genome.fa.s1303.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001303.1 Hibiscus syriacus cultivar Beakdansim tig00002542_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99570

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4925--4962	16	2.4	16	82	4	51	36	0	21	42	1.53
6194--6229	18	2.1	18	89	5	56	50	16	2	30	1.60
6573--6616	24	1.9	22	86	9	61	40	0	0	59	0.98
6572--6616	22	1.9	22	86	13	63	40	0	0	60	0.97
10964--11016	24	2.2	24	86	3	72	20	22	22	33	1.97
14250--14287	16	2.4	16	95	0	67	23	13	26	36	1.91
17731--17785	28	2.0	28	96	0	101	38	5	21	34	1.77
17806--17890	23	3.7	23	88	0	98	18	23	22	35	1.96
21689--21721	16	2.0	17	88	5	50	54	27	18	0	1.44
28957--29000	14	3.1	14	80	6	54	27	9	11	52	1.67
29593--29628	15	2.5	15	86	4	56	33	27	11	27	1.91
29670--29718	21	2.3	21	92	0	89	28	32	8	30	1.86
31042--31075	13	2.5	14	90	4	52	41	8	14	35	1.77
34428--34472	23	2.0	22	91	8	74	44	17	0	37	1.49
44325--44367	21	2.1	20	91	4	68	32	23	0	44	1.54
44328--44370	11	4.0	11	78	6	52	32	23	0	44	1.54
45169--45256	31	2.9	29	75	12	88	34	15	9	40	1.79
45788--45866	39	2.0	39	97	0	149	35	15	21	27	1.93
46060--46107	2	24.0	2	100	0	96	50	0	0	50	1.00
47770--47797	2	14.0	2	100	0	56	50	0	0	50	1.00
48807--48905	51	1.9	51	87	4	146	27	19	12	41	1.86
48886--49183	45	6.6	45	87	1	391	24	17	15	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49568--49619	20	2.5	20	84	6	59	32	15	11	40	1.83
55694--56041	45	7.6	45	83	3	385	25	20	13	41	1.89
55744--56041	136	2.2	135	85	1	382	25	20	13	40	1.89
55694--56036	181	1.9	184	86	4	498	25	19	13	41	1.88
57925--57993	30	2.2	30	85	15	95	34	5	17	42	1.73
57934--57993	30	2.0	30	93	6	104	33	6	16	43	1.74
58072--58234	22	7.7	21	88	7	144	21	36	19	22	1.95
58093--58235	22	6.7	22	89	9	169	21	36	18	23	1.95
58072--58235	42	3.8	41	84	13	199	21	37	18	22	1.95
58257--58329	20	3.6	20	72	7	67	20	26	20	32	1.97
61550--61618	30	2.2	30	82	15	86	33	5	18	42	1.75
61559--61618	29	2.0	30	90	6	95	31	6	18	43	1.76
61748--61790	22	1.9	23	85	4	61	27	30	18	23	1.98
61979--62018	20	1.9	22	90	10	66	37	37	10	15	1.80
74240--74335	44	2.2	44	82	0	111	33	12	20	33	1.90
75516--75813	55	5.4	55	87	4	386	36	15	18	29	1.92
76209--76316	49	2.2	49	89	0	171	33	12	24	29	1.92
76263--77129	68	12.8	68	86	1	1128	31	13	23	31	1.93
77149--77282	45	2.9	45	82	2	151	46	8	19	25	1.79
80781--80964	94	1.9	95	86	7	259	33	16	23	25	1.96
81380--81697	55	5.8	55	86	0	424	33	16	20	29	1.95
82080--82671	68	8.7	68	89	1	911	31	15	23	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82703--82854	45	3.3	45	84	2	187	46	9	19	25	1.79
83997--84033	14	2.6	14	95	0	65	48	0	37	13	1.43
84514--84548	2	17.5	2	100	0	70	51	0	0	48	1.00
84807--84918	2	56.0	2	100	0	224	50	0	0	50	1.00
86463--86516	22	2.5	22	85	5	67	31	14	25	27	1.95
86386--86562	94	1.9	94	89	2	275	34	14	25	24	1.94
86391--86608	94	2.3	94	82	6	228	36	15	24	24	1.94
86981--87246	55	4.8	55	90	0	424	33	17	22	27	1.96
87617--88149	68	7.9	68	88	1	784	31	14	23	30	1.94
87617--88135	203	2.5	203	88	2	774	31	14	23	30	1.94
87617--88149	271	2.0	271	89	1	809	31	14	23	30	1.94
88185--88256	22	3.2	22	67	11	65	45	8	22	23	1.79
88170--88340	45	3.8	46	81	5	195	43	7	22	26	1.78
88170--88334	91	1.8	90	81	3	206	44	7	21	26	1.78
92015--92072	23	2.6	23	80	2	64	24	24	29	22	1.99
99214--99295	21	3.8	21	82	9	85	21	32	17	28	1.96
99457--99495	19	1.9	20	85	15	53	38	33	10	17	1.84

Tables:   1

The End!