genome.fa.s1296.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001296.1 Hibiscus syriacus cultivar Beakdansim tig00002535_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79180

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2819--2857	14	2.8	14	88	0	60	28	12	5	53	1.60
10403--10457	22	2.5	21	80	8	65	34	14	10	40	1.81
10826--11598	113	6.8	113	87	3	1024	37	13	19	29	1.91
11937--12010	3	25.3	3	83	5	98	33	0	1	64	1.02
11935--11993	20	3.1	19	83	14	77	28	0	1	69	0.98
11947--12008	17	3.6	17	93	2	97	33	0	0	66	0.92
15171--15394	43	5.2	43	85	3	263	33	18	24	23	1.97
21258--21317	24	2.7	24	80	17	67	51	1	0	46	1.10
21363--21423	32	1.9	32	86	6	88	50	1	0	47	1.10
21454--21489	18	1.9	19	94	5	65	52	2	0	44	1.15
24634--24727	41	2.3	41	90	3	127	26	19	20	34	1.96
27493--27719	86	2.6	86	83	5	280	32	24	20	22	1.98
27496--27715	43	5.1	42	83	4	253	32	24	20	22	1.98
28976--29076	20	5.1	19	86	6	121	33	20	10	34	1.88
28976--29076	40	2.5	41	82	6	136	33	20	10	34	1.88
30023--30077	24	2.2	24	87	3	74	21	18	20	40	1.92
32847--33005	64	2.4	65	95	2	284	50	17	1	29	1.56
34299--34412	21	5.4	20	78	4	93	21	20	34	23	1.97
34299--34421	42	2.9	42	86	7	162	23	19	34	22	1.97
34730--34869	63	2.2	64	81	5	151	30	34	14	20	1.92
36449--36601	20	7.7	20	90	2	227	47	20	19	13	1.82
36620--36663	20	2.2	20	83	0	52	15	13	18	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36984--37041	22	2.6	22	91	0	98	17	13	44	24	1.85
37161--37220	20	3.0	20	97	0	111	18	11	25	45	1.83
41030--41132	51	2.0	51	98	0	197	24	9	15	50	1.74
42336--42378	14	3.0	14	80	16	52	55	0	0	44	0.99
42792--42879	2	48.0	2	77	17	75	50	0	0	50	1.00
42792--42880	38	2.4	37	87	7	119	50	0	0	49	1.00
48786--48863	15	5.2	15	68	10	52	65	7	5	21	1.38
48786--48863	30	2.6	30	85	0	93	65	7	5	21	1.38
53062--53105	22	2.0	22	95	0	79	52	11	9	27	1.67
53791--53826	18	1.9	19	88	5	56	55	11	0	33	1.35
58438--58478	2	20.5	2	84	0	55	51	7	0	41	1.30
61959--62023	29	2.2	29	78	10	71	30	9	7	52	1.61
62086--62114	3	9.7	3	100	0	58	31	0	0	68	0.89
64091--64870	165	4.7	165	89	1	1168	36	30	14	18	1.91
64098--64840	330	2.3	330	95	0	1351	37	30	14	18	1.90
64928--64991	24	2.7	24	73	7	67	50	18	7	23	1.73
68151--68590	159	2.7	162	86	3	620	37	29	14	18	1.90
72228--72392	80	2.0	81	84	3	217	43	33	5	18	1.73
75284--75354	19	3.5	21	85	9	85	33	15	22	28	1.95
75675--76168	54	9.3	53	84	6	590	32	16	18	32	1.93
75677--76144	162	2.9	162	87	2	673	33	15	17	33	1.91

Tables:   1

The End!