genome.fa.s1300.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001300.1 Hibiscus syriacus cultivar Beakdansim tig00002539_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78578

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1778--1901	43	3.0	42	69	20	104	44	4	3	47	1.40
1932--2014	25	3.1	25	75	16	85	39	7	7	45	1.59
1968--2130	70	2.3	73	87	12	248	41	4	7	46	1.53
2053--2107	17	3.4	17	71	19	53	34	3	10	50	1.55
2125--2198	23	3.2	23	70	25	66	39	6	8	45	1.60
2110--2223	48	2.3	46	77	12	122	42	6	5	45	1.51
2929--3063	52	2.6	52	78	12	120	28	29	2	39	1.71
4548--4624	22	3.5	22	85	3	120	28	31	25	14	1.95
5214--5336	66	1.9	64	81	6	149	27	18	17	35	1.94
11530--11572	22	2.0	22	95	0	77	37	32	16	13	1.88
15691--15723	14	2.4	14	94	0	57	57	9	6	27	1.53
15706--15768	18	3.3	18	75	12	63	47	4	3	44	1.40
15825--15864	19	2.1	19	85	0	53	47	10	0	42	1.37
17764--17804	18	2.3	18	91	4	66	63	2	4	29	1.28
18026--18132	50	2.1	50	84	3	135	22	29	30	16	1.96
21086--21142	12	5.2	11	75	14	55	47	7	1	43	1.40
21148--21268	46	2.7	46	90	1	190	42	4	3	49	1.40
21267--21593	33	9.1	33	74	16	249	40	6	7	45	1.58
21296--21406	26	4.3	26	73	15	113	37	9	7	45	1.63
21275--21333	18	3.4	18	67	21	54	42	5	8	44	1.57
21267--21638	110	3.3	110	82	7	358	40	6	7	45	1.58
21421--21636	44	5.2	44	71	19	183	42	5	7	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21388--21560	77	2.2	77	97	0	328	41	4	8	45	1.54
21456--21481	11	2.4	11	100	0	52	53	7	0	38	1.30
21542--21635	26	3.7	26	80	8	129	44	6	6	42	1.55
21565--21635	18	4.1	18	75	17	87	45	5	7	42	1.55
21495--21662	88	1.9	88	80	4	196	44	5	6	44	1.53
22545--22659	61	1.9	61	83	3	151	21	28	3	46	1.68
26001--26033	14	2.4	14	94	0	57	57	9	6	27	1.53
31807--31893	35	2.5	33	75	15	86	54	11	8	26	1.64
32466--32500	18	1.9	18	88	0	52	31	20	20	28	1.97
34656--34988	111	3.0	111	95	0	594	45	10	7	36	1.67
35050--35090	18	2.3	18	91	4	66	63	2	4	29	1.28
35295--35419	50	2.5	50	80	0	151	21	28	32	18	1.97
37914--38073	46	3.5	46	87	3	200	43	5	3	48	1.40
38087--38126	19	2.1	19	100	0	80	42	5	5	47	1.47
38139--38233	50	1.9	50	93	0	163	20	30	32	16	1.95
45306--45483	94	1.9	94	88	0	266	25	17	22	34	1.96
46194--46271	22	3.6	22	89	3	131	44	3	5	46	1.43
46259--46612	33	10.5	33	78	10	351	42	6	7	44	1.56
46307--46360	15	3.4	15	72	22	56	40	5	9	44	1.60
46267--46610	68	5.1	68	79	9	339	41	6	7	45	1.57
46476--46609	51	2.6	51	93	0	232	42	6	7	43	1.59
47304--47430	53	2.4	53	89	1	193	23	33	3	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48391--48436	14	3.3	14	93	0	83	6	15	26	52	1.67
48377--48443	24	2.8	23	81	4	62	8	14	25	50	1.72
48377--48456	38	2.1	38	83	4	99	11	13	22	52	1.72
48406--48456	24	2.1	24	88	0	75	11	11	19	56	1.65
48812--48878	16	4.3	16	83	3	75	13	8	16	61	1.56
50639--50664	13	2.0	13	100	0	52	30	0	7	61	1.24
51631--51663	14	2.4	14	94	0	57	57	6	3	33	1.38
51646--51708	18	3.3	18	75	12	63	47	6	1	44	1.38
61084--61521	218	2.0	213	92	2	714	30	18	19	31	1.95
70675--70701	4	6.8	4	100	0	54	77	0	0	22	0.76
71832--71860	6	4.8	6	100	0	58	0	13	0	86	0.58
72267--72308	15	2.8	15	75	13	50	69	0	0	30	0.89
72734--72782	19	2.6	19	76	0	62	69	4	0	26	1.06
74516--74546	12	2.6	12	89	0	53	74	6	0	19	1.03
75997--77570	81	19.5	81	85	4	2006	28	17	26	26	1.98
75997--77587	161	9.9	162	84	5	1963	28	17	27	26	1.98
75997--77570	319	4.9	320	84	5	1987	28	17	26	26	1.98

Tables:   1

The End!