Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001293.1 Hibiscus syriacus cultivar Beakdansim tig00002529_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47534

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6281--6340
29
2.0
30
83
3
77
46
8
15
30
1.74
7488--7533
20
2.4
19
85
3
65
43
0
19
36
1.51
8815--8917
26
4.0
26
85
2
145
33
14
26
26
1.95
11411--11502
44
2.1
44
87
4
132
30
16
16
36
1.91
12397--12618
103
2.2
102
77
7
225
37
4
22
35
1.75
14391--14426
2
18.0
2
100
0
72
50
0
0
50
1.00
14554--14587
17
2.0
17
88
0
50
52
20
2
23
1.60
17197--17497
53
5.7
53
80
5
297
25
23
19
31
1.98
17253--17497
105
2.3
106
87
2
341
24
25
20
30
1.98
17717--17827
42
2.7
42
82
1
125
34
23
14
27
1.94
17872--17955
42
2.0
42
92
0
141
29
22
22
25
1.99
22150--22183
6
5.5
6
86
6
50
47
14
14
23
1.82
32454--32563
3
36.7
3
96
3
204
31
0
0
68
0.90
37534--37627
37
2.5
36
85
10
102
34
18
8
39
1.81
37556--37658
37
2.8
38
83
5
122
35
19
7
36
1.81
37962--38177
67
3.2
66
78
7
211
30
17
12
38
1.88
38179--39002
137
6.0
137
81
2
918
27
29
15
26
1.96
39202--39245
3
15.0
3
90
4
72
31
2
0
65
1.05
39372--39416
23
2.0
23
100
0
90
22
40
26
11
1.87
43749--43807
30
2.0
30
93
3
102
37
6
11
44
1.68
43886--44004
21
5.7
21
85
8
145
24
34
17
23
1.96
44029--44092
20
3.2
20
84
8
78
25
32
17
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44034--44071
12
3.2
12
92
0
58
28
26
18
26
1.98
44193--44232
20
1.9
22
90
10
66
37
40
10
12
1.77
47309--47372
30
2.2
29
81
8
69
39
4
14
42
1.66
47319--47376
30
2.0
30
93
3
100
37
5
12
44
1.64
47456--47511
21
2.7
21
100
0
112
21
35
19
23
1.96

Tables:   1

The End!