genome.fa.s13.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000013.1 Hibiscus syriacus cultivar Beakdansim tig00000028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124196

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6714--6803	30	3.0	30	95	0	153	25	20	21	33	1.97
26471--26531	28	2.1	29	81	3	70	42	6	1	49	1.38
28184--28213	14	2.1	14	93	0	51	50	6	0	43	1.28
28303--28404	21	4.9	21	80	7	109	21	0	28	49	1.56
28291--28404	7	16.3	7	88	0	84	21	0	28	48	1.57
28694--28726	17	1.9	17	88	11	50	57	18	12	12	1.64
28765--28798	15	2.3	15	94	0	59	17	41	0	41	1.50
29092--29144	22	2.4	22	100	0	106	32	18	13	35	1.90
29899--29935	17	2.2	17	100	0	74	24	16	32	27	1.96
30011--30071	31	2.0	31	90	0	95	21	14	21	42	1.88
45875--45958	30	2.6	32	74	18	84	17	7	15	59	1.58
46013--46049	12	3.2	12	84	7	58	13	0	21	64	1.27
47696--47758	31	2.0	31	93	0	108	19	15	12	52	1.74
53052--53089	20	1.9	20	100	0	76	10	10	7	71	1.32
54552--54608	27	2.1	28	90	3	89	28	8	22	40	1.84
58550--58586	19	1.9	19	88	0	56	40	18	8	32	1.80
62782--62826	16	2.8	16	77	12	56	35	40	17	6	1.76
64155--64186	16	2.0	16	100	0	64	31	6	31	31	1.82
64255--64368	21	5.5	21	71	12	110	29	18	24	27	1.98
64254--64409	41	3.8	41	93	4	255	33	17	24	25	1.96
64275--64409	20	6.7	19	72	15	101	33	17	25	23	1.96
64821--65562	54	13.8	54	85	6	950	33	18	20	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64821--65562	109	6.9	108	88	4	1034	33	18	20	27	1.96
64821--65562	163	4.6	162	86	5	1020	33	18	20	27	1.96
65682--66017	81	4.2	80	85	2	375	36	11	22	28	1.89
65698--66055	81	4.4	81	81	6	244	36	12	22	28	1.90
70536--71305	54	14.1	54	86	2	1013	33	18	19	28	1.96
70536--71288	109	6.9	109	90	1	1152	33	18	20	28	1.96
71588--71769	81	2.2	81	90	3	278	34	10	25	29	1.89
71588--71806	81	2.7	80	81	5	226	34	12	24	28	1.92
78010--78060	23	2.3	23	80	6	61	19	39	23	17	1.92
81407--81467	22	2.8	22	68	18	56	40	8	13	37	1.74
81420--81912	81	6.1	81	90	0	662	34	12	21	32	1.90
83194--83256	32	2.0	32	93	0	108	50	19	3	26	1.62
85203--85265	32	2.0	32	93	0	108	47	17	6	28	1.72
85928--85964	16	2.3	16	85	0	56	40	8	13	37	1.74
93778--93810	10	3.4	10	87	8	50	21	15	0	63	1.30
95336--95398	10	6.0	11	75	15	62	79	1	17	1	0.89
95341--95398	21	2.8	21	82	12	75	81	1	17	0	0.78
95341--95402	32	1.9	32	87	12	92	80	1	17	0	0.79
97108--97659	134	4.1	134	84	2	671	30	23	17	27	1.97
105573--105658	37	2.4	37	90	2	138	19	10	8	61	1.53
105583--105651	19	3.7	20	71	13	65	18	13	10	57	1.63
112515--113193	352	2.0	349	85	5	939	34	12	12	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114041--114088	21	2.2	22	77	7	53	41	20	6	31	1.77
116463--116497	16	2.2	16	94	0	61	25	14	17	42	1.86
119583--119665	40	2.1	40	97	0	157	45	7	13	33	1.71
123625--123791	68	2.4	72	87	5	234	20	21	33	23	1.97

Tables:   1

The End!