genome.fa.s1301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001301.1 Hibiscus syriacus cultivar Beakdansim tig00002540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163040

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4657--4699	23	1.9	21	81	13	50	34	13	18	32	1.90
5912--5947	5	7.6	5	93	6	58	0	16	0	83	0.65
9951--9982	15	2.2	14	94	5	55	0	18	3	78	0.89
13974--14005	15	2.2	14	94	5	55	0	18	3	78	0.89
17738--17780	23	1.9	21	81	13	50	32	18	13	34	1.90
27074--27126	23	2.4	22	72	25	56	69	11	11	7	1.35
39157--39189	9	3.7	9	88	11	50	0	21	3	75	0.93
39173--39234	24	2.4	25	75	17	65	6	17	14	61	1.53
42161--42203	20	2.2	20	87	4	61	34	9	6	48	1.62
42920--42959	19	2.0	20	90	4	64	65	0	15	20	1.28
43710--43797	24	3.4	24	71	17	86	26	11	30	31	1.91
43711--43816	54	2.0	54	98	0	203	28	11	28	32	1.91
45625--45665	12	2.9	14	79	20	50	19	12	2	65	1.36
48660--48811	69	2.2	69	80	5	173	24	21	17	37	1.94
54954--55005	16	3.3	15	77	17	52	15	17	0	67	1.24
57902--57952	20	2.6	19	87	3	66	37	9	5	47	1.61
61217--61319	34	3.0	34	80	9	95	31	1	35	31	1.69
61239--61319	34	2.3	35	83	12	105	29	2	37	30	1.71
62548--62598	19	2.6	20	90	3	77	43	5	15	35	1.71
66747--66797	19	2.6	20	90	3	77	43	5	15	35	1.71
71802--71886	34	2.5	35	81	9	104	31	2	34	31	1.71
74133--74162	13	2.4	13	94	5	53	26	30	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81431--81460	13	2.4	13	94	5	53	26	30	0	43	1.55
96503--96662	65	2.5	64	81	6	180	31	22	17	28	1.96
99257--99282	9	2.9	9	100	0	52	34	7	23	34	1.83
101659--101715	21	2.6	21	80	5	69	28	26	22	22	1.99
101629--101721	23	4.3	22	74	14	79	30	23	20	25	1.99
103256--103299	21	2.1	21	83	8	54	9	38	15	36	1.80
104340--104549	65	3.2	65	80	8	198	31	25	18	25	1.97
128417--128455	20	2.0	19	85	5	51	41	10	17	30	1.83
137352--137400	20	2.4	21	79	3	55	26	14	14	44	1.83
146261--146303	23	1.9	23	81	13	54	30	18	13	37	1.90
152331--152399	34	2.1	33	83	8	86	28	36	1	33	1.67
152752--152785	12	2.9	11	87	12	50	76	0	23	0	0.79
156682--156765	11	7.2	11	73	21	73	32	36	3	27	1.74
156679--156779	36	2.9	35	92	2	166	32	36	4	25	1.78
157930--157965	18	2.0	18	89	10	56	0	16	5	77	0.94
160249--160299	19	2.6	20	87	3	68	45	5	15	33	1.71

Tables:   1

The End!