Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001302.1 Hibiscus syriacus cultivar Beakdansim tig00002541_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51016

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
480--511
11
2.8
11
95
4
55
43
0
0
56
0.99
527--594
27
2.9
22
75
23
66
58
4
0
36
1.18
527--592
24
2.7
24
78
19
73
57
4
0
37
1.19
11025--11061
19
2.0
18
89
5
56
51
0
27
21
1.48
12053--12103
21
2.4
22
87
9
79
27
23
15
33
1.95
13379--13436
24
2.4
24
79
0
62
32
27
12
27
1.92
16401--16484
29
2.9
29
94
0
141
32
26
8
33
1.86
16545--16583
17
2.3
17
81
0
51
20
20
12
46
1.83
22748--22830
24
3.5
23
77
4
76
28
22
21
26
1.99
22761--22827
23
2.9
23
80
12
82
29
19
22
28
1.98
22787--22846
12
5.1
12
75
4
50
36
25
11
26
1.90
24324--24356
17
1.9
17
88
11
50
15
12
15
57
1.65
24659--24742
7
12.1
7
82
7
109
48
38
0
13
1.42
24813--24842
14
2.1
14
93
0
51
43
0
6
50
1.28
25474--25513
20
2.0
20
85
9
55
47
0
10
42
1.37
26542--26576
2
17.5
2
100
0
70
48
0
0
51
1.00
27069--27100
15
2.1
15
94
0
55
31
12
12
43
1.80
27594--27761
77
2.2
77
89
0
246
45
8
12
33
1.72
28872--28994
59
2.1
59
96
0
228
23
24
21
30
1.99
29129--29193
26
2.5
26
97
0
121
20
20
23
36
1.95
30051--30481
186
2.3
187
85
3
598
36
12
18
32
1.88
30498--30554
20
2.8
20
97
2
105
35
1
22
40
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32744--32791
21
2.3
20
86
10
69
31
10
16
41
1.82
32755--32794
21
1.9
21
100
0
80
30
10
20
40
1.85
37273--37309
19
1.9
19
88
0
56
43
8
2
45
1.47
43381--43419
17
2.3
18
82
13
55
23
0
15
61
1.33
45982--46037
29
2.0
29
96
3
105
35
21
14
28
1.92

Tables:   1

The End!