genome.fa.s130.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000130.1 Hibiscus syriacus cultivar Beakdansim tig00000236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113851

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3813--3964	65	2.4	65	82	3	173	30	18	21	29	1.97
11904--11980	30	2.6	30	91	0	118	36	15	10	37	1.82
16757--16797	21	2.0	21	95	0	73	41	17	0	41	1.49
18105--18138	15	2.2	16	89	5	52	73	17	2	5	1.16
20583--20626	16	2.8	16	80	16	56	22	0	6	70	1.11
24167--24236	36	2.0	35	88	0	95	25	28	12	32	1.93
24170--24227	16	3.4	16	69	17	53	24	27	13	34	1.93
25783--26230	228	2.0	227	94	1	781	45	8	7	39	1.61
26296--26345	20	2.5	20	81	12	75	52	10	16	22	1.73
26462--26508	20	2.4	19	79	10	58	55	8	17	19	1.67
28819--28884	33	2.0	33	87	0	96	28	1	45	24	1.62
30675--30737	19	3.4	19	95	2	110	31	3	9	55	1.48
30820--32831	200	10.1	198	95	1	3552	37	14	15	32	1.88
30820--32831	398	5.1	398	97	0	3747	37	14	15	32	1.88
34292--34353	18	3.4	18	88	0	88	38	6	33	20	1.79
34292--34353	6	10.3	6	83	0	61	38	6	33	20	1.79
34307--34357	3	17.0	3	83	0	66	37	3	33	25	1.74
34295--34357	12	5.2	12	90	0	81	36	6	33	23	1.80
35723--36760	184	5.7	184	98	0	1999	35	14	15	34	1.89
35723--36760	366	2.8	368	98	0	2017	35	14	15	34	1.89
39317--39379	23	2.7	23	90	0	90	36	6	19	38	1.77
39317--39389	23	3.2	23	86	3	85	35	5	19	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39744--39806	23	2.7	23	90	0	90	36	6	19	38	1.77
39744--39816	23	3.2	23	86	3	85	35	5	19	39	1.75
44921--44969	20	2.5	20	93	6	82	28	28	18	24	1.98
53664--53717	17	3.1	17	71	10	54	33	1	3	61	1.25
53666--53725	19	3.3	19	68	13	54	35	1	3	60	1.23
55070--55142	20	3.7	20	78	9	69	43	13	15	27	1.84
55313--55369	20	2.8	20	91	0	96	40	17	12	29	1.86
56175--56335	64	2.5	63	84	6	191	36	18	19	25	1.95
60269--60429	64	2.5	63	83	6	191	35	18	19	26	1.95
61108--61171	30	2.1	30	85	0	83	18	18	28	34	1.95
66174--66231	25	2.4	25	85	2	73	36	18	20	24	1.95
66241--66308	23	3.0	23	76	6	75	36	26	17	19	1.94
66225--66318	46	2.0	46	85	0	125	36	23	20	20	1.95
66252--66318	23	2.9	23	73	8	73	35	25	19	19	1.95
66410--66449	16	2.5	16	92	8	64	35	20	7	37	1.81
68317--69502	201	6.1	200	82	9	1304	40	13	12	33	1.83
68895--68932	21	1.9	20	89	10	51	34	10	15	39	1.82
68945--69292	180	1.9	180	88	3	522	42	12	12	33	1.80
69996--70041	18	2.6	18	86	10	67	28	30	8	32	1.87
70357--70382	2	13.0	2	100	0	52	50	0	0	50	1.00
72640--72676	18	2.0	19	89	5	58	27	10	5	56	1.55
74120--75040	200	4.6	199	86	3	1203	40	14	13	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74120--75040	401	2.3	400	86	3	1243	40	14	13	32	1.84
75599--76133	226	2.4	224	88	2	795	31	14	13	40	1.84
76139--76170	12	2.7	12	95	0	55	31	18	9	40	1.83
78416--78470	2	27.5	2	100	0	110	49	0	0	50	1.00
81099--81151	16	3.2	16	72	5	52	41	26	1	30	1.66
81476--81544	23	3.0	23	89	0	102	26	26	27	20	1.99
81560--81772	103	2.1	103	94	0	372	37	23	13	26	1.91
86790--86827	3	12.7	3	100	0	76	0	0	31	68	0.90
89520--89783	88	2.9	93	86	5	403	39	7	9	43	1.65
90974--91049	38	2.0	38	89	0	116	40	11	17	30	1.85
93860--93893	12	2.8	12	100	0	68	0	32	14	52	1.42
94379--94493	34	3.6	31	74	16	85	39	0	0	59	1.10
94581--94654	23	3.2	22	72	16	60	35	0	5	59	1.20
96270--96329	21	2.8	22	90	5	88	20	31	23	25	1.98
96269--96339	21	3.4	21	79	16	76	21	29	23	25	1.99
96860--96966	34	3.1	34	84	0	151	51	6	4	37	1.49
97434--97552	62	1.9	62	96	0	220	42	14	20	23	1.88
97496--97956	127	3.6	127	93	1	780	33	19	23	22	1.97
104403--104478	38	2.0	37	82	7	91	50	3	0	46	1.20
112198--112226	15	1.9	15	100	0	58	48	27	6	17	1.72
112308--112685	181	2.1	178	88	6	570	43	3	7	46	1.47
113213--113351	66	2.1	64	94	2	242	41	15	17	25	1.89

Tables:   1

The End!