGTTCCTACCGAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
21871 ACACTTCCAGAAAATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAAATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
* * *
21920 TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAGATAACTTAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
*
21985 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTA
66 ACACTTCCAGAAAATGCTATTGGGTCTCCTTATTTCTACTA
22026 CGAGAACGTG
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
114 99 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAAATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
Found at i:26207 original size:20 final size:20
Alignment explanation
Indices: 26184--26222 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26174 CGAACGTAAA
*
26184 AATGCAAATATAAAAATGTG
1 AATGCAAACATAAAAATGTG
* *
26204 AATGTAACCATAAAAATGT
1 AATGCAAACATAAAAATGT
26223 AAATTGTGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.54, C:0.08, G:0.13, T:0.26
Consensus pattern (20 bp):
AATGCAAACATAAAAATGTG
Found at i:28808 original size:18 final size:18
Alignment explanation
Indices: 28785--28823 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
28775 ACGAATAAAA
*
28785 ATATTTTTATATAAATGT
1 ATATTTATATATAAATGT
* *
28803 ATATTTATATTTAGATGT
1 ATATTTATATATAAATGT
28821 ATA
1 ATA
28824 AATAAAAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (18 bp):
ATATTTATATATAAATGT
Found at i:28886 original size:16 final size:18
Alignment explanation
Indices: 28854--28887 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
28844 TATTAATGTA
28854 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
28872 TGAAT-ATTT-TATTTTT
1 TGAATCATTTATATTTTT
28888 AATACAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:30971 original size:130 final size:131
Alignment explanation
Indices: 30736--30984 Score: 383
Period size: 130 Copynumber: 1.9 Consensus size: 131
30726 AATTTTCTTC
* *
30736 TAATTAGGTGGTGACATGTGTCACCAATAACATATATCATGATCATGTGTTTAACACATGTCAGA
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGTCTAACACATGTCAGA
** * * *
30801 TCCTGGTTCAATGATTAATTTATTTAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAA
66 TCCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAA
30866 A
131 A
* * * *
30867 TAATTAGGTGGTGACATGTGTCACCATTGACACGTGTCATGATCATGTG-CTAACACATGTCAGA
1 TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGTCTAACACATGTCAGA
*
30931 TCCTAATTAAATGATTAGTTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
66 TCCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGAT
30985 TATATAAATA
Statistics
Matches: 106, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
130 62 0.58
131 44 0.42
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (131 bp):
TAATTAGGTGGTGACATGTGTCACCAATAACACATATCATGATCATGTGTCTAACACATGTCAGA
TCCTAATTAAATGATTAATTTATTAAATTCTATTTAATTTAGGACCAAATTGATAGCATATATAA
A
Found at i:31432 original size:35 final size:35
Alignment explanation
Indices: 31382--31457 Score: 134
Period size: 35 Copynumber: 2.2 Consensus size: 35
31372 AATTGAATTT
*
31382 AATTGAATTATTTTGGAAATTAGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
*
31417 AATTGAATTACTTTGGAAATTGGGGTTTAGAATGA
1 AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
31452 AATTGA
1 AATTGA
31458 GGACTGTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.37, C:0.01, G:0.24, T:0.38
Consensus pattern (35 bp):
AATTGAATTACTTTGGAAATTAGGGTTTAGAATGA
Found at i:32129 original size:27 final size:26
Alignment explanation
Indices: 32086--32143 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
32076 TAATGATAAT
32086 TAAATATATGAACATAATATATAAAA
1 TAAATATATGAACATAATATATAAAA
* * *
32112 GTAAATATGATTAA-ATAATGTTTAAAA
1 -TAAATAT-ATGAACATAATATATAAAA
32139 TAAAT
1 TAAAT
32144 TAAAACATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 5 0.19
27 18 0.67
28 4 0.15
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (26 bp):
TAAATATATGAACATAATATATAAAA
Found at i:33291 original size:9 final size:9
Alignment explanation
Indices: 33279--33319 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
33269 AACCTGTAAA
33279 AATAATATT
1 AATAATATT
*
33288 AATAGTATT
1 AATAATATT
33297 AATAATA-T
1 AATAATATT
33305 AATAATAATT
1 AATAAT-ATT
33315 AATAA
1 AATAA
33320 AAATAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 7 0.25
9 15 0.54
10 6 0.21
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (9 bp):
AATAATATT
Found at i:33302 original size:18 final size:18
Alignment explanation
Indices: 33279--33339 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 18
33269 AACCTGTAAA
*
33279 AATAATATTAATAGT-ATT
1 AATAATA-TAATAATAATT
33297 AATAATATAATAATAATT
1 AATAATATAATAATAATT
*
33315 AATAA-A-AATAATTA-T
1 AATAATATAATAATAATT
33330 AATATATATA
1 AATA-ATATA
33340 TATATATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
15 5 0.14
16 8 0.22
17 8 0.22
18 16 0.43
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
AATAATATAATAATAATT
Found at i:33331 original size:19 final size:18
Alignment explanation
Indices: 33294--33332 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
33284 TATTAATAGT
*
33294 ATTAATAATATAATAATA
1 ATTAATAAAATAATAATA
*
33312 ATTAATAAAAATAATTATA
1 ATTAAT-AAAATAATAATA
33331 AT
1 AT
33333 ATATATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATTAATAAAATAATAATA
Found at i:33338 original size:2 final size:2
Alignment explanation
Indices: 33327--33384 Score: 109
Period size: 2 Copynumber: 29.5 Consensus size: 2
33317 TAAAAATAAT
33327 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
33368 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
33385 TAAGTCCTAT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 54 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:34618 original size:14 final size:14
Alignment explanation
Indices: 34599--34632 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
34589 AAATGTAATT
*
34599 CATTTTACGGAAAA
1 CATTTTACGAAAAA
*
34613 CATTTTTCGAAAAA
1 CATTTTACGAAAAA
34627 CATTTT
1 CATTTT
34633 CTAGAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (14 bp):
CATTTTACGAAAAA
Found at i:34677 original size:15 final size:15
Alignment explanation
Indices: 34650--34698 Score: 66
Period size: 14 Copynumber: 3.4 Consensus size: 15
34640 TATAATTAAT
34650 TTTCCAG-AATTCAA
1 TTTCCAGTAATTCAA
* *
34664 ATTCCAGTAATTCAT
1 TTTCCAGTAATTCAA
34679 TTTCCA-TAATTCAA
1 TTTCCAGTAATTCAA
34693 TTTCCA
1 TTTCCA
34699 AAAAACCAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 19 0.63
15 11 0.37
ACGTcount: A:0.33, C:0.22, G:0.04, T:0.41
Consensus pattern (15 bp):
TTTCCAGTAATTCAA
Found at i:34684 original size:29 final size:29
Alignment explanation
Indices: 34642--34698 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
34632 TCTAGAAATA
34642 TAATTAATTTTCCAGAATTCAAATTCCAG
1 TAATTAATTTTCCAGAATTCAAATTCCAG
* * *
34671 TAATTCATTTTCCATAATTCAATTTCCA
1 TAATTAATTTTCCAGAATTCAAATTCCA
34699 AAAAACCAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.42
Consensus pattern (29 bp):
TAATTAATTTTCCAGAATTCAAATTCCAG
Found at i:41561 original size:25 final size:24
Alignment explanation
Indices: 41532--41613 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 24
41522 CTACGCGTCC
41532 CTTCGGGAAAAAATTCTACGTGGT
1 CTTCGGGAAAAAATTCTACGTGGT
* * *
41556 CATTCGGGACAAATTTCTATGTGGTT
1 C-TTCGGGAAAAAATTCTACGTGG-T
* *
41582 CTTCAGG-AAAAATTCTACGCGGT
1 CTTCGGGAAAAAATTCTACGTGGT
41605 CCTTCGGGA
1 -CTTCGGGA
41614 CAAATCTATG
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
23 1 0.02
24 18 0.40
25 24 0.53
26 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (24 bp):
CTTCGGGAAAAAATTCTACGTGGT
Found at i:41632 original size:23 final size:24
Alignment explanation
Indices: 41616--41662 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
41606 CTTCGGGACA
*
41616 AATCTATGTGGCACTTCGGTGCAT
1 AATCTACGTGGCACTTCGGTGCAT
*
41640 ATTCTACGTGGCACTTCGGTGCA
1 AATCTACGTGGCACTTCGGTGCA
41663 AATTTTATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.23, G:0.26, T:0.32
Consensus pattern (24 bp):
AATCTACGTGGCACTTCGGTGCAT
Found at i:41647 original size:47 final size:48
Alignment explanation
Indices: 41540--41632 Score: 134
Period size: 49 Copynumber: 1.9 Consensus size: 48
41530 CCCTTCGGGA
* **
41540 AAAAATTCTACGTGGTCATTCGGGACAAATTTCTATGTGGTTCTTCAGG
1 AAAAATTCTACGCGGTCATTCGGGACAAA-TTCTATGTGGCACTTCAGG
*
41589 AAAAATTCTACGCGGTCCTTCGGGACAAA-TCTATGTGGCACTTC
1 AAAAATTCTACGCGGTCATTCGGGACAAATTCTATGTGGCACTTC
41633 GGTGCATATT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 13 0.32
49 27 0.68
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (48 bp):
AAAAATTCTACGCGGTCATTCGGGACAAATTCTATGTGGCACTTCAGG
Found at i:41657 original size:47 final size:49
Alignment explanation
Indices: 41540--41671 Score: 132
Period size: 47 Copynumber: 2.8 Consensus size: 49
41530 CCCTTCGGGA
**
41540 AAAAATTCTACGTGGTCA-TTCGGGACAAATTTCTATGTGGTTCTTCAGG
1 AAAAATTCTACGTGGTCACTTCGGGACAAA-TTCTATGTGGCACTTCAGG
*
41589 AAAAATTCTACGCGGTC-CTTCGGGACAAA-TCTATGTGGCACTTC-GG
1 AAAAATTCTACGTGGTCACTTCGGGACAAATTCTATGTGGCACTTCAGG
** * *
41635 TGCATATTCTACGTGG-CACTTCGGTG-CAAATTTTATG
1 -AAAAATTCTACGTGGTCACTTCGG-GACAAATTCTATG
41672 AGCAATGGTG
Statistics
Matches: 70, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
46 3 0.04
47 34 0.49
48 6 0.09
49 27 0.39
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (49 bp):
AAAAATTCTACGTGGTCACTTCGGGACAAATTCTATGTGGCACTTCAGG
Found at i:43012 original size:7 final size:7
Alignment explanation
Indices: 43000--43026 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
42990 TTCTGAATCT
43000 TTTCCTG
1 TTTCCTG
43007 TTTCCTG
1 TTTCCTG
43014 TTTCCTG
1 TTTCCTG
43021 TTTCCT
1 TTTCCT
43027 TTTTACGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.30, G:0.11, T:0.59
Consensus pattern (7 bp):
TTTCCTG
Found at i:44299 original size:21 final size:20
Alignment explanation
Indices: 44213--44370 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
44203 AAATGACCAA
**
44213 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
44232 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
44252 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
44272 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
44293 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
44314 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
44334 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
44355 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
44371 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:44399 original size:20 final size:20
Alignment explanation
Indices: 44337--44546 Score: 233
Period size: 20 Copynumber: 10.5 Consensus size: 20
44327 CGATTTTCCA
* ** *
44337 AAATCGCAACGCGAATATGA
1 AAATCGCAACGAGAATCCGT
* *
44357 AAATCGCAACGCGAA-CACAT
1 AAATCGCAACGAGAATC-CGT
* *
44377 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGAGAATCCGT
* * *
44397 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGAGAATCCGT
* * *
44417 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGAGAATCCGT
*
44437 AAATCGCAACGATAATCCGT
1 AAATCGCAACGAGAATCCGT
*
44457 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGAGAATCCGT
*
44477 AAATCGCAACGATAATCCGT
1 AAATCGCAACGAGAATCCGT
44497 AAATCGCAACGAGAATCCGT
1 AAATCGCAACGAGAATCCGT
*
44517 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGAGAATCCGT
*
44537 AAATCACAAC
1 AAATCGCAAC
44547 ACTGAAATTT
Statistics
Matches: 166, Mismatches: 22, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
20 165 0.99
21 1 0.01
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGAGAATCCGT
Found at i:45267 original size:24 final size:24
Alignment explanation
Indices: 45228--45274 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
45218 AAATTTGGTC
45228 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
45252 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
45275 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:45466 original size:12 final size:12
Alignment explanation
Indices: 45449--45473 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45439 ATATAATCCT
45449 GAAGAAGAAAAA
1 GAAGAAGAAAAA
45461 GAAGAAGAAAAA
1 GAAGAAGAAAAA
45473 G
1 G
45474 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:47846 original size:19 final size:19
Alignment explanation
Indices: 47806--47903 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
47796 GATTCTCTCG
47806 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
47826 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
47845 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
47859 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
47878 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
47897 TTGCGAT
1 TTGCGAT
47904 AGTCAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.51
20 15 0.21
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:47900 original size:52 final size:53
Alignment explanation
Indices: 47787--47903 Score: 227
Period size: 53 Copynumber: 2.2 Consensus size: 53
47777 GAAATGAAAA
47787 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
47840 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
47892 TCGCATTGCGAT
1 TCGCATTGCGAT
47904 AGTCAATTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 30 0.47
53 34 0.53
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:48041 original size:52 final size:53
Alignment explanation
Indices: 47962--48072 Score: 215
Period size: 52 Copynumber: 2.1 Consensus size: 53
47952 CCATTACATT
47962 TCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAA
1 TCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAA
48015 TCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAA
1 TCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAA
48067 TCGCAA
1 TCGCAA
48073 CGAGAGAATC
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 49 0.84
53 9 0.16
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (53 bp):
TCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAA
Found at i:48050 original size:33 final size:33
Alignment explanation
Indices: 48013--48104 Score: 166
Period size: 33 Copynumber: 2.8 Consensus size: 33
48003 GCGAAATGAA
48013 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
48046 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
* *
48079 AATCGCAACGCGAAATTAAAATCGCA
1 AATCGCAATGCGAAATGAAAATCGCA
48105 TTGCGATTCT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.13
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAG
Found at i:48051 original size:14 final size:14
Alignment explanation
Indices: 48032--48088 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
48022 GCGAAATGAA
48032 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
48046 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
48065 AATCGCAACGAGAG
1 AATCGCAACGAGAG
48079 AATCGCAACG
1 AATCGCAACG
48089 CGAAATTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.21, G:0.25, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:48159 original size:19 final size:19
Alignment explanation
Indices: 48117--48216 Score: 147
Period size: 19 Copynumber: 5.5 Consensus size: 19
48107 GCGATTCTCC
48117 CATTGCGATTTTCATTTCCG
1 CATTGCGATTTTCATTT-CG
48137 CATTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
*
48156 CATTGCGA--TTC-TCTCG
1 CATTGCGATTTTCATTTCG
48172 --TTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
48189 CATTGCGATTTTCATTTCG
1 CATTGCGATTTTCATTTCG
48208 CATTGCGAT
1 CATTGCGAT
48217 AGTCAATTTT
Statistics
Matches: 73, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.49
20 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (19 bp):
CATTGCGATTTTCATTTCG
Found at i:48213 original size:52 final size:53
Alignment explanation
Indices: 48100--48216 Score: 209
Period size: 53 Copynumber: 2.2 Consensus size: 53
48090 GAAATTAAAA
48100 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
* *
48153 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
48205 TCGCATTGCGAT
1 TCGCATTGCGAT
48217 AGTCAATTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 30 0.48
53 32 0.52
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCCCATTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:48342 original size:14 final size:14
Alignment explanation
Indices: 48323--48359 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
48313 CATCAATTAC
48323 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
48337 ACAAATCATCTTTT
1 ACAAATCAACTTTT
48351 ACAAATCAA
1 ACAAATCAA
48360 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:50353 original size:14 final size:14
Alignment explanation
Indices: 50334--50390 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
50324 GCGAAATGAA
*
50334 AATCGCAACGACAG
1 AATCGCAACGAAAG
50348 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
50365 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
50381 AATCGCAACG
1 AATCGCAACG
50391 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:50361 original size:33 final size:33
Alignment explanation
Indices: 50315--50407 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
50305 GCGAAACCAA
*
50315 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
50348 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
50381 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
50408 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:50372 original size:19 final size:19
Alignment explanation
Indices: 50278--50412 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
50268 TAGTTTACTT
* *
50278 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
50298 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
50317 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
50336 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
50350 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
50369 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
50383 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
50402 TCGCAATGCGA
1 TCGCAACGCGA
50413 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:50430 original size:19 final size:19
Alignment explanation
Indices: 50408--50536 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
50398 AAAATCGCAA
50408 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
50427 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
50441 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
50460 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
50474 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
50493 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
50512 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
50532 TGCGA
1 TGCGA
50537 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:50450 original size:33 final size:33
Alignment explanation
Indices: 50408--50499 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
50398 AAAATCGCAA
50408 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
50441 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
50474 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
50500 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:50739 original size:93 final size:93
Alignment explanation
Indices: 50580--51052 Score: 912
Period size: 93 Copynumber: 5.1 Consensus size: 93
50570 TTGAATGGAT
50580 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
50645 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
50673 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTATAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
50738 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
50766 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTATAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
50831 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
50859 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
50924 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
50952 -AATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
51016 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
51044 AAATTTACT
1 AAATTTACT
51053 AAGCAATCTA
Statistics
Matches: 376, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
92 91 0.24
93 285 0.76
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.23
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:52776 original size:14 final size:14
Alignment explanation
Indices: 52757--52846 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
52747 TTGAAATGAA
52757 AATCGCAACGAGAG
1 AATCGCAACGAGAG
52771 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
52788 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
52804 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
52823 AATCGCAACGAGAG
1 AATCGCAACGAGAG
52837 AATCGCAACG
1 AATCGCAACG
52847 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:52794 original size:33 final size:33
Alignment explanation
Indices: 52749--52863 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
52739 TCTTTTGGTT
52749 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
52782 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
52815 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
52848 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
52864 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:52795 original size:19 final size:18
Alignment explanation
Indices: 52756--52868 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
52746 GTTGAAATGA
52756 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
52771 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
52788 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
52804 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
52821 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
52837 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
52854 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
52869 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:52899 original size:14 final size:14
Alignment explanation
Indices: 52880--52936 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
52870 TTTGGTTTCG
52880 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
52894 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
52913 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
52927 CGTTGCGATT
1 CGTTGCGATT
52937 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:52912 original size:33 final size:33
Alignment explanation
Indices: 52864--52944 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
52854 AAAATCGCAA
**
52864 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
52897 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
52930 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
52945 TCTCGTTGCG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.09, C:0.22, G:0.22, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:52947 original size:21 final size:21
Alignment explanation
Indices: 52921--52996 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
52911 CGCGTTGCGA
52921 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
52942 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
52962 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
52983 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
52997 CTCTTCTGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.12, C:0.25, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:52977 original size:41 final size:41
Alignment explanation
Indices: 52920--52997 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
52910 TCGCGTTGCG
*
52920 ATTCTCTCGTTGCGATTTTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
52961 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
52998 TCTTCTGCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.13, C:0.26, G:0.17, T:0.45
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
Found at i:53123 original size:33 final size:33
Alignment explanation
Indices: 53076--53146 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
53066 AATACTAACT
* *
53076 TGAAAATCGGAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
53109 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
53142 TGAAA
1 TGAAA
53147 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:53380 original size:22 final size:22
Alignment explanation
Indices: 53328--53382 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
53318 TGGTTGTGAG
**
53328 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
53350 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
53372 GGATTTCTTCG
1 GGATTTCTTCG
53383 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:53553 original size:20 final size:20
Alignment explanation
Indices: 53528--53682 Score: 206
Period size: 20 Copynumber: 7.7 Consensus size: 20
53518 CTTTAAATAT
53528 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
53548 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
53570 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
53589 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* *
53609 CGCATTGCGATTTATC-CATA
1 CGCGTTGCGATTTA-CGGATA
53629 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
53649 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
53669 CGCGTTGCGATTTA
1 CGCGTTGCGATTTA
53683 TGTGTTCGTG
Statistics
Matches: 116, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
19 3 0.03
20 96 0.83
21 15 0.13
22 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:53715 original size:60 final size:60
Alignment explanation
Indices: 53528--53721 Score: 246
Period size: 60 Copynumber: 3.2 Consensus size: 60
53518 CTTTAAATAT
*
53528 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATT-ATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGT-GTTGCGATTTACGGATA
* * ** * *
53589 CGCGTTGCGATATACGGATACGCATTGCGATTTATCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGTGTTGCGATTTACGGATA
* * * ** *
53649 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGTGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGTGTTGCGATTTACGGATA
53709 CGCGTTGCGATTT
1 CGCGTTGCGATTT
53722 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.37
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGTGTTGCGATTTACGGATA
Found at i:53738 original size:21 final size:21
Alignment explanation
Indices: 53708--53790 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
53698 ATTTTCATAT
*
53708 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
53729 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
53750 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
53771 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
53791 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:54865 original size:162 final size:162
Alignment explanation
Indices: 54598--54930 Score: 576
Period size: 162 Copynumber: 2.1 Consensus size: 162
54588 TCGATACTGA
54598 TTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTATCAACACTT
1 TTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTATCAACACTT
* * *
54663 TATTGGCGCTATAACTTCTTTTCTTTTAAATTCTAAAAGTGTCGATACTTATAATAAAATATCGA
66 TATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAATATCGA
* * *
54728 CACTTTCAACATATCTGGTAGCTCTTTACCGG
131 CACTATCAACATATCCGGTAGCGCTTTACCGG
* * *
54760 TTTTGTCATATTTTTACTTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTT
1 TTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTATCAACACTT
54825 TATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAATATCGA
66 TATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAATATCGA
*
54890 CACTATCAACATATCCGGTAGCGCTTTACCTG
131 CACTATCAACATATCCGGTAGCGCTTTACCGG
54922 TTTTGTCAT
1 TTTTGTCAT
54931 TTATAGACTG
Statistics
Matches: 161, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
162 161 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (162 bp):
TTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTATCAACACTT
TATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAATATCGA
CACTATCAACATATCCGGTAGCGCTTTACCGG
Found at i:55260 original size:21 final size:20
Alignment explanation
Indices: 55213--55263 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
55203 CTCTTTACCG
55213 GTTTTGTCATTTCGAGACCA
1 GTTTTGTCATTTCGAGACCA
*
55233 GTTTTGTCATTTGGAGACCA
1 GTTTTGTCATTTCGAGACCA
55253 GTTTTTGTCAT
1 G-TTTTGTCAT
55264 ATTTTTACCT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 20 0.69
21 9 0.31
ACGTcount: A:0.18, C:0.16, G:0.22, T:0.45
Consensus pattern (20 bp):
GTTTTGTCATTTCGAGACCA
Found at i:55734 original size:111 final size:112
Alignment explanation
Indices: 55373--55833 Score: 746
Period size: 112 Copynumber: 4.1 Consensus size: 112
55363 GATACTTATA
* * * *
55373 ATAAAGTATCGACACTATCAACATATCTGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGGT
*
55438 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATATATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCAATATATTTTT
* * *
55485 ATAAAGTATCGACACTTTCAATATATCTGGTTGCGATTTACCTGTTTTGTCATTTATAGACCGAT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGGT
* *
55550 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCAATATATTTTT
* * *
55597 ATAAAGTATCGACACTTTCAAAATATCCGGTAGCTATTTACCTGTTTTGTCATTTATAGACTGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGGT
* * *
55662 TTTGTCA-TTGTTTACCTGTTATATTATTATAGATCAATATATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCAATATATTTTT
*
55708 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGGT
*
55773 TTTGTCA-TTTTTTACCTATTATATTGTTATGGATCAATATATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCAATATATTTTT
55819 ATAAAGTATCGACAC
1 ATAAAGTATCGACAC
55834 AAACTGATAA
Statistics
Matches: 324, Mismatches: 25, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
111 152 0.47
112 172 0.53
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.45
Consensus pattern (112 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCAATATATTTTT
Found at i:55750 original size:223 final size:223
Alignment explanation
Indices: 55373--55833 Score: 753
Period size: 223 Copynumber: 2.1 Consensus size: 223
55363 GATACTTATA
* * *
55373 ATAAAGTATCGACACTATCAACATATCTGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTATCAAAATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGGT
* * * *
55438 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATATATTTTTATAAAGTATCGACACTTT
66 TTTGTCATTTGTTTACCTGTTATATTATTATAGATCAATATATTTTTATAAAGTATCGACACTTT
* *
55503 CAATATATCTGGTTGCGATTTACCTGTTTTGTCATTTATAGACCGATTTTGTCATTTTTTTACCT
131 CAATATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGATTTTGTCA-TTTTTTACCT
* *
55568 GTTATATTGTTATGGATCGATACATTTTT
195 ATTATATTGTTATGGATCAATACATTTTT
* * *
55597 ATAAAGTATCGACACTTTCAAAATATCCGGTAGCTATTTACCTGTTTTGTCATTTATAGACTGGT
1 ATAAAGTATCGACACTATCAAAATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGGT
55662 TTTGTCA-TTGTTTACCTGTTATATTATTATAGATCAATATATTTTTATAAAGTATCGACACTTT
66 TTTGTCATTTGTTTACCTGTTATATTATTATAGATCAATATATTTTTATAAAGTATCGACACTTT
* *
55726 CAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGTTTTGTCATTTTTTACCTA
131 CAATATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGATTTTGTCATTTTTTACCTA
*
55791 TTATATTGTTATGGATCAATATATTTTT
196 TTATATTGTTATGGATCAATACATTTTT
55819 ATAAAGTATCGACAC
1 ATAAAGTATCGACAC
55834 AAACTGATAA
Statistics
Matches: 220, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
222 51 0.23
223 103 0.47
224 66 0.30
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.45
Consensus pattern (223 bp):
ATAAAGTATCGACACTATCAAAATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTGTTTACCTGTTATATTATTATAGATCAATATATTTTTATAAAGTATCGACACTTT
CAATATATCCGGTAGCGATTTACCTGTTTTGTCATTTATAGACCGATTTTGTCATTTTTTACCTA
TTATATTGTTATGGATCAATACATTTTT
Found at i:56118 original size:6 final size:6
Alignment explanation
Indices: 56103--56142 Score: 62
Period size: 6 Copynumber: 6.3 Consensus size: 6
56093 GGAGCATCTG
56103 AAAATAA AAAATAA AAAATA AAAATA AAAATA AAAATA AA
1 AAAAT-A AAAAT-A AAAATA AAAATA AAAATA AAAATA AA
56143 TGTATTGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 21 0.64
7 12 0.36
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:60046 original size:12 final size:12
Alignment explanation
Indices: 60029--60061 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
60019 GACAAACCAC
60029 GTCGTGCCCCAA
1 GTCGTGCCCCAA
60041 GTCGTGCCCCAA
1 GTCGTGCCCCAA
*
60053 GTCATGCCC
1 GTCGTGCCC
60062 ATGTCTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.42, G:0.24, T:0.18
Consensus pattern (12 bp):
GTCGTGCCCCAA
Found at i:61342 original size:3 final size:3
Alignment explanation
Indices: 61334--61367 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
61324 ATTGATTTAT
61334 TTA TTA TTA TTA TTA TATA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
61368 AATAAATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:61354 original size:16 final size:16
Alignment explanation
Indices: 61330--61365 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
61320 CCATATTGAT
*
61330 TTATTTATTATTATTA
1 TTATATATTATTATTA
61346 TTATATATTATTATTA
1 TTATATATTATTATTA
61362 TTAT
1 TTAT
61366 TAAATAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTATATATTATTATTA
Found at i:62769 original size:20 final size:21
Alignment explanation
Indices: 62723--62769 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
62713 CTGCTTTTAA
*
62723 ATATATCGTTCTAATTGTATT
1 ATATATTGTTCTAATTGTATT
* *
62744 -TTTATTGTTTTAATTGT-TT
1 ATATATTGTTCTAATTGTATT
62763 ATATATT
1 ATATATT
62770 TAAATATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.62
Consensus pattern (21 bp):
ATATATTGTTCTAATTGTATT
Found at i:63052 original size:12 final size:11
Alignment explanation
Indices: 63020--63044 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63010 TTTTCTGATA
63020 TTTCTAAATAT
1 TTTCTAAATAT
63031 TTTCTAAATAT
1 TTTCTAAATAT
63042 TTT
1 TTT
63045 TTTAAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTCTAAATAT
Found at i:65260 original size:14 final size:14
Alignment explanation
Indices: 65241--65284 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
65231 TTTTAAATAA
65241 TTTACATTTACATT
1 TTTACATTTACATT
* *
65255 TTTACATTCACATA
1 TTTACATTTACATT
*
65269 TTTACATTTGCATT
1 TTTACATTTACATT
65283 TT
1 TT
65285 GCATCTTTAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.02, T:0.55
Consensus pattern (14 bp):
TTTACATTTACATT
Found at i:71065 original size:114 final size:114
Alignment explanation
Indices: 70782--71120 Score: 554
Period size: 114 Copynumber: 3.0 Consensus size: 114
70772 AAGTGCCATG
70782 TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
* *
70847 TGGTTTGGTATGAACCCC-AAACCAATCATTAGATTTTAAAGATGAATT
66 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTAAAAGATGAATT
*
70895 TGCTCATAATAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
70960 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTAAAAGATGAATT
66 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTAAAAGATGAATT
* *
71009 TGCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
* * * * * * * *
71074 TGATTCGGTAGGAACCCCAGAATCGATCATTGGAATTGAAAGATGAA
66 TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTAAAAGATGAA
71121 CTGCATGATC
Statistics
Matches: 211, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
113 82 0.39
114 129 0.61
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (114 bp):
TGCTCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
TGGTTTGGTATGAACCCCAAAACCAATCATTGGATTTAAAAGATGAATT
Found at i:73609 original size:22 final size:22
Alignment explanation
Indices: 73578--73632 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
73568 ATCTACACTC
* *
73578 TTCAAAGATGATAGATTCCCTT
1 TTCAAAGATGACAGATTACCTT
* *
73600 TTTAAAGATGACAGATTATCTT
1 TTCAAAGATGACAGATTACCTT
73622 TTCAAAGATGA
1 TTCAAAGATGA
73633 AAGCTTTATC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (22 bp):
TTCAAAGATGACAGATTACCTT
Found at i:74252 original size:116 final size:116
Alignment explanation
Indices: 74018--75485 Score: 2734
Period size: 116 Copynumber: 12.7 Consensus size: 116
74008 TTAGCAAATA
** * * *
74018 TTTAAATTCATCATTCAATGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAAGAA--C-TCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
74080 CTGAAGAA-G--GAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
74128 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
74193 CTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
* *
74244 TTTAAATTCATCATTTGATGGATTAACATTTCCAGGTAGAGTTCATAATAAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
74309 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
74360 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
74425 CTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
74476 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
74541 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
74592 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
74657 CTGAAGAAGGAAGAAGAAGTTCATAATGAAAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
* *
74708 TTTAAATTCATTATTTGATGGATTAACATTGCCAGGTAAAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
74773 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
74824 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
74889 CTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
74940 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
75005 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
75056 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
75121 CTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
75172 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
75237 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
*
75288 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTAATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
75353 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
*
75404 TTTAAATTCATCATTTGATGGATTAACATTGCCATGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
75469 CTGAAGAAAG-AGAAGAA
66 CTGAAGAAGGAAGAAGAA
75486 TTTGTTCAAC
Statistics
Matches: 1325, Mismatches: 27, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
110 52 0.04
112 1 0.00
113 12 0.01
114 1 0.00
115 7 0.01
116 1252 0.94
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (116 bp):
TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
Found at i:74418 original size:232 final size:232
Alignment explanation
Indices: 74018--75841 Score: 3149
Period size: 232 Copynumber: 8.0 Consensus size: 232
74008 TTAGCAAATA
** * * *
74018 TTTAAATTCATCATTCAATGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAAGAA--C-TCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
74080 CTGAAGAA-G--GAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
74142 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
131 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
74207 AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
196 AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
* *
74244 TTTAAATTCATCATTTGATGGATTAACATTTCCAGGTAGAGTTCATAATAAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
74309 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
74374 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
131 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
74439 AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
196 AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
74476 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
74541 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
74606 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
131 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
74671 AGAAGTTCATAATGAA-AAGAATTTGTTCAACCTTTTG
196 AGAAGTTCATAAT-AAGAAGAATTTGTTCAACCTTTTG
* *
74708 TTTAAATTCATTATTTGATGGATTAACATTGCCAGGTAAAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
74773 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
74838 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
131 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
74903 AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
196 AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
74940 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
75005 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
75070 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
131 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
75135 AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
196 AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
75172 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
75237 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
*
75302 TTGATGGATTAACATTGCCAGGTAGAGTTAATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
131 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
*
75367 AGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
196 AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
*
75404 TTTAAATTCATCATTTGATGGATTAACATTGCCATGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
75469 CT-------------GAAG---A-AA-GAGAAGAATTTGTTCAACCTTTTGTTTAAATTAATCAT
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
*
75516 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTAAAGAAGGAAGA
131 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
*
75581 AGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
196 AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
75618 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
* * * *
75683 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCAC
66 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
** * * *
75748 TTGATGGAGCAGCTTTTCCA-G-AGAAGTTCATAATGAGAAGAA-T--TCATCT---GAA-GAAG
131 TTGATGGATTAACATTGCCAGGTAG-AGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAG
** *
75804 AAGAAGTTCATAATAAGAAGAGCTTGTTCAACTTTTTG
195 AAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
75842 CATAATTCTA
Statistics
Matches: 1537, Mismatches: 34, Indels: 56
0.94 0.02 0.03
Matches are distributed among these distances:
214 203 0.13
215 2 0.00
216 1 0.00
219 4 0.00
224 38 0.02
225 3 0.00
226 50 0.03
227 4 0.00
228 7 0.00
229 12 0.01
230 5 0.00
231 23 0.01
232 1183 0.77
233 2 0.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (232 bp):
TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
Found at i:74649 original size:348 final size:347
Alignment explanation
Indices: 74018--75841 Score: 3132
Period size: 348 Copynumber: 5.3 Consensus size: 347
74008 TTAGCAAATA
** * * *
74018 TTTAAATTCATCATTCAATGGATCAGCATTGCCAGGTCGAGTTCATAATGAGAAGAA--C-TCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
74080 CTGAAGAAG--GAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATT
66 CTGAAGAAGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATT
74143 TGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAA
131 TGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAA
*
74208 GAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACAT
196 GAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACAT
* *
74273 TTCCAGGTAGAGTTCATAATAAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
261 TGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
74338 GAAGAATTTGTTCAACCTTTTG
326 GAAGAATTTGTTCAACCTTTTG
74360 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
74425 CTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
66 CTGAAGAA-GAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
74490 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
130 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
74555 AGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACA
195 AGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACA
74620 TTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
260 TTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
*
74685 AAAAGAATTTGTTCAACCTTTTG
325 AGAAGAATTTGTTCAACCTTTTG
* *
74708 TTTAAATTCATTATTTGATGGATTAACATTGCCAGGTAAAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
74773 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
66 CTGAAGAA-GAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
74838 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
130 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
*
74903 AGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACA
195 AGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACA
74968 TTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
260 TTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
75033 AGAAGAATTTGTTCAACCTTTTG
325 AGAAGAATTTGTTCAACCTTTTG
75056 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
75121 CTGAAGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
66 CTGAAGAA-GAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAT
75186 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
130 TTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGA
75251 AGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACA
195 AGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACA
*
75316 TTGCCAGGTAGAGTTAATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
260 TTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
75381 AGAAGAATTTGTTCAACCTTTTG
325 AGAAGAATTTGTTCAACCTTTTG
*
75404 TTTAAATTCATCATTTGATGGATTAACATTGCCATGTAGAGTTCATAATGAGAAGAACTCGTCAT
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
*
75469 CT------GAAG-A-AAG---------AGAAGAATTTGTTCAACCTTTTGTTTAAATTAATCATT
66 CTGAAGAAGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATT
*
75517 TGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTAAAGAAGGAAGAA
131 TGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAA
75582 GAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACAT
196 GAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACAT
75647 TGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
261 TGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
75712 GAAGAATTTGTTCAACCTTTTG
326 GAAGAATTTGTTCAACCTTTTG
* * * * ** * * *
75734 CTCAAATCCATCACTTGATGGAGCAGCTTTTCCA-G-AGAAGTTCATAATGAGAAGAA-T--TCA
1 TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAG-AGTTCATAATGAGAAGAACTCGTCA
** *
75794 TCT---GAAGAAGAAGAAGTTCATAATAAGAAGAGCTTGTTCAACTTTTTG
65 TCTGAAGAAGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTG
75842 CATAATTCTA
Statistics
Matches: 1425, Mismatches: 36, Indels: 44
0.95 0.02 0.03
Matches are distributed among these distances:
326 6 0.00
328 3 0.00
329 23 0.02
330 278 0.20
331 3 0.00
339 3 0.00
340 21 0.01
341 4 0.00
342 52 0.04
344 1 0.00
345 12 0.01
346 1 0.00
348 1018 0.71
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (347 bp):
TTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCAT
CTGAAGAAGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATT
TGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAA
GAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACAT
TGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
GAAGAATTTGTTCAACCTTTTG
Found at i:75519 original size:214 final size:214
Alignment explanation
Indices: 75264--75700 Score: 820
Period size: 214 Copynumber: 2.0 Consensus size: 214
75254 AGTTCATAAT
*
75264 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAG
1 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAG
*
75329 TTAATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
66 TTAATAATGAGAAGAACTCGTCATCTAAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
*
75394 CAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCATGTAGAGTTCATAATGAGAAG
131 CAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAG
75459 AACTCGTCATCTGAAGAAA
196 AACTCGTCATCTGAAGAAA
75478 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAG
1 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAG
*
75543 TTCATAATGAGAAGAACTCGTCATCTAAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
66 TTAATAATGAGAAGAACTCGTCATCTAAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
75608 CAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAG
131 CAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAG
*
75673 AACTCGTCATCTGAAGAAG
196 AACTCGTCATCTGAAGAAA
75692 GAAGAAGAA
1 G-AGAAGAA
75701 GTTCATAATG
Statistics
Matches: 217, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
214 210 0.97
215 7 0.03
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (214 bp):
GAGAAGAATTTGTTCAACCTTTTGTTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAG
TTAATAATGAGAAGAACTCGTCATCTAAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
CAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAGTTCATAATGAGAAG
AACTCGTCATCTGAAGAAA
Found at i:75549 original size:98 final size:98
Alignment explanation
Indices: 75380--75584 Score: 365
Period size: 98 Copynumber: 2.1 Consensus size: 98
75370 AGTTCATAAT
* *
75380 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCATGTAGAG
1 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAG
*
75445 TTCATAATGAGAAGAACTCGTCATCTGAAGAAA
66 TTCATAATGAGAAGAACTCGTCATCTAAAGAAA
75478 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAG
1 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAG
*
75543 TTCATAATGAGAAGAACTCGTCATCTAAAGAAG
66 TTCATAATGAGAAGAACTCGTCATCTAAAGAAA
75576 GAAGAAGAA
1 G-AGAAGAA
75585 GTTCATAATG
Statistics
Matches: 102, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
98 95 0.93
99 7 0.07
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.32
Consensus pattern (98 bp):
GAGAAGAATTTGTTCAACCTTTTGTTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAG
TTCATAATGAGAAGAACTCGTCATCTAAAGAAA
Found at i:75682 original size:116 final size:115
Alignment explanation
Indices: 75478--75841 Score: 519
Period size: 116 Copynumber: 3.2 Consensus size: 115
75468 TCTGAAGAAA
*
75478 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTAATCATTTGATGGATTAACATTGCCAGGTAGAG
1 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAG
75543 TTCATAATGAGAAGAACTCGTCATCTAAAGAAGGAAGAAGAAGTTCATAAT
66 TTCATAATGAGAAGAACTCGTCATCT-AAGAAGGAAGAAGAAGTTCATAAT
75594 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAG
1 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAG
75659 TTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
66 TTCATAATGAGAAGAACTCGTCATCT-AAGAAGGAAGAAGAAGTTCATAAT
* * * * ** * * *
75710 GAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGAGCAGCTTTTCCA-G-AGAA
1 GAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAG-A
75773 GTTCATAATGAGAAGAA-T--TCATCT--GAA-GAAGAAGAAGTTCATAAT
65 GTTCATAATGAGAAGAACTCGTCATCTAAGAAGGAAGAAGAAGTTCATAAT
* ** *
75818 AAGAAGAGCTTGTTCAACTTTTTG
1 GAGAAGAATTTGTTCAACCTTTTG
75842 CATAATTCTA
Statistics
Matches: 232, Mismatches: 15, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
108 38 0.16
109 3 0.01
112 6 0.03
114 3 0.01
115 19 0.08
116 163 0.70
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (115 bp):
GAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCATTTGATGGATTAACATTGCCAGGTAGAG
TTCATAATGAGAAGAACTCGTCATCTAAGAAGGAAGAAGAAGTTCATAAT
Found at i:75823 original size:17 final size:17
Alignment explanation
Indices: 75769--75824 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
75759 GCTTTTCCAG
*
75769 AGAAGTTCATAATGAGA
1 AGAAGTTCATAATAAGA
*
75786 AGAA-TTCATCTGAAGAAGA
1 AGAAGTTCA--T-AATAAGA
75805 AGAAGTTCATAATAAGA
1 AGAAGTTCATAATAAGA
75822 AGA
1 AGA
75825 GCTTGTTCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 4 0.12
17 13 0.41
18 2 0.06
19 9 0.28
20 4 0.12
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.21
Consensus pattern (17 bp):
AGAAGTTCATAATAAGA
Found at i:75961 original size:84 final size:82
Alignment explanation
Indices: 75807--75990 Score: 226
Period size: 84 Copynumber: 2.2 Consensus size: 82
75797 GAAGAAGAAG
* * * * * *
75807 AAGTTCATAATAAGAAGAGCTTGTTCAACTTTTTGCATAATTCTATCACAGAAGGAGATAGATTA
1 AAGTTCATAATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGATCA
*
75872 GCATCAACCTTTCCAG-AGA
66 ACATCAACC---CCAGCAGA
* * * *
75891 AAGTTCATAATGAGAAGAGCTTATTTAACCTTTTGAATGACTCTATCACAGAAGGAAATAGGTCA
1 AAGTTCATAATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGATCA
*
75956 ACATCATCCCCAGCAGA
66 ACATCAACCCCAGCAGA
75973 AAGTTCATAATAAGAAGA
1 AAGTTCATAATAAGAAGA
75991 ACTCATCTGA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
81 4 0.05
82 20 0.23
84 62 0.72
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (82 bp):
AAGTTCATAATAAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGATCA
ACATCAACCCCAGCAGA
Found at i:76169 original size:3 final size:3
Alignment explanation
Indices: 76161--76210 Score: 82
Period size: 3 Copynumber: 16.0 Consensus size: 3
76151 ATTGATTTAT
76161 TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA TTA TATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA T-TA TTA TTA TTA
76208 TTA
1 TTA
76211 AATAAATATA
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
3 39 0.87
4 6 0.13
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:76181 original size:19 final size:19
Alignment explanation
Indices: 76157--76210 Score: 92
Period size: 19 Copynumber: 2.8 Consensus size: 19
76147 CCATATTGAT
76157 TTATTTATTATTATTATTA
1 TTATTTATTATTATTATTA
76176 TTATTTATTATTATTATTA
1 TTATTTATTATTATTATTA
76195 -TATATTATTATTATTA
1 TTAT-TTATTATTATTA
76211 AATAAATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 3 0.09
19 31 0.91
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTTATTATTATTATTA
Found at i:76183 original size:16 final size:16
Alignment explanation
Indices: 76164--76210 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
76154 GATTTATTTA
76164 TTATTATTATTATTAT
1 TTATTATTATTATTAT
76180 TTATTATTATTATTAT
1 TTATTATTATTATTAT
*
76196 ATATTATTATTATTA
1 TTATTATTATTATTA
76211 AATAAATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTATTATTATTATTAT
Found at i:77609 original size:20 final size:21
Alignment explanation
Indices: 77563--77609 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
77553 CTGCTTTTAA
*
77563 ATATATCGTTCTAATTGTATT
1 ATATATTGTTCTAATTGTATT
* *
77584 -TTTATTGTTTTAATTGT-TT
1 ATATATTGTTCTAATTGTATT
77603 ATATATT
1 ATATATT
77610 TAAATATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.62
Consensus pattern (21 bp):
ATATATTGTTCTAATTGTATT
Found at i:77892 original size:12 final size:11
Alignment explanation
Indices: 77860--77884 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
77850 TTTTCCGATA
77860 TTTCTAAATAT
1 TTTCTAAATAT
77871 TTTCTAAATAT
1 TTTCTAAATAT
77882 TTT
1 TTT
77885 TTTAAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTCTAAATAT
Found at i:79471 original size:20 final size:20
Alignment explanation
Indices: 79422--79495 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 20
79412 ATAGTATTGG
* *
79422 TACTGCAAGAACAATACAAA
1 TACTACAAGAACAATACAGA
* **
79442 TATTGTAAGAACAATACAGA
1 TACTACAAGAACAATACAGA
* **
79462 TACTACAAGAATAATATTGA
1 TACTACAAGAACAATACAGA
79482 TACTACAAGAACAA
1 TACTACAAGAACAA
79496 AATCGATACT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.53, C:0.15, G:0.11, T:0.22
Consensus pattern (20 bp):
TACTACAAGAACAATACAGA
Found at i:79503 original size:20 final size:20
Alignment explanation
Indices: 79460--79506 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
79450 GAACAATACA
* * *
79460 GATACTACAAGAATAATATT
1 GATACTACAAGAACAAAATC
79480 GATACTACAAGAACAAAATC
1 GATACTACAAGAACAAAATC
79500 GATACTA
1 GATACTA
79507 TAATAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.51, C:0.15, G:0.11, T:0.23
Consensus pattern (20 bp):
GATACTACAAGAACAAAATC
Found at i:85296 original size:55 final size:55
Alignment explanation
Indices: 85229--85334 Score: 203
Period size: 55 Copynumber: 1.9 Consensus size: 55
85219 TTCATTGGTT
85229 TTAAAATATTAATTAAAATGAGTGGTGTATATTCATCCGACTTACCAAAAGTAAA
1 TTAAAATATTAATTAAAATGAGTGGTGTATATTCATCCGACTTACCAAAAGTAAA
*
85284 TTAAAATGTTAATTAAAATGAGTGGTGTATATTCATCCGACTTACCAAAAG
1 TTAAAATATTAATTAAAATGAGTGGTGTATATTCATCCGACTTACCAAAAG
85335 GATATTAGGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (55 bp):
TTAAAATATTAATTAAAATGAGTGGTGTATATTCATCCGACTTACCAAAAGTAAA
Found at i:88772 original size:23 final size:24
Alignment explanation
Indices: 88670--88763 Score: 131
Period size: 23 Copynumber: 4.0 Consensus size: 24
88660 CACAAAAGTG
88670 CCACATAG-ATTTGTCCCGAAGGA
1 CCACATAGAATTTGTCCCGAAGGA
* **
88693 CCACGTAGAATTTGT-CATAAGGA
1 CCACATAGAATTTGTCCCGAAGGA
88716 CCACATAGAATTTGTCCCGAAGGA
1 CCACATAGAATTTGTCCCGAAGGA
*
88740 CCACATAGAA-TTGTCCTGAAGGA
1 CCACATAGAATTTGTCCCGAAGGA
88763 C
1 C
88764 TGCGTAGAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
23 40 0.65
24 22 0.35
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.22
Consensus pattern (24 bp):
CCACATAGAATTTGTCCCGAAGGA
Found at i:90154 original size:45 final size:45
Alignment explanation
Indices: 90105--90193 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 45
90095 AATACACCAT
90105 TATGCACTTT-AACATATAACAT-CTTTTCTATTGATAATGCACCCA
1 TATGCA-TTTAAAC-TATAACATACTTTTCTATTGATAATGCACCCA
** * *
90150 TATGCATTTAAACTATAGTATACTTTTCTGTTGATAATGTACCC
1 TATGCATTTAAACTATAACATACTTTTCTATTGATAATGCACCC
90194 GTATACCAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 9 0.24
45 29 0.76
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.40
Consensus pattern (45 bp):
TATGCATTTAAACTATAACATACTTTTCTATTGATAATGCACCCA
Found at i:91882 original size:17 final size:16
Alignment explanation
Indices: 91849--91893 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
91839 ATAATATATC
*
91849 ATCCAAA-AACAAAAT
1 ATCCAAACAACCAAAT
91864 ATCCAAAACAACCAAAT
1 ATCC-AAACAACCAAAT
*
91881 ATTCAAACAACCA
1 ATCCAAACAACCA
91894 TAACCAAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 4 0.15
16 12 0.46
17 10 0.38
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (16 bp):
ATCCAAACAACCAAAT
Found at i:99747 original size:44 final size:45
Alignment explanation
Indices: 99697--99794 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 45
99687 AATCTAACAA
**
99697 TATCGATACCTAT-CAAAAAGTATAGATACTACTATGTGTAGTAG
1 TATCGATACCTATCCAAAAAGTATAGATACTACTATGTAAAGTAG
* * ** *
99741 TATCGATA-TTGTCCAAGGAGTATCGATACTACTATGTAAAGTAG
1 TATCGATACCTATCCAAAAAGTATAGATACTACTATGTAAAGTAG
*
99785 TATTGATACC
1 TATCGATACC
99795 GGTCAAGGTA
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
43 2 0.05
44 41 0.95
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (45 bp):
TATCGATACCTATCCAAAAAGTATAGATACTACTATGTAAAGTAG
Done.