genome.fa.s1298.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001298.1 Hibiscus syriacus cultivar Beakdansim tig00002537_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153744

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678--744	20	3.5	18	78	11	71	37	25	17	19	1.94
1002--1048	20	2.4	20	96	3	87	36	27	21	14	1.93
1090--1157	20	3.4	20	95	0	118	17	20	26	35	1.95
1303--1350	18	2.7	18	100	0	96	41	6	20	31	1.77
3056--3162	20	5.4	20	80	3	101	45	22	16	14	1.84
3119--3162	19	2.3	19	84	7	63	45	22	20	11	1.83
3742--3823	20	4.1	20	79	6	103	26	18	25	29	1.98
3811--3866	21	2.6	22	74	5	69	39	17	25	17	1.92
4428--4457	15	2.0	15	93	0	51	70	3	0	26	1.03
4472--4502	15	2.1	15	93	0	53	54	0	3	41	1.16
4479--4652	94	1.8	94	80	9	210	54	5	6	34	1.48
5420--5463	23	1.9	23	95	0	79	25	4	50	20	1.67
6373--7185	45	18.5	45	86	3	1004	31	18	22	26	1.97
6408--7138	268	2.7	267	91	2	1143	32	17	22	26	1.97
7125--7180	21	2.7	21	72	8	60	21	21	25	32	1.98
8431--8536	55	1.9	55	86	3	151	29	16	14	39	1.88
10874--11011	68	2.0	72	88	5	212	35	18	21	25	1.95
12104--12143	19	2.1	19	86	9	55	37	15	0	47	1.45
14698--14736	19	2.1	18	85	9	51	35	15	7	41	1.76
16197--16295	2	49.5	2	100	0	198	49	0	0	50	1.00
16617--16647	15	2.1	15	93	0	53	54	0	3	41	1.16
19690--19936	118	2.1	118	85	3	327	40	14	14	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20048--20273	109	2.1	110	88	0	337	32	12	11	42	1.79
20157--20407	131	1.9	128	88	5	380	33	11	11	43	1.77
19964--20402	240	1.8	238	86	2	639	33	11	11	43	1.76
21867--21945	22	3.5	22	96	3	149	12	27	31	27	1.93
21867--21962	22	4.6	20	91	7	106	13	25	32	29	1.94
22623--22664	2	21.0	2	100	0	84	50	0	0	50	1.00
24457--24500	2	22.0	2	100	0	88	50	0	0	50	1.00
26620--26658	20	1.9	20	84	5	51	17	30	30	20	1.96
28702--28759	23	2.5	23	85	0	89	18	27	25	27	1.98
29072--29144	20	3.7	20	94	0	128	31	38	15	15	1.88
29116--29274	65	2.5	64	79	13	166	33	23	16	26	1.96
29157--29316	65	2.5	64	85	7	200	32	23	16	27	1.96
36593--36635	21	2.0	21	81	0	50	9	39	16	34	1.80
37350--37399	16	3.2	16	72	11	59	46	0	36	18	1.49
37346--37409	30	2.1	30	97	0	119	48	0	31	20	1.50
37350--37406	16	3.7	16	72	9	55	47	0	33	19	1.50
37336--37407	30	2.8	24	74	22	72	44	0	36	19	1.51
37799--37958	65	2.5	64	84	5	207	31	22	17	28	1.96
37930--37978	19	2.6	19	84	9	57	24	30	18	26	1.98
39348--39414	34	2.0	34	88	5	100	31	13	28	26	1.94
39654--40497	198	4.3	199	85	3	1087	35	12	12	40	1.80
39654--40501	397	2.1	395	88	1	1216	35	12	12	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43177--43218	21	2.0	21	85	4	57	21	9	26	42	1.83
44779--44842	2	32.0	2	100	0	128	50	0	0	50	1.00
53642--53847	115	1.8	111	86	4	295	41	15	14	29	1.86
56772--56817	2	23.0	2	100	0	92	50	0	0	50	1.00
61102--61140	16	2.4	17	86	4	53	33	7	2	56	1.41
61671--61710	21	1.9	21	89	0	62	17	22	17	42	1.89
61666--61718	21	2.5	21	78	0	61	20	24	18	35	1.95
61708--61837	20	6.7	20	76	8	142	38	19	19	23	1.93
61708--61795	41	2.2	40	87	2	122	39	19	20	20	1.92
62470--62552	20	4.2	20	87	6	123	12	24	16	46	1.81
63434--63463	15	1.9	16	93	6	53	20	3	13	63	1.43
64247--64524	94	3.1	93	87	7	401	21	11	18	47	1.80
64615--64657	20	2.2	20	100	0	86	51	13	23	11	1.74
64619--64717	33	2.9	33	87	3	135	48	23	20	8	1.76
64686--64723	20	1.9	20	100	0	76	50	28	15	5	1.66
64747--64826	33	2.4	33	91	0	124	10	20	22	47	1.79
64772--64850	19	4.3	19	70	18	69	12	20	20	46	1.82
65303--65369	21	3.2	21	66	6	55	23	35	20	19	1.95
65251--65369	42	2.8	42	81	5	107	22	36	18	22	1.95
66717--66752	14	2.6	14	95	0	63	33	0	22	44	1.53
66859--66905	19	2.5	19	96	0	85	44	21	21	12	1.85
66910--66953	19	2.3	19	88	0	61	45	25	13	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66949--67095	19	8.5	19	64	21	81	12	24	19	44	1.84
66953--67079	33	3.8	33	95	0	227	12	24	18	44	1.84
67010--67061	14	3.4	14	72	23	50	11	25	19	44	1.84
67064--67106	20	2.2	19	83	4	50	20	20	20	37	1.95
70531--70882	20	17.3	20	80	6	241	31	18	20	30	1.96
70542--70696	41	3.8	41	92	4	244	38	16	21	23	1.93
70531--70759	61	3.8	59	79	9	205	33	17	19	28	1.95
70686--70839	41	3.8	41	95	0	263	23	21	17	37	1.94
70684--70860	82	2.2	82	85	0	246	26	20	18	34	1.96
70836--70881	21	2.2	21	88	0	65	36	17	28	17	1.92
76982--77062	38	2.1	39	84	8	105	51	2	0	45	1.14
86105--86185	39	2.1	39	97	0	153	14	27	13	44	1.83
92077--92743	113	5.9	113	89	2	927	29	19	13	37	1.90
97235--97298	32	2.0	32	87	6	94	21	17	14	46	1.83
97744--97806	8	7.8	8	87	3	81	3	15	1	79	0.94
101376--101439	23	2.8	22	83	4	74	26	25	26	21	2.00
101455--101672	103	2.1	103	97	0	418	36	24	13	25	1.92
102213--102255	21	2.0	21	86	0	59	16	20	27	34	1.94
108292--108360	23	3.0	22	76	4	66	30	26	21	21	1.99
108376--108593	103	2.1	103	95	0	400	37	24	12	25	1.91
109076--109113	20	1.9	20	88	0	58	10	31	34	23	1.89
109141--109183	21	2.0	21	90	0	68	16	23	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109946--110004	30	2.0	30	93	0	100	15	23	16	44	1.86
114070--114119	3	17.0	3	83	4	66	66	0	0	34	0.92
114070--114107	20	1.9	20	94	0	67	65	0	0	34	0.93
143388--143482	21	4.5	21	90	0	136	28	28	21	22	1.99
143498--143608	21	5.3	21	85	0	150	23	15	27	33	1.95
143491--143608	42	2.8	42	88	0	182	23	16	27	33	1.96
143646--143711	21	3.1	21	78	12	64	21	22	19	36	1.95
143670--143712	21	2.1	21	91	8	72	20	20	16	41	1.90
144427--144561	21	6.4	21	79	16	154	38	20	19	21	1.94
144420--144601	42	4.3	42	83	8	228	35	22	19	21	1.96
144448--144601	63	2.4	63	81	12	215	35	24	19	20	1.96
144420--144606	21	8.9	21	79	12	147	35	22	20	21	1.96
148196--148265	7	10.3	7	72	17	58	47	28	0	24	1.52
148136--148260	47	2.7	46	80	7	119	48	27	0	24	1.52
148159--148265	40	2.7	41	81	10	130	45	28	0	25	1.54
148131--148280	14	11.1	14	65	14	73	47	27	0	24	1.57

Tables:   1

The End!